AT4G01170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000931
Physical Location & Seq
Forward (+)
499497 .. 500831
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01170.1

Sequence Viewer

Length: 1335 bp
ATGAAGAAGAAAGCCATTGTGATTGATGATGGATATATTCCAATTATCTGTCTTGACGAAGATGATGATGATGATCTTATGATTGATAAGGACTACAACGTCTTCTTGGATCATCTTCGAAGAGGAAGTGTAAGCCCTCGTCTTGAAGTTGACAATGGAGAATCTGACATTCGTAAATTAAAGATCTTTTCTTGTGATTCGAAGATATCAAAGCTTGAGAATGAGAATCCAATGAAGAACAGAGTTCATCAACAGGGCCAGAGGAAAACTGTTGGGTTAAAGGCTGAAAGAGATAAAATCCAAGACATCATTCAACGAGACAACAGAGTTGCTGAACGAAGAAAGCGGAGGATTGCGATGTTAGATGCTGCAAAGGCTTCAAGAGACGTTCCTTTACTCGAAACCCAACAAGAAGACATTCAACAACGAGTTAGGAAACTTTCTGATTCAAAGGCTGAGACTGAGACTTTAAGAAGAGATGATGTTCCATTGGTTGGAAGTCAAGAAGACAGTCAACGAGACAACACAGTTCCATTGGTTAGAACTGCAGAAGAGATTCAACTAGCCAAGAGGGTTGTTGCGGAGATTGATCATGTGGAGCGAGTAAATAGAGTTACAGAGGTTAATGATGTAGATGAGACTTGTTCAAGGAGCAAAGAAGTTTTTGTAGGGAGAAGGAAGAAGAATGAGGGTAGTGAAGCGGTTGTGGATAAGGATTACATGAGGTACCTCACATGGCTTGTAGATTCTCTTAGGGATTCGACAACTGAGCCAATGGAAAATCTTCAGAAAGATGATATGGATACTTTAAAAGAATCGACAATGGTACCTGAAATGGATCCACTAGTCGAAGTGAAGGTTGAACCAGATCATGATTGGTCTGATTATATAATTGCGATGGGTGATTCGCCGTTTTTGGATGTAGAAGAGTGTACACCGTTTGTGGCGTCCAAGAAAGTAGTTGATCTTGATGAAGGAAGCAAAAAGAATGAAAGTAGTATCACTTGGTTTAGAAAGGAGCTAATGGATGTTCTGAAACAACCATATGATGAAGAAGAGATGAAGCAGCTCCATCGTGACGTATCAATCCATAGAAAAATGACTCGATGCAGAGAACTACGAAAGGGAAGAGGATCTGTTTATGAGACTGGCGAACTGGGACAATCTTATCTAGAAAGTTTCCCTGATTTCGAAAAAGAATACAAGCTTGTGGTTGGTGTTGATGATAAGGCAAGAGCTTTGAAGTTGCTGCGTGGCTTTTTCTTTTACTTGAAATATGTTTCTCATGATGGTGTTTTCAAGCCTTGGGAGAAGACTCAAAGTTGGCAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

51.74

Weight (kDa)

5.23

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
Acc65I GGTACC 2 cut(s) 726, 826
AccB1I GGYRCC 2 cut(s) 726, 826
AccB7I CCANNNNNTGG 1 cut(s) 494
AciI CCGC 3 cut(s) 346, 581, 701
AclWI GGATC 4 cut(s) 117, 833, 846, 1141
AcuI CTGAAG 1 cut(s) 770
AcyI GRCGYC 1 cut(s) 947
AfaI GTAC 3 cut(s) 728, 828, 934
AfiI CCNNNNNNNGG 1 cut(s) 494
AhlI ACTAGT 1 cut(s) 844
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 5 cut(s) 214, 1021, 1069, 1207, 1238
AluI AGCT 5 cut(s) 214, 1021, 1069, 1207, 1238
Alw26I GTCTC 7 cut(s) 312, 378, 452, 458, 513, 632, 1139
AlwI GGATC 4 cut(s) 117, 833, 846, 1141
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 368, 1066, 1249
Asp700I GAANNNNTTC 3 cut(s) 417, 555, 783
Asp718I GGTACC 2 cut(s) 726, 826
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 914
AsuII TTCGAA 3 cut(s) 118, 200, 1191
BaeI ACNNNNGTAYC 2 cut(s) 810, 843
BamHI GGATCC 1 cut(s) 838
