Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Forward (+)

26386505 .. 26389954

Gene Structure 3450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCTTGAGGAAGAGGAAACAGTGGTGAAACCTCTCGTTGTAGAGGTGATATCTAAATCATTGGATCTTATTGCAGGGGATTTTGAGGTGGCGGAGAATCCTAATTCTTCAAATGAAGAGATGGAAGAGGTCGTCGATGTGAAAGATTCAATAGAGGAAGTGGTGGATGCTAGTGAGCTTTCGGTTCACTTGATAAAAAGACGAGGCATTGTTCAGATTTTGCCGCCATTTCTGAAAAGGGTTTATTCACTAGCCCACATAGTCGACGACGAAGACAACGATTTCGATTGGGAAGCAGCTGCCAGAGCCGTCGACGTCGTCACCCACACCACCGAAAATCCCTCATCTTCCCATTTTGCTCTCCTCCCCCAATTCAGAAACAGCCATTTTTTCCAACCTTCAACAACAAGCCCAGTACTTCACGACAGACCACTCTCGCTAGTTAATTTTCCTGAGCGTGACTATCAATTTGCTATCACCAAGACAGCACTTTTTTCGAATACGCTGATGGCATTGCCAACCGGACTCTGGAAGACGCTTATTGCTGCGGTTGTTATGTATAACTACTTCAGATGGTTCCCTGATGGAAAGATAATCTTTGCTGCTCCTTCTCGACCACTTGTTACACAACAAATAGAAGCATGCCATAATATTGTAGGAATACCACAAGAATGGACAATTGATATGACAGAGGGAGCTGCAGGTTTTCAGATTGAATTTGCTGCATATTTTGCTGCGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

247

Amino Acids

27.74

Weight (kDa)

