Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005913.1

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Reverse (-)

79847 .. 81961

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005913.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgacctccaccgatcctcaccacatagtcgacgacgacgatttcgattgggaagcagctgccagagccgtcgatgtcgtcacccagaccaccgcaaagccctcatcttcccattttgcccctcctcccccaattcagaaaccaccgtttcttccaacattcaacaacaagtccagtacttcacggcagaccactctcgataggttcattgggaagcccgccccaaagcctcagcccgaaattcgagactgcggcgatgagagagtgtcccgcgttcaacttgatgccgaaaaagccaacacttggatgtacccaggttcaaattcactttctctgcctagttttgttgagtcaatatgcgaaaattgggctattagtatttatttcctgaattttggttgttcacttgttctgatcaatgcagttaattttcctgggcgtgactatcaatttgctatcaccaagacagcacttttttcgaatacgctggtggcattgccaaccggactcgggaagacacttatcgctgcagttgttatgtataactacatcagatggtttcctgatggtttcctgtataactaccttatcgctgcatttgtttatgtttatgggaagtgcatatgggattccacaaattgtgatgtttggtatgcgagagatgaactcgtcaagaaggcttccgaagctctcacaactatggatgagaacatctgcagtggtgcattttgcaggaggaaatctggaagttggtttagtttaggacaccccacaatatgtgaggaagaaaaacgtggcaatactgaaattgatttcatttgggaaacagaagaatcttctgcctctcctcctaattcccacttatctaaactcggcaagttgccaagaaagagtgtttccaaacttgggaaggataatgatgtttcttcttctaccccgaaaaattcagctccaatctcttccagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

322

Amino Acids

35.85

Weight (kDa)

6.0

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	1 cut(s)	273
AciI	CCGC	4 cut(s)	93, 219, 252, 271
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	4 cut(s)	240, 322, 391, 943
AfaI	GTAC	2 cut(s)