Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005913.1

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1808

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005913.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 469 bp

atgacctccaccgatcctcaccacatagtcgacgacgacgaagaagacgatttcgattgggaagcagctgccagagccgtcgacgtcgtcacccagaccaccgcaaagcccacatcttcccattttgcccctcctcccccaattcagaaaccaccgtttcctccaaccttcaacaacaagcccagtacttcacggcagaccactctcgataggttcattgggaagcccgccccaaagcctctgcccgaaattcgagactgcggcgatgagagagtgtcccgtgttcaaattgatgccgaaaaagccaacacttggatgtacccagttaattttcctgggcgtgactatcaatttgctatcaccaagacggcacttttttcgaatacgctggtggcattgccaaccggactcgggaagacacttatcgctgcagttgttatgtataactacttcagatggtttcctgatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

5.32

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccB7I	CCANNNNNTGG	1 cut(s)	312
AccI	GTMKAC	2 cut(s)	30, 81
AciI	CCGC	3 cut(s)	102, 228, 261
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	187, 320
AfiI	CCNNNNNNNGG	2 cut(s)	312, 411
AgsI	TTSAA	2 cut(s)	172, 287
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	410
ApeKI	GCWGC	3 cut(s)	65, 68, 428
ApoI	RAATTY	1 cut(s)	249
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AsuHPI	GGTGA	3 cut(s)	11, 82, 352
AsuII	TTCGAA	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	410
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BbsI	GAAGAC	2 cut(s)	51, 422
BbvI	GCAGC	3 cut(s)	55, 77, 415
BccI	CCATC	1 cut(s)	450
BceAI	ACGGC	3 cut(s)	62, 209, 384
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	4 cut(s)	66, 69, 262, 429
BlsI	GCNGC	4 cut(s)	67, 70, 263, 430
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	336
BmrI	ACTGGG	2 cut(s)	177, 317
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	2 cut(s)	177, 317
BpiI	GAAGAC	2 cut(s)	51, 422
Bpu14I	TTCGAA	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 411
Bse1I	ACTGG	2 cut(s)	183, 323
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	312, 411
BseMI	GCAATG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	183, 323
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	55, 77, 415
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	312, 411
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	380
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	3 cut(s)	102, 228, 261
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	183, 323
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 302
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	55, 77, 415
BstV2I	GAAGAC	2 cut(s)	51, 422
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	186, 319
CviJI	RGCY	7 cut(s)	68, 77, 109, 181, 226, 238, 305
CviKI_1	RGCY	7 cut(s)	68, 77, 109, 181, 226, 238, 305
CviQI	GTAC	2 cut(s)	186, 319
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	334
FaiI	YATR	3 cut(s)	26, 440, 444
FaqI	GGGAC	1 cut(s)	262
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	2 cut(s)	30, 81
Fnu4HI	GCNGC	4 cut(s)	66, 69, 262, 429
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	66, 69, 262, 429
GluI	GCNGC	4 cut(s)	66, 69, 262, 429
HapII	CCGG	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	84
HincII	GTYRAC	2 cut(s)	31, 82
HindII	GTYRAC	2 cut(s)	31, 82
HinfI	GANTC	1 cut(s)	408
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	3 cut(s)	11, 82, 352
Hpy166II	GTNNAC	2 cut(s)	31, 82
Hpy188I	TCNGA	2 cut(s)	147, 455
Hpy188III	TCNNGA	4 cut(s)	206, 254, 412, 464
Hpy8I	GTNNAC	2 cut(s)	31, 82
Hpy99I	CGWCG	6 cut(s)	35, 38, 41, 83, 86, 89
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 302
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	8 cut(s)	85, 107, 196, 321, 336, 348, 374, 418
Lsp1109I	GCAGC	3 cut(s)	55, 77, 415
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	88, 341
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	4 cut(s)	53, 56, 108, 427
MluCI	AATT	5 cut(s)	141, 249, 288, 328, 350
MlyI	GAGTC	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	6 cut(s)	16, 27, 141, 144, 171, 249
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	74, 302
NdeII	GATC	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	88, 341
NspV	TTCGAA	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 45
PflFI	GACNNNGTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	4 cut(s)	67, 70, 263, 430
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	187, 320
RsaNI	GTAC	2 cut(s)	186, 319
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	2 cut(s)	29, 80
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	4 cut(s)	66, 69, 262, 429
Sau3AI	GATC	1 cut(s)	13
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	5 cut(s)	8, 70, 87, 170, 215
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	380
SgrDI	CGTCGACG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	141, 249, 288, 328, 350
SsiI	CCGC	3 cut(s)	102, 228, 261
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	6 cut(s)	30, 54, 81, 207, 253, 380
TasI	AATT	5 cut(s)	141, 249, 288, 328, 350
TatI	WGTACW	1 cut(s)	185
TauI	GCSGC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	2 cut(s)	88, 341
TseI	GCWGC	3 cut(s)	65, 68, 428
Tsp45I	GTSAC	2 cut(s)	88, 341
TspDTI	ATGAA	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	249
XmiI	GTMKAC	2 cut(s)	30, 81
ZraI	GACGTC	1 cut(s)	85
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.