Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Reverse (-)

13433919 .. 13434340

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G36020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGATACGACGTGTTTGGTGTTAACTTGGATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACGGCGAATTCGATTGGGAAGCAGCAGTCAAAGAAATCGACTTGGCTTGTCTAAAAACCACAAACGCTCATCCACCAATTACGGAAAATCTCACTAAACCACCTGCGAAAAGACAATCTACTCTCGATAAATTCATCGGTAGAACCGAACCTAAACCAGAAAATCATCAAGTTGTTTCTGAGTGTGGTGGTAATGATAACGATAATAGTCTTTTAGTTGAGATTGATCCTGAGGCAGCTAAAACTTGGATTTATCGAGGTTTGTTGAGATTGTTAACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

116

Amino Acids

13.04

Weight (kDa)

4.67

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	178
Acc36I	ACCTGC	1 cut(s)	178
AclWI	GGATC	2 cut(s)	43, 287
AcsI	RAATTY	2 cut(s)	74, 197
AflIII	ACRYGT	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	12
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
AlwI	GGATC	2 cut(s)	43, 287
ApeKI	GCWGC	2 cut(s)	89, 302
ApoI	RAATTY	2 cut(s)	74, 197
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AxyI	CCTNAGG	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	101, 314
BccI	CCATC	2 cut(s)	25, 65
BceAI	ACGGC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	90, 303
BlsI	GCNGC	2 cut(s)	91, 304
BmgBI	CACGTC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	72
Bse21I	CCTNAGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	36, 136
BseMII	CTCAG	2 cut(s)	237, 288
BseXI	GCAGC	2 cut(s)	101, 314
Bsp143I	GATC	2 cut(s)	35, 292
BspCNI	CTCAG	2 cut(s)	238, 289
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	43, 287
BssMI	GATC	2 cut(s)	35, 292
BstDEI	CTNAG	2 cut(s)	246, 297
BstF5I	GGATG	2 cut(s)	36, 136
BstKTI	GATC	2 cut(s)	38, 295
BstMBI	GATC	2 cut(s)	35, 292
BstV1I	GCAGC	2 cut(s)	101, 314
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	36, 136
BveI	ACCTGC	1 cut(s)	178
CviJI	RGCY	2 cut(s)	113, 305
CviKI_1	RGCY	2 cut(s)	113, 305
DdeI	CTNAG	2 cut(s)	246, 297
DpnI	GATC	2 cut(s)	37, 294
DpnII	GATC	2 cut(s)	35, 292
Eco81I	CCTNAGG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	90, 303
FokI	GGATG	2 cut(s)	43, 123
Fsp4HI	GCNGC	2 cut(s)	90, 303
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	90, 303
HincII	GTYRAC	2 cut(s)	24, 342
HindII	GTYRAC	2 cut(s)	24, 342
HpaI	GTTAAC	2 cut(s)	24, 342
Hpy166II	GTNNAC	2 cut(s)	24, 342
Hpy188I	TCNGA	2 cut(s)	247, 350
Hpy188III	TCNNGA	2 cut(s)	191, 296
Hpy8I	GTNNAC	2 cut(s)	24, 342
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	246, 297
HpySE526I	ACGT	1 cut(s)	11
KspAI	GTTAAC	2 cut(s)	24, 342
Kzo9I	GATC	2 cut(s)	35, 292
LpnPI	CCDG	3 cut(s)	183, 237, 309
Lsp1109I	GCAGC	2 cut(s)	101, 314
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	11
MalI	GATC	2 cut(s)	37, 294
MboI	GATC	2 cut(s)	35, 292
MboII	GAAGA	2 cut(s)	74, 77
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	3 cut(s)	74, 144, 197
MnlI	CCTC	2 cut(s)	292, 317
MseI	TTAA	2 cut(s)	23, 341
NdeII	GATC	2 cut(s)	35, 292
NlaIV	GGNNCC	1 cut(s)	45
PaqCI	CACCTGC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 210
PkrI	GCNGC	2 cut(s)	91, 304
PspN4I	GGNNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	23, 341
SatI	GCNGC	2 cut(s)	90, 303
Sau3AI	GATC	2 cut(s)	35, 292
SetI	ASST	5 cut(s)	14, 172, 220, 307, 328
Sse9I	AATT	3 cut(s)	74, 144, 197
SspMI	CTAG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	5 cut(s)	60, 78, 105, 192, 322
TasI	AATT	3 cut(s)	74, 144, 197
Tru1I	TTAA	2 cut(s)	23, 341
Tru9I	TTAA	2 cut(s)	23, 341
TseI	GCWGC	2 cut(s)	89, 302
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	1 cut(s)	164
XapI	RAATTY	2 cut(s)	74, 197
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.