Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Reverse (-)

49640306 .. 49642103

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCTTGAGGAAAAGGAAACAGTGGTGAAACCTCTTGTTGTGGAGGTGAAATCTGAATCGTTGGAGCCTGTTGCAGGGGATCTTAAGGTGGTGGAGAAACATAATTCTTCAAAGGAAGAGATGGAAGAGGCTGTTGATGTGAAATATTCAATGGAGGAAGTGGTGGATGCTTGGTTTATTCACAAGCCCACACCCATCCGCATTTCAGTCACAGCTACCTCAATGACCTCCACCGATCCTCACCACATAGTCGACGACGACGAAGATGACGATTTCGATTGGGAAGCAGCTGCCAGAGCCGTCGACGTCGTCACCCAGACCACCGCAAAGCCCTCATCTTCCCATTTTGCCCCTCCTCCCCCAATTCAGAAACCACCAGTTCCTCCAACCTTCAACAACAAGCCCAGTACTTCACGGCAGACCACTCTCGATAGGTTCATTTGGAAGCCCGCCCCAAAGCCTCAGCCCGAAATTCGAGACTGCGGCGATGAGAGAGTGTCCCGTGTTTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

4.82

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
AccI	GTMKAC	2 cut(s)	252, 303
AciI	CCGC	4 cut(s)	199, 324, 450, 483
AclWI	GGATC	2 cut(s)	87, 230
AcsI	RAATTY	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	111, 150, 394, 510
AluBI	AGCT	2 cut(s)	215, 290
AluI	AGCT	2 cut(s)	215, 290
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	87, 230
ApeKI	GCWGC	2 cut(s)	287, 290
ApoI	RAATTY	1 cut(s)	471
AsuHPI	GGTGA	4 cut(s)	37, 58, 233, 304
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	277, 299
BccI	CCATC	2 cut(s)	115, 203
BceAI	ACGGC	2 cut(s)	284, 431
BcoDI	GTCTC	1 cut(s)	471
BfrI	CTTAAG	1 cut(s)	83
BisI	GCNGC	3 cut(s)	288, 291, 484
BlsI	GCNGC	3 cut(s)	289, 292, 485
BmcAI	AGTACT	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	377, 405
BseGI	GGATG	2 cut(s)	172, 195
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	377, 405
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	277, 299
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	484
Bsp143I	GATC	2 cut(s)	79, 235
BspACI	CCGC	4 cut(s)	199, 324, 450, 483
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	87, 230
BspTI	CTTAAG	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	377, 405
BssMI	GATC	2 cut(s)	79, 235
BssNI	GRCGYC	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	111, 120
BstACI	GRCGYC	1 cut(s)	306
BstAFI	CTTAAG	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	172, 195
BstKTI	GATC	2 cut(s)	82, 238
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	2 cut(s)	79, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	277, 299
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	172, 195
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	408
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	2 cut(s)	81, 237
DpnII	GATC	2 cut(s)	79, 235
Eam1104I	CTCTTC	2 cut(s)	111, 120
EarI	CTCTTC	2 cut(s)	111, 120
EcoNI	CCTNNNNNAGG	1 cut(s)	72
FaiI	YATR	2 cut(s)	102, 248
FaqI	GGGAC	1 cut(s)	484
FauI	CCCGC	1 cut(s)	457
FblI	GTMKAC	2 cut(s)	252, 303
Fnu4HI	GCNGC	3 cut(s)	288, 291, 484
FokI	GGATG	2 cut(s)	179, 182
Fsp4HI	GCNGC	3 cut(s)	288, 291, 484
GluI	GCNGC	3 cut(s)	288, 291, 484
Hin1I	GRCGYC	1 cut(s)	306
HincII	GTYRAC	2 cut(s)	253, 304
HindII	GTYRAC	2 cut(s)	253, 304
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	4 cut(s)	37, 58, 233, 304
Hpy166II	GTNNAC	2 cut(s)	253, 304
Hpy188I	TCNGA	2 cut(s)	55, 369
Hpy188III	TCNNGA	2 cut(s)	428, 476
Hpy8I	GTNNAC	2 cut(s)	253, 304
Hpy99I	CGWCG	6 cut(s)	257, 260, 263, 305, 308, 311
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	79, 235
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	60, 81, 307, 329, 390, 418
Lsp1109I	GCAGC	2 cut(s)	277, 299
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	208, 310
MalI	GATC	2 cut(s)	81, 237
MboI	GATC	2 cut(s)	79, 235
MboII	GAAGA	5 cut(s)	99, 128, 137, 275, 330
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	4 cut(s)	103, 363, 471, 511
MmeI	TCCRAC	2 cut(s)	42, 410
MseI	TTAA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	2 cut(s)	79, 235
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	208, 310
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 267
PfeI	GAWTC	1 cut(s)	56
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	289, 292, 485
PspN4I	GGNNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SalI	GTCGAC	2 cut(s)	251, 302
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	288, 291, 484
Sau3AI	GATC	2 cut(s)	79, 235
ScaI	AGTACT	1 cut(s)	409
SfaNI	GCATC	1 cut(s)	157
SgrDI	CGTCGACG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	5, 83
SmoI	CTYRAG	2 cut(s)	5, 83
Sse9I	AATT	4 cut(s)	103, 363, 471, 511
SsiI	CCGC	4 cut(s)	199, 324, 450, 483
SspI	AATATT	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	5 cut(s)	252, 276, 303, 429, 475
TasI	AATT	4 cut(s)	103, 363, 471, 511
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	208, 310
TseI	GCWGC	2 cut(s)	287, 290
Tsp45I	GTSAC	2 cut(s)	208, 310
TspDTI	ATGAA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	308
Vha464I	CTTAAG	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	72
XapI	RAATTY	1 cut(s)	471
XmiI	GTMKAC	2 cut(s)	252, 303
ZraI	GACGTC	1 cut(s)	307
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.