pycom15g36180

DEAD DEAH box RNA helicase family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
36243270 .. 36245554
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g36180.3

Sequence Viewer

Length: 1209 bp
ATGCTAACATATGATGCAGGACTATCAAATAACTCAAATGAGTATGCAGTTCCTGTCCCTGTTTCACCTGCCCAGTTACATCCTGCAAATAGAGAAAAAGTAAGTACGGAAAACAATGCCTGTGGAGGAAAAGTCTCTGTTTCTTCTATGGATACTGAAATTCGAACTCCATTCCATAACAAGCATAGTAGTGCCAGTATAAGAGGCTGTACCTCCGCATCACCAATTAGTGGAAGAGCTAATACTGTTTTAGCTGACCTTACAAACAATAGTTGTGGCAAAGATTGGAATTTAAGTTCTGGAGACAAGTCGGAAAGTGTTAAAGAGGCACGCAAGTTTAGAAGGTTGCGCAAAGTCGGGGATCGTTGGAAAAGTAGGAATCGAGAAAGCGTGACAAATAATGTGGGGTCAACAAGAAACCTTGCTAGATCATTTTCTAAAACTGGTTCACTCCATTCGAAGCACAATAGAGGTAAAAAAAATTCAGTTGATGATGTAAGGGCCTTCATCGAGGAGGAAGCTGAGGTATCTTCAGAAGCTGGTATGTCTGATGATGAGGAAGATGATCAAGACAACTATTCAAATGATAGTTTCATAGATGACAGAATAAATCCTACAGCTGCGGCTACTCAGTCTGCAAGTGGAGGAAATGATATGATGGCAATATACAGGCGTTCATTGCTCACCCAATCACCCATGGAGAGGCAGCCAGTTAGTTCTGCGGTACATTCACCTGATTCTGTGGCAGCGACAACGAGGACAACCGAAACTGGAAGTTCCTGTGGCAAAACATCGTTCTCTCTCCAAACGCCCCAAAGTGATGGTACAAATCAGTCAACCAGGATGGATTCAAAGTCCTTGGAAATGAACCGGGTAAGGGTAGACATACCTTGTACCGGTGGTGTTTCCCCAGAATACGAGAGAGATGTTGAAAGCCGTAAAAGAAAATTGAGCTGTCATCATTCAAGATATCCTGCAGTCAACTTGGAGCGAGAGTTCTCGCTCGAGTCAGAGGCTGCAGGCAGAGACTTGCAGCGCATTGATGCAAACGATGACATGCTTGACGATCAGTTTTTCGAGGGTCTTGATCTTGACGCAATGGAAGCGCAAGCTACATTGCTTCTTAAACAGAAAACAGAAGCGCCAAGGCCGCAGGAGCAGCATCTGGTTCCCAAGTTGTTCGAGCCGACATTTGATCTTGGTATATAA

Protein Analysis

403

Amino Acids

44.25

Weight (kDa)

