Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Forward (+)

1940275 .. 1941332

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTCCGGATGGAGCATGCCCTCTTCAGCATGTCCTCATATTTTTGCAAAATTCTAACACATTGCTCACCCAATCACCCCTGGAGAGGCAGCCAAGCAGTTCTGCCACATATTCACCTGATTCTGCGGCACCAACAATGAGGACAACTGAAACTGGAAGTTCTTGTGGGAAACCATCCTTCTCTCTCCAAACTCCTCAAAGCGATTGTACAAATCAGCCAAACAAGATGGATTTGAAGTCCTTCCAAATGAACTGTAACGCTGAAGGCACACCTTGTACAACTGGTATTTCCCCAGGATATGAGATTGAAAGCCGAAAAAGAAAATTGAGTTCTCATCATTCAAGATCTGTTCCTGCAGTCAACTTGGAGCGAGAGTTCTCACGCCAGTCAGAGGCTGCAGGCAGAGACTTACAGCACAATGATGCAAATGGGGACGTGCTTTATGATGATCTATTTTTTGAGGGCCTTGATCGTGCCGCAGTGGAAGCGCAAGCTACATTGCTTCTTAAACAGAAATCAGAACTGCCAAGGCAGAAGCACCTACAACATTCTCCGACGTTTGATCTTGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

193

Amino Acids

21.05

Weight (kDa)

5.84

Isoelectric Point (pI)