4.56

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	264, 312
AciI	CCGC	3 cut(s)	92, 224, 548
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	716
AcuI	CTGAAG	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	528
AgsI	TTSAA	4 cut(s)	111, 150, 402, 716
AluBI	AGCT	3 cut(s)	178, 299, 698
AluI	AGCT	3 cut(s)	178, 299, 698
AlwI	GGATC	1 cut(s)	72
ApeKI	GCWGC	7 cut(s)	296, 299, 545, 602, 698, 722, 734
ApoI	RAATTY	1 cut(s)	716
ArsI	GACNNNNNNTTYG	4 cut(s)	266, 298, 452, 484
AsuHPI	GGTGA	4 cut(s)	37, 58, 313, 469
AsuII	TTCGAA	1 cut(s)	497
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BbsI	GAAGAC	2 cut(s)	279, 539
BbvI	GCAGC	7 cut(s)	286, 308, 532, 589, 685, 709, 721
BccI	CCATC	4 cut(s)	115, 502, 567, 578
BceAI	ACGGC	1 cut(s)	293
BcgI	CGANNNNNNTGC	2 cut(s)	477, 511
BfaI	CTAG	3 cut(s)	171, 251, 440
BfmI	CTRYAG	1 cut(s)	699
BfuAI	ACCTGC	1 cut(s)	692
BisI	GCNGC	8 cut(s)	224, 297, 300, 546, 603, 699, 723, 735
BlsI	GCNGC	8 cut(s)	225, 298, 301, 547, 604, 700, 724, 736
BmcAI	AGTACT	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	578
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	2 cut(s)	279, 539
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	7 cut(s)	286, 308, 532, 589, 685, 709, 721
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	528
Bsp119I	TTCGAA	1 cut(s)	497
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	92, 224, 548
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	578
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	3 cut(s)	6, 111, 120
BstACI	GRCGYC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 731
BstNSI	RCATGY	1 cut(s)	645
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	7 cut(s)	286, 308, 532, 589, 685, 709, 721
BstV2I	GAAGAC	2 cut(s)	279, 539
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	692
Cac8I	GCNNGC	1 cut(s)	643
CseI	GACGC	2 cut(s)	544, 726
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	1 cut(s)	642
CviJI	RGCY	7 cut(s)	178, 254, 299, 308, 384, 411, 698
CviKI_1	RGCY	7 cut(s)	178, 254, 299, 308, 384, 411, 698
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	6, 111, 120
EarI	CTCTTC	3 cut(s)	6, 111, 120
EciI	GGCGGA	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	51
FaeI	CATG	1 cut(s)	645
FaiI	YATR	7 cut(s)	260, 557, 561, 643, 648, 686, 727
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FatI	CATG	1 cut(s)	641
FblI	GTMKAC	2 cut(s)	264, 312
Fnu4HI	GCNGC	8 cut(s)	224, 297, 300, 546, 603, 699, 723, 735
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	8 cut(s)	224, 297, 300, 546, 603, 699, 723, 735
FspBI	CTAG	3 cut(s)	171, 251, 440
GluI	GCNGC	8 cut(s)	224, 297, 300, 546, 603, 699, 723, 735
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	2 cut(s)	544, 726
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	645
HincII	GTYRAC	2 cut(s)	265, 313
HindII	GTYRAC	2 cut(s)	265, 313
HinfI	GANTC	3 cut(s)	97, 146, 525
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	4 cut(s)	37, 58, 313, 469
Hpy166II	GTNNAC	3 cut(s)	187, 265, 313
Hpy188I	TCNGA	5 cut(s)	216, 234, 377, 572, 711
Hpy188III	TCNNGA	4 cut(s)	422, 452, 529, 612
Hpy8I	GTNNAC	3 cut(s)	187, 265, 313
Hpy99I	CGWCG	7 cut(s)	137, 269, 272, 314, 317, 320, 742
HpyAV	CCTTC	2 cut(s)	408, 618
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	3 cut(s)	74, 701, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 731
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	610, 695
LpnPI	CCDG	8 cut(s)	60, 316, 426, 465, 514, 535, 594, 687
Lsp1109I	GCAGC	7 cut(s)	286, 308, 532, 589, 685, 709, 721
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	3 cut(s)	171, 251, 440
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	319, 458, 622
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	7 cut(s)	23, 99, 128, 137, 284, 339, 544
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	6 cut(s)	103, 371, 445, 467, 678, 716
MlyI	GAGTC	1 cut(s)	519
MmeI	TCCRAC	1 cut(s)	418
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	522
MunI	CAATTG	1 cut(s)	678
MwoI	GCNNNNNNNGC	2 cut(s)	305, 731
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	645
NlaIV	GGNNCC	1 cut(s)	578
NmuCI	GTSAC	2 cut(s)	319, 458
NspI	RCATGY	1 cut(s)	645
NspV	TTCGAA	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	97, 146
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	8 cut(s)	225, 298, 301, 547, 604, 700, 724, 736
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	670
SalI	GTCGAC	2 cut(s)	263, 311
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	8 cut(s)	224, 297, 300, 546, 603, 699, 723, 735
Sau3AI	GATC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	1 cut(s)	519
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	497
SgrDI	CGTCGACG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SphI	GCATGC	1 cut(s)	645
Sse9I	AATT	6 cut(s)	103, 371, 445, 467, 678, 716
SsiI	CCGC	3 cut(s)	92, 224, 548
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	3 cut(s)	171, 251, 440
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	6 cut(s)	135, 264, 285, 312, 497, 613
TasI	AATT	6 cut(s)	103, 371, 445, 467, 678, 716
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	97, 146
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	319, 458
TseI	GCWGC	7 cut(s)	296, 299, 545, 602, 698, 722, 734
Tsp45I	GTSAC	2 cut(s)	319, 458
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	716
XceI	RCATGY	1 cut(s)	645
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmiI	GTMKAC	2 cut(s)	264, 312
XspI	CTAG	3 cut(s)	171, 251, 440
ZraI	GACGTC	1 cut(s)	316
ZrmI	AGTACT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.