5.61

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc16I TGCGCA 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 76
AccB7I CCANNNNNTGG 1 cut(s) 230
AccI GTMKAC 1 cut(s) 882
AciI CCGC 4 cut(s) 216, 623, 722, 1151
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 3 cut(s) 159, 289, 481
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 5 cut(s) 106, 211, 726, 826, 895
AfiI CCNNNNNNNGG 4 cut(s) 230, 702, 877, 896
AgeI ACCGGT 1 cut(s) 896
AgsI TTSAA 4 cut(s) 582, 852, 932, 966
AjnI CCWGG 1 cut(s) 839
AloI GAACNNNNNNTCC 4 cut(s) 280, 312, 980, 1012
AluBI AGCT 7 cut(s) 239, 254, 521, 539, 620, 954, 1112
AluI AGCT 7 cut(s) 239, 254, 521, 539, 620, 954, 1112
Alw26I GTCTC 3 cut(s) 139, 297, 1020
AlwI GGATC 1 cut(s) 369
AlwNI CAGNNNCTG 4 cut(s) 53, 539, 1016, 1165
Ama87I CYCGRG 1 cut(s) 1004
AoxI GGCC 2 cut(s) 501, 1148
ApeKI GCWGC 6 cut(s) 620, 706, 746, 1016, 1033, 1159
ApoI RAATTY 3 cut(s) 159, 289, 481
AsiGI ACCGGT 1 cut(s) 896
AspLEI GCGC 4 cut(s) 351, 1038, 1108, 1144
AspS9I GGNCC 1 cut(s) 501
AsuC2I CCSGG 1 cut(s) 872
AsuHPI GGTGA 5 cut(s) 57, 213, 676, 684, 723
AsuII TTCGAA 2 cut(s) 163, 458
AvaI CYCGRG 1 cut(s) 1004
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 6 cut(s) 607, 718, 758, 1003, 1045, 1171
BccI CCATC 3 cut(s) 652, 815, 838
BceAI ACGGC 1 cut(s) 921
BciT130I CCWGG 1 cut(s) 841
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 1 cut(s) 872
BcoDI GTCTC 3 cut(s) 139, 297, 1020
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 3 cut(s) 615, 975, 1017
BfoI RGCGCY 1 cut(s) 1145
BfuAI ACCTGC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 8 cut(s) 621, 624, 707, 747, 1017, 1034, 1151, 1160
BlsI GCNGC 8 cut(s) 622, 625, 708, 748, 1018, 1035, 1152, 1161
Bme1390I CCNGG 2 cut(s) 841, 872
BmeT110I CYCGRG 1 cut(s) 1004
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 1170
BmrFI CCNGG 2 cut(s) 841, 872
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 4 cut(s) 4, 227, 1033, 1171
BmuI ACTGGG 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 2 cut(s) 163, 458
BpuMI CCSGG 1 cut(s) 872
BsaJI CCNNGG 3 cut(s) 696, 858, 1145
BsaWI WCCGGW 1 cut(s) 896
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 980, 1010
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 702, 877, 896
Bse118I RCCGGY 1 cut(s) 896
Bse1I ACTGG 5 cut(s) 73, 195, 448, 710, 775
Bse3DI GCAATG 3 cut(s) 677, 1104, 1115
BseBI CCWGG 1 cut(s) 841
BseDI CCNNGG 3 cut(s) 696, 858, 1145
BseGI GGATG 2 cut(s) 79, 849
BseLI CCNNNNNNNGG 4 cut(s) 230, 702, 877, 896
BseMI GCAATG 3 cut(s) 677, 1104, 1115
BseMII CTCAG 2 cut(s) 513, 644
BseNI ACTGG 5 cut(s) 73, 195, 448, 710, 775
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 6 cut(s) 607, 718, 758, 1003, 1045, 1171
BshFI GGCC 2 cut(s) 503, 1150
BshTI ACCGGT 1 cut(s) 896
BsiHKCI CYCGRG 1 cut(s) 1004
BsiSI CCGG 2 cut(s) 871, 897
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 4 cut(s) 230, 702, 877, 896
BsmAI GTCTC 3 cut(s) 139, 297, 1020
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 2 cut(s) 503, 1150
BsoBI CYCGRG 1 cut(s) 1004
Bsp119I TTCGAA 2 cut(s) 163, 458
Bsp143I GATC 6 cut(s) 361, 428, 565, 1066, 1087, 1195
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 4 cut(s) 216, 623, 722, 1151
BspANI GGCC 2 cut(s) 503, 1150
BspCNI CTCAG 2 cut(s) 514, 643
BspLI GGNNCC 1 cut(s) 1170
BspMAI CTGCAG 2 cut(s) 979, 1021