BanI GGYRCC 2 cut(s) 726, 826
BbsI GAAGAC 4 cut(s) 94, 420, 513, 1319
BbvI GCAGC 3 cut(s) 355, 1078, 1236
BccI CCATC 4 cut(s) 23, 892, 1080, 1283
BceAI ACGGC 1 cut(s) 895
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciVI GTATCC 1 cut(s) 796
BclI TGATCA 1 cut(s) 589
BcoDI GTCTC 7 cut(s) 312, 378, 452, 458, 513, 632, 1139
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 3 cut(s) 563, 845, 1172
BfmI CTRYAG 1 cut(s) 546
BfuI GTATCC 1 cut(s) 796
BglII AGATCT 1 cut(s) 183
BisI GCNGC 3 cut(s) 369, 1067, 1250
BlsI GCNGC 3 cut(s) 370, 1068, 1251
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 3 cut(s) 728, 828, 840
BmrI ACTGGG 1 cut(s) 1166
BmsI GCATC 2 cut(s) 355, 1097
BmuI ACTGGG 1 cut(s) 1166
BpiI GAAGAC 4 cut(s) 94, 420, 513, 1319
Bpu14I TTCGAA 3 cut(s) 118, 200, 1191
BpuEI CTTGAG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 947
BsaJI CCNNGG 1 cut(s) 1304
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 1153, 1161
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 1304
BseGI GGATG 2 cut(s) 925, 1033
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMII CTCAG 3 cut(s) 447, 453, 759
BseNI ACTGG 2 cut(s) 1153, 1161
BseXI GCAGC 3 cut(s) 355, 1078, 1236
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 2 cut(s) 726, 826
BslFI GGGAC 1 cut(s) 1173
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 7 cut(s) 312, 378, 452, 458, 513, 632, 1139
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 1173
BsnI GGCC 1 cut(s) 258
Bsp119I TTCGAA 3 cut(s) 118, 200, 1191
Bsp1407I TGTACA 1 cut(s) 932
Bsp143I GATC 8 cut(s) 73, 109, 183, 589, 838, 868, 964, 1133
BspACI CCGC 3 cut(s) 346, 581, 701
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 3 cut(s) 448, 454, 760
BspHI TCATGA 2 cut(s) 871, 1285
BspLI GGNNCC 3 cut(s) 728, 828, 840
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 4 cut(s) 117, 833, 846, 1141
BspT104I TTCGAA 3 cut(s) 118, 200, 1191
BspT107I GGYRCC 2 cut(s) 726, 826
BsrGI TGTACA 1 cut(s) 932
BsrI ACTGG 2 cut(s) 1153, 1161
BssECI CCNNGG 1 cut(s) 1304
BssMI GATC 8 cut(s) 73, 109, 183, 589, 838, 868, 964, 1133
BssNI GRCGYC 1 cut(s) 947
BssT1I CCWWGG 1 cut(s) 1304
Bst4CI ACNGT 4 cut(s) 271, 512, 529, 939
Bst6I CTCTTC 6 cut(s) 115, 469, 546, 921, 1050, 1123
BstACI GRCGYC 1 cut(s) 947
BstAUI TGTACA 1 cut(s) 932
BstBI TTCGAA 3 cut(s) 118, 200, 1191
BstDEI CTNAG 5 cut(s) 456, 462, 752, 768, 1332
BstF5I GGATG 2 cut(s) 925, 1033
BstKTI GATC 8 cut(s) 76, 112, 186, 592, 841, 871, 967, 1136
BstMAI GTCTC 7 cut(s) 312, 378, 452, 458, 513, 632, 1139
