Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Reverse (-)

49684955 .. 49687095

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGAAATGTTGATGCAGTTGTGGTGATGCCTCAGACTAATATTAAGGGTAGCAAGAGGCTTGTGAAAATGCTTGAGGAAAAGGAAATAGTGGTGAAACCTCTTGTTGTGGAGGTGAAATCTAAATCGTTAGAGCATGTTGCAAGGGATCTTGAGGTGGTGGAGAAACCTAATTCTTCAAAGGAAGAGATGGAAGAGGTTGTTGATCTGAAAGATTCAATGGAGCAAGTGGTGGATGATTGGTTTATTCACAAGCCCACACCCACCCGCATTTCAGTCACAGCTACCTCAATGACCTCCACCGATCCTCACCACATAGTCGACGACGACGAAGACGACGATTTCGATTGGGAAGCAGCTGCCAGAGCCGTCGACGTCGTCACCCAGACCACCCCAAAGCCCACATCTTCCCATTTTGCCCCTCCTCCCCCAATTCAGAAACCACCGTTTCCTCCAACCTTCAACAACAAGCCCAGTACTTCACGGCAGACCACTCTCGATAGGTTCATTGGGAAGCCCGCCCCAAAGCCTCAGCCCGAAATTCGAGACTGCGGCGATGAGAGAGTGTCCCGTGTTTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

194

Amino Acids

21.7

Weight (kDa)

5.08

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
AccI	GTMKAC	2 cut(s)	321, 372
AciI	CCGC	3 cut(s)	268, 519, 552
AclWI	GGATC	2 cut(s)	156, 299
AcsI	RAATTY	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	180, 219, 463, 579
AluBI	AGCT	2 cut(s)	284, 359
AluI	AGCT	2 cut(s)	284, 359
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	156, 299
ApeKI	GCWGC	2 cut(s)	356, 359
ApoI	RAATTY	1 cut(s)	540
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AsuHPI	GGTGA	5 cut(s)	37, 106, 127, 302, 373
BbsI	GAAGAC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	346, 368
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	2 cut(s)	353, 500
BcoDI	GTCTC	1 cut(s)	540
BisI	GCNGC	3 cut(s)	357, 360, 553
BlsI	GCNGC	3 cut(s)	358, 361, 554
BmcAI	AGTACT	1 cut(s)	478
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	4, 18
BmuI	ACTGGG	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	95, 173
BsaHI	GRCGYC	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	47, 545
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	346, 368
BslFI	GGGAC	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	553
Bsp143I	GATC	3 cut(s)	148, 205, 304
BspACI	CCGC	3 cut(s)	268, 519, 552
BspCNI	CTCAG	2 cut(s)	46, 544
BspPI	GGATC	2 cut(s)	156, 299
BsrI	ACTGG	1 cut(s)	474
BssMI	GATC	3 cut(s)	148, 205, 304
BssNI	GRCGYC	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	2 cut(s)	180, 189
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	33, 531
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	3 cut(s)	151, 208, 307
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	3 cut(s)	148, 205, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	346, 368
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	1 cut(s)	137
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	2 cut(s)	33, 531
DpnI	GATC	3 cut(s)	150, 207, 306
DpnII	GATC	3 cut(s)	148, 205, 304
Eam1104I	CTCTTC	2 cut(s)	180, 189
EarI	CTCTTC	2 cut(s)	180, 189
FaeI	CATG	1 cut(s)	140
FaiI	YATR	2 cut(s)	138, 317
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	1 cut(s)	136
FauI	CCCGC	2 cut(s)	275, 526
FblI	GTMKAC	2 cut(s)	321, 372
Fnu4HI	GCNGC	3 cut(s)	357, 360, 553
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	3 cut(s)	357, 360, 553
GluI	GCNGC	3 cut(s)	357, 360, 553
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	2 cut(s)	322, 373
HindII	GTYRAC	2 cut(s)	322, 373
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	5 cut(s)	37, 106, 127, 302, 373
Hpy166II	GTNNAC	2 cut(s)	322, 373
Hpy188I	TCNGA	3 cut(s)	36, 210, 438
Hpy188III	TCNNGA	3 cut(s)	152, 497, 545
Hpy8I	GTNNAC	2 cut(s)	322, 373
Hpy99I	CGWCG	7 cut(s)	326, 329, 332, 341, 374, 377, 380
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	2 cut(s)	17, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	33, 531
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	3 cut(s)	148, 205, 304
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	3 cut(s)	376, 398, 487
Lsp1109I	GCAGC	2 cut(s)	346, 368
LweI	GCATC	2 cut(s)	4, 18
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	277, 379
MalI	GATC	3 cut(s)	150, 207, 306
MboI	GATC	3 cut(s)	148, 205, 304
MboII	GAAGA	5 cut(s)	168, 197, 206, 344, 399
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	4 cut(s)	172, 432, 540, 580
MmeI	TCCRAC	1 cut(s)	479
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	3 cut(s)	148, 205, 304
NlaIII	CATG	1 cut(s)	140
NmuCI	GTSAC	2 cut(s)	277, 379
NspI	RCATGY	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	4 cut(s)	327, 333, 336, 342
PfeI	GAWTC	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	358, 361, 554
PsuI	RGATCY	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
SalI	GTCGAC	2 cut(s)	320, 371
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	3 cut(s)	357, 360, 553
Sau3AI	GATC	3 cut(s)	148, 205, 304
ScaI	AGTACT	1 cut(s)	478
SfaNI	GCATC	2 cut(s)	4, 18
SgrDI	CGTCGACG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	74, 152
SmoI	CTYRAG	2 cut(s)	74, 152
Sse9I	AATT	4 cut(s)	172, 432, 540, 580
SsiI	CCGC	3 cut(s)	268, 519, 552
SspI	AATATT	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	5 cut(s)	321, 345, 372, 498, 544
TasI	AATT	4 cut(s)	172, 432, 540, 580
TatI	WGTACW	1 cut(s)	476
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	277, 379
TseI	GCWGC	2 cut(s)	356, 359
Tsp45I	GTSAC	2 cut(s)	277, 379
TspDTI	ATGAA	1 cut(s)	496
Tth111I	GACNNNGTC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	540
XceI	RCATGY	1 cut(s)	140
XmiI	GTMKAC	2 cut(s)	321, 372
ZraI	GACGTC	1 cut(s)	376
ZrmI	AGTACT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.