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 229
BspT104I TTCGAA 2 cut(s) 163, 458
BsrDI GCAATG 3 cut(s) 677, 1104, 1115
BsrFI RCCGGY 1 cut(s) 896
BsrI ACTGG 5 cut(s) 73, 195, 448, 710, 775
BssAI RCCGGY 1 cut(s) 896
BssECI CCNNGG 3 cut(s) 696, 858, 1145
BssMI GATC 6 cut(s) 361, 428, 565, 1066, 1087, 1195
BssT1I CCWWGG 3 cut(s) 696, 858, 1145
Bst2UI CCWGG 1 cut(s) 841
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 229
BstBI TTCGAA 2 cut(s) 163, 458
BstC8I GCNNGC 3 cut(s) 331, 1021, 1110
BstDEI CTNAG 2 cut(s) 522, 630
BstDSI CCRYGG 1 cut(s) 696
BstF5I GGATG 2 cut(s) 79, 849
BstH2I RGCGCY 1 cut(s) 1145
BstHHI GCGC 4 cut(s) 351, 1038, 1108, 1144
BstKTI GATC 6 cut(s) 364, 431, 568, 1069, 1090, 1198
BstMAI GTCTC 3 cut(s) 139, 297, 1020
BstMBI GATC 6 cut(s) 361, 428, 565, 1066, 1087, 1195
BstMWI GCNNNNNNNGC 5 cut(s) 679, 1103, 1150, 1156, 1159
BstNI CCWGG 1 cut(s) 841
BstNSI RCATGY 1 cut(s) 1060
BstSCI CCNGG 2 cut(s) 839, 870
BstSFI CTRYAG 3 cut(s) 615, 975, 1017
BstV1I GCAGC 6 cut(s) 607, 718, 758, 1003, 1045, 1171
BstXI CCANNNNNNTGG 1 cut(s) 821
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 503, 1150
BtgI CCRYGG 1 cut(s) 696
BtsCI GGATG 2 cut(s) 79, 849
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 3 cut(s) 331, 1021, 1110
CaiI CAGNNNCTG 4 cut(s) 53, 539, 1016, 1165
CfoI GCGC 4 cut(s) 351, 1038, 1108, 1144
Cfr10I RCCGGY 1 cut(s) 896
Cfr13I GGNCC 1 cut(s) 501
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 5 cut(s) 105, 210, 725, 825, 894
CspAI ACCGGT 1 cut(s) 896
CspCI CAANNNNNGTGG 6 cut(s) 103, 138, 256, 291, 384, 419
CviAII CATG 2 cut(s) 697, 1057
CviQI GTAC 5 cut(s) 105, 210, 725, 825, 894
DdeI CTNAG 2 cut(s) 522, 630
DpnI GATC 6 cut(s) 363, 430, 567, 1068, 1089, 1197
DpnII GATC 6 cut(s) 361, 428, 565, 1066, 1087, 1195
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 696, 858, 1145
Eco32I GATATC 1 cut(s) 971
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 1004
EcoO109I RGGNCCY 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 839
EcoRV GATATC 1 cut(s) 971
EcoT14I CCWWGG 3 cut(s) 696, 858, 1145
ErhI CCWWGG 3 cut(s) 696, 858, 1145
FaeI CATG 2 cut(s) 700, 1060
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 696, 1056
FauNDI CATATG 1 cut(s) 10
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 8 cut(s) 621, 624, 707, 747, 1017, 1034, 1151, 1160
FokI GGATG 2 cut(s) 66, 856
Fsp4HI GCNGC 8 cut(s) 621, 624, 707, 747, 1017, 1034, 1151, 1160
FspBI CTAG 1 cut(s) 426
FspI TGCGCA 1 cut(s) 350
GlaI GCGC 4 cut(s) 350, 1037, 1107, 1143
GluI GCNGC 8 cut(s) 621, 624, 707, 747, 1017, 1034, 1151, 1160
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 1145
HaeIII GGCC 2 cut(s) 503, 1150
HapII CCGG 2 cut(s) 871, 897
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 4 cut(s) 351, 1038, 1108, 1144
Hin1II CATG 2 cut(s) 700, 1060
Hin6I GCGC 4 cut(s) 349, 1036, 1106, 1142
HinP1I GCGC 4 cut(s) 349, 1036, 1106, 1142
HincII GTYRAC 3 cut(s) 411, 837, 982
HindII GTYRAC 3 cut(s) 411, 837, 982
HinfI GANTC 4 cut(s) 379, 737, 848, 1007
HpaII CCGG 2 cut(s) 871, 897
HphI GGTGA 5 cut(s) 57, 213, 676, 684, 723
Hpy166II GTNNAC 5 cut(s) 411, 449, 837, 883, 982
Hpy188I TCNGA 4 cut(s) 313, 535, 550, 1012
Hpy188III TCNNGA 6 cut(s) 300, 383, 569, 966, 1085, 1091
Hpy8I GTNNAC 5 cut(s) 411, 449, 837, 883, 982
HpyAV CCTTC 2 cut(s) 336, 514