BstMBI GATC 8 cut(s) 73, 109, 183, 589, 838, 868, 964, 1133
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 3 cut(s) 355, 1078, 1236
BstV2I GAAGAC 4 cut(s) 94, 420, 513, 1319
BstX2I RGATCY 3 cut(s) 183, 838, 1133
BstYI RGATCY 3 cut(s) 183, 838, 1133
BsuI GTATCC 1 cut(s) 796
BsuRI GGCC 1 cut(s) 258
BtgZI GCGATG 2 cut(s) 371, 911
BtsCI GGATG 2 cut(s) 925, 1033
CciI TCATGA 2 cut(s) 871, 1285
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 936
Csp6I GTAC 3 cut(s) 727, 827, 933
CviAII CATG 5 cut(s) 593, 721, 735, 872, 1286
CviQI GTAC 3 cut(s) 727, 827, 933
DdeI CTNAG 5 cut(s) 456, 462, 752, 768, 1332
DpnI GATC 8 cut(s) 75, 111, 185, 591, 840, 870, 966, 1135
DpnII GATC 8 cut(s) 73, 109, 183, 589, 838, 868, 964, 1133
DraI TTTAAA 1 cut(s) 810
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 6 cut(s) 115, 469, 546, 921, 1050, 1123
EarI CTCTTC 6 cut(s) 115, 469, 546, 921, 1050, 1123
Eco130I CCWWGG 1 cut(s) 1304
Eco32I GATATC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 770
EcoRV GATATC 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 1304
ErhI CCWWGG 1 cut(s) 1304
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 5 cut(s) 596, 724, 738, 875, 1289
FaqI GGGAC 1 cut(s) 1173
FatI CATG 5 cut(s) 592, 720, 734, 871, 1285
FauNDI CATATG 1 cut(s) 1045
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 3 cut(s) 369, 1067, 1250
FokI GGATG 2 cut(s) 932, 1040
Fsp4HI GCNGC 3 cut(s) 369, 1067, 1250
FspBI CTAG 3 cut(s) 563, 845, 1172
GluI GCNGC 3 cut(s) 369, 1067, 1250
HaeIII GGCC 1 cut(s) 258
HgaI GACGC 1 cut(s) 936
Hin1I GRCGYC 1 cut(s) 947
Hin1II CATG 5 cut(s) 596, 724, 738, 875, 1289
HincII GTYRAC 2 cut(s) 151, 515
HindII GTYRAC 2 cut(s) 151, 515
HindIII AAGCTT 2 cut(s) 212, 1205
HphI GGTGA 1 cut(s) 914
Hpy166II GTNNAC 4 cut(s) 151, 515, 933, 935
Hpy188I TCNGA 5 cut(s) 166, 445, 789, 883, 1035
Hpy188III TCNNGA 9 cut(s) 53, 143, 381, 503, 872, 968, 1076, 1172, 1286
Hpy8I GTNNAC 4 cut(s) 151, 515, 933, 935
HpyAV CCTTC 3 cut(s) 669, 850, 968
HpyCH4III ACNGT 4 cut(s) 271, 512, 529, 939
HpyCH4IV ACGT 3 cut(s) 99, 387, 1080
HpyCH4V TGCA 3 cut(s) 371, 548, 1110
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 5 cut(s) 456, 462, 752, 768, 1332
HpySE526I ACGT 3 cut(s) 99, 387, 1080
Hsp92I GRCGYC 1 cut(s) 947
Hsp92II CATG 5 cut(s) 596, 724, 738, 875, 1289
KpnI GGTACC 2 cut(s) 730, 830
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 8 cut(s) 73, 109, 183, 589, 838, 868, 964, 1133
LmnI GCTCC 4 cut(s) 598, 651, 1018, 1074
LpnPI CCDG 7 cut(s) 239, 272, 843, 879, 1134, 1142, 1197