72.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	2 cut(s)	128, 480
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	2 cut(s)	11, 285
AfaI	GTAC	2 cut(s)	211, 280
AfiI	CCNNNNNNNGG	2 cut(s)	87, 394
AgsI	TTSAA	3 cut(s)	238, 311, 345
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	2 cut(s)	81, 295
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw26I	GTCTC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	398
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	2 cut(s)	91, 398
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	3 cut(s)	61, 69, 108
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	103, 385
BccI	CCATC	3 cut(s)	5, 184, 223
BciT130I	CCWGG	2 cut(s)	83, 297
BcoDI	GTCTC	1 cut(s)	402
BfmI	CTRYAG	2 cut(s)	357, 399
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	4 cut(s)	92, 129, 399, 480
BlsI	GCNGC	4 cut(s)	93, 130, 400, 481
Bme1390I	CCNGG	2 cut(s)	83, 297
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	2 cut(s)	6, 132
BmrFI	CCNGG	2 cut(s)	83, 297
BmsI	GCATC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	81, 295, 530
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 394
Bse1I	ACTGG	3 cut(s)	160, 289, 388
Bse3DI	GCAATG	2 cut(s)	62, 500
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	2 cut(s)	83, 297
BseDI	CCNNGG	3 cut(s)	81, 295, 530
BseGI	GGATG	2 cut(s)	16, 176
BseLI	CCNNNNNNNGG	2 cut(s)	87, 394
BseMI	GCAATG	2 cut(s)	62, 500
BseNI	ACTGG	3 cut(s)	160, 289, 388
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	103, 385
BshFI	GGCC	1 cut(s)	468
BshNI	GGYRCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	87, 394
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	468
Bsp13I	TCCGGA	1 cut(s)	7
Bsp1407I	TGTACA	2 cut(s)	209, 278
Bsp143I	GATC	4 cut(s)	347, 451, 472, 565
BspACI	CCGC	2 cut(s)	128, 480
BspANI	GGCC	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	6, 132
BspMAI	CTGCAG	2 cut(s)	361, 403
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	2 cut(s)	62, 500
BsrGI	TGTACA	2 cut(s)	209, 278
BsrI	ACTGG	3 cut(s)	160, 289, 388
BssECI	CCNNGG	3 cut(s)	81, 295, 530
BssMI	GATC	4 cut(s)	347, 451, 472, 565
BssT1I	CCWWGG	1 cut(s)	530
Bst2UI	CCWGG	2 cut(s)	83, 297
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	30
BstAUI	TGTACA	2 cut(s)	209, 278
BstC8I	GCNNGC	3 cut(s)	19, 403, 495
BstF5I	GGATG	2 cut(s)	16, 176
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	4 cut(s)	350, 454, 475, 568
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	4 cut(s)	347, 451, 472, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	2 cut(s)	83, 297
BstNSI	RCATGY	2 cut(s)	21, 35
BstSCI	CCNGG	2 cut(s)	81, 295
BstSFI	CTRYAG	2 cut(s)	357, 399
BstV1I	GCAGC	2 cut(s)	103, 385
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	468
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	16, 176
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	3 cut(s)	19, 403, 495
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	210, 279
CviAII	CATG	2 cut(s)	18, 32
CviJI	RGCY	7 cut(s)	5, 94, 220, 315, 398, 468, 497
CviKI_1	RGCY	7 cut(s)	5, 94, 220, 315, 398, 468, 497
CviQI	GTAC	2 cut(s)	210, 279
DpnI	GATC	4 cut(s)	349, 453, 474, 567
DpnII	GATC	4 cut(s)	347, 451, 472, 565
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	11, 285
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	81, 295
EcoT14I	CCWWGG	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	2 cut(s)	21, 35
FaiI	YATR	7 cut(s)	19, 33, 41, 112, 303, 447, 577
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	2 cut(s)	17, 31
Fnu4HI	GCNGC	4 cut(s)	92, 129, 399, 480
FokI	GGATG	2 cut(s)	23, 163
Fsp4HI	GCNGC	4 cut(s)	92, 129, 399, 480
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	4 cut(s)	92, 129, 399, 480
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	2 cut(s)	21, 35
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	61, 69, 108
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	394, 523, 558
Hpy188III	TCNNGA	2 cut(s)	8, 345
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	562
HpyAV	CCTTC	3 cut(s)	190, 253, 260
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	438, 560
HpyCH4V	TGCA	4 cut(s)	49, 359, 401, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpySE526I	ACGT	2 cut(s)	438, 560
Hsp92II	CATG	2 cut(s)	21, 35
HspAI	GCGC	1 cut(s)	491
Kpn2I	TCCGGA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	347, 451, 472, 565
LmnI	GCTCC	3 cut(s)	10, 14, 370
Lsp1109I	GCAGC	2 cut(s)	103, 385
LweI	GCATC	1 cut(s)	415
MaeII	ACGT	2 cut(s)	438, 560
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	4 cut(s)	349, 453, 474, 567
MboI	GATC	4 cut(s)	347, 451, 472, 565
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	2 cut(s)	52, 326
MnlI	CCTC	7 cut(s)	33, 47, 81, 135, 207, 388, 457
MroI	TCCGGA	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	83, 297
MvaI	CCWGG	2 cut(s)	83, 297
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	4 cut(s)	347, 451, 472, 565
NlaIII	CATG	2 cut(s)	21, 35
NlaIV	GGNNCC	2 cut(s)	6, 132
NspI	RCATGY	2 cut(s)	21, 35
PaeI	GCATGC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	93, 130, 400, 481
Psp6I	CCWGG	2 cut(s)	81, 295
PspGI	CCWGG	2 cut(s)	81, 295
PspN4I	GGNNCC	2 cut(s)	6, 132
PspPI	GGNCC	1 cut(s)	466
PstI	CTGCAG	2 cut(s)	361, 403
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	2 cut(s)	211, 280
RsaNI	GTAC	2 cut(s)	210, 279
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	4 cut(s)	92, 129, 399, 480
Sau3AI	GATC	4 cut(s)	347, 451, 472, 565
Sau96I	GGNCC	1 cut(s)	466
ScrFI	CCNGG	2 cut(s)	83, 297
SetI	ASST	6 cut(s)	121, 277, 441, 499, 546, 563
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	2 cut(s)	357, 399
SmiMI	CAYNNNNRTG	1 cut(s)	423
SphI	GCATGC	1 cut(s)	21
Sse9I	AATT	2 cut(s)	52, 326
SsiI	CCGC	2 cut(s)	128, 480
StyD4I	CCNGG	2 cut(s)	81, 295
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	441, 563
TasI	AATT	2 cut(s)	52, 326
TatI	WGTACW	2 cut(s)	209, 278
TauI	GCSGC	2 cut(s)	131, 482
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	489
TseI	GCWGC	2 cut(s)	91, 398
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	489
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	2 cut(s)	21, 35
XmnI	GAANNNNTTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.