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 8 cut(s) 17, 47, 86, 638, 977, 1019, 1033, 1046
HpyF10VI GCNNNNNNNGC 5 cut(s) 679, 1103, 1150, 1156, 1159
HpyF3I CTNAG 2 cut(s) 522, 630
Hsp92II CATG 2 cut(s) 700, 1060
HspAI GCGC 4 cut(s) 349, 1036, 1106, 1142
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 6 cut(s) 361, 428, 565, 1066, 1087, 1195
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 988, 1156
Lsp1109I GCAGC 6 cut(s) 607, 718, 758, 1003, 1045, 1171
LweI GCATC 4 cut(s) 4, 227, 1033, 1171
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 75, 391
MalI GATC 6 cut(s) 363, 430, 567, 1068, 1089, 1197
MboI GATC 6 cut(s) 361, 428, 565, 1066, 1087, 1195
MboII GAAGA 4 cut(s) 135, 246, 522, 572
MluCI AATT 5 cut(s) 159, 225, 289, 481, 947
MlyI GAGTC 1 cut(s) 1016
MmeI TCCRAC 2 cut(s) 291, 347
MseI TTAA 3 cut(s) 293, 321, 1125
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 2 cut(s) 871, 897
MspR9I CCNGG 2 cut(s) 841, 872
MvaI CCWGG 1 cut(s) 841
MwoI GCNNNNNNNGC 5 cut(s) 679, 1103, 1150, 1156, 1159
NciI CCSGG 1 cut(s) 872
NcoI CCATGG 1 cut(s) 696
NdeI CATATG 1 cut(s) 10
NdeII GATC 6 cut(s) 361, 428, 565, 1066, 1087, 1195
NlaIII CATG 2 cut(s) 700, 1060
NlaIV GGNNCC 1 cut(s) 1170
NmuCI GTSAC 1 cut(s) 391
NsbI TGCGCA 1 cut(s) 350
NspI RCATGY 1 cut(s) 1060
NspV TTCGAA 2 cut(s) 163, 458
PaeR7I CTCGAG 1 cut(s) 1004
PaqCI CACCTGC 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 229
PfeI GAWTC 3 cut(s) 379, 737, 848
PflMI CCANNNNNTGG 1 cut(s) 230
PinAI ACCGGT 1 cut(s) 896
PkrI GCNGC 8 cut(s) 622, 625, 708, 748, 1018, 1035, 1152, 1161
PleI GAGTC 1 cut(s) 1015
PpsI GAGTC 1 cut(s) 1015
Psp6I CCWGG 1 cut(s) 839
PspGI CCWGG 1 cut(s) 839
PspN4I GGNNCC 1 cut(s) 1170
PspPI GGNCC 1 cut(s) 501
PspXI VCTCGAGB 1 cut(s) 1004
PstI CTGCAG 2 cut(s) 979, 1021
PstNI CAGNNNCTG 4 cut(s) 53, 539, 1016, 1165
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 5 cut(s) 106, 211, 726, 826, 895
RsaNI GTAC 5 cut(s) 105, 210, 725, 825, 894
RseI CAYNNNNRTG 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 229
SaqAI TTAA 3 cut(s) 293, 321, 1125
SatI GCNGC 8 cut(s) 621, 624, 707, 747, 1017, 1034, 1151, 1160
Sau3AI GATC 6 cut(s) 361, 428, 565, 1066, 1087, 1195
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 1 cut(s) 1016
ScrFI CCNGG 2 cut(s) 841, 872
SfaNI GCATC 4 cut(s) 4, 227, 1033, 1171
SfcI CTRYAG 3 cut(s) 615, 975, 1017
Sfr274I CTCGAG 1 cut(s) 1004
SfuI TTCGAA 2 cut(s) 163, 458
SlaI CTCGAG 1 cut(s) 1004
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 5 cut(s) 159, 225, 289, 481, 947
SsiI CCGC 4 cut(s) 216, 623, 722, 1151
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 839, 870
StyI CCWWGG 3 cut(s) 696, 858, 1145
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 7 cut(s) 163, 382, 458, 510, 1005, 1077, 1182
TasI AATT 5 cut(s) 159, 225, 289, 481, 947
TauI GCSGC 2 cut(s) 626, 1153
TfiI GAWTC 3 cut(s) 379, 737, 848
Tru1I TTAA 3 cut(s) 293, 321, 1125
Tru9I TTAA 3 cut(s) 293, 321, 1125
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 6 cut(s) 620, 706, 746, 1016, 1033, 1159
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 4 cut(s) 496, 583, 666, 881
TspGWI ACGGA 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 230
XapI RAATTY 3 cut(s) 159, 289, 481
XceI RCATGY 1 cut(s) 1060
XhoI CTCGAG 1 cut(s) 1004
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.