Lsp1109I GCAGC 3 cut(s) 355, 1078, 1236
LweI GCATC 2 cut(s) 355, 1097
MaeI CTAG 3 cut(s) 563, 845, 1172
MaeII ACGT 3 cut(s) 99, 387, 1080
MaeIII GTNAC 2 cut(s) 613, 1076
MalI GATC 8 cut(s) 75, 111, 185, 591, 840, 870, 966, 1135
MboI GATC 8 cut(s) 73, 109, 183, 589, 838, 868, 964, 1133
MflI RGATCY 3 cut(s) 183, 838, 1133
MluCI AATT 3 cut(s) 42, 176, 891
MlyI GAGTC 2 cut(s) 1096, 1309
MmeI TCCRAC 1 cut(s) 475
MroXI GAANNNNTTC 3 cut(s) 417, 555, 783
MseI TTAA 5 cut(s) 179, 278, 470, 624, 809
MslI CAYNNNNRTG 1 cut(s) 1290
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeI CATATG 1 cut(s) 1045
NdeII GATC 8 cut(s) 73, 109, 183, 589, 838, 868, 964, 1133
NlaIII CATG 5 cut(s) 596, 724, 738, 875, 1289
NlaIV GGNNCC 3 cut(s) 728, 828, 840
NmuCI GTSAC 1 cut(s) 1076
NspV TTCGAA 3 cut(s) 118, 200, 1191
PagI TCATGA 2 cut(s) 871, 1285
PdmI GAANNNNTTC 3 cut(s) 417, 555, 783
PfeI GAWTC 9 cut(s) 161, 197, 226, 446, 556, 746, 758, 815, 905
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 3 cut(s) 370, 1068, 1251
PleI GAGTC 2 cut(s) 1096, 1309
PpsI GAGTC 2 cut(s) 1096, 1309
PspN4I GGNNCC 3 cut(s) 728, 828, 840
PspPI GGNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 3 cut(s) 183, 838, 1133
RsaI GTAC 3 cut(s) 728, 828, 934
RsaNI GTAC 3 cut(s) 727, 827, 933
RseI CAYNNNNRTG 1 cut(s) 1290
SaqAI TTAA 5 cut(s) 179, 278, 470, 624, 809
SatI GCNGC 3 cut(s) 369, 1067, 1250
Sau3AI GATC 8 cut(s) 73, 109, 183, 589, 838, 868, 964, 1133
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 2 cut(s) 1096, 1309
SfaNI GCATC 2 cut(s) 355, 1097
SfcI CTRYAG 1 cut(s) 546
SfuI TTCGAA 3 cut(s) 118, 200, 1191
SmiMI CAYNNNNRTG 1 cut(s) 1290
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 844
Sse9I AATT 3 cut(s) 42, 176, 891
SsiI CCGC 3 cut(s) 346, 581, 701
SspMI CTAG 3 cut(s) 563, 845, 1172
StyI CCWWGG 1 cut(s) 1304
TaaI ACNGT 4 cut(s) 271, 512, 529, 939
TaiI ACGT 3 cut(s) 102, 390, 1083
TaqI TCGA 8 cut(s) 118, 200, 399, 761, 818, 849, 1105, 1191
TasI AATT 3 cut(s) 42, 176, 891
TatI WGTACW 1 cut(s) 932
TfiI GAWTC 9 cut(s) 161, 197, 226, 446, 556, 746, 758, 815, 905
Tru1I TTAA 5 cut(s) 179, 278, 470, 624, 809
Tru9I TTAA 5 cut(s) 179, 278, 470, 624, 809
TseFI GTSAC 1 cut(s) 1076
TseI GCWGC 3 cut(s) 368, 1066, 1249
Tsp45I GTSAC 1 cut(s) 1076
TspDTI ATGAA 7 cut(s) 17, 236, 248, 987, 1005, 1065, 1076
Van91I CCANNNNNTGG 1 cut(s) 494
XbaI TCTAGA 1 cut(s) 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XmnI GAANNNNTTC 3 cut(s) 417, 555, 783
XspI CTAG 3 cut(s) 563, 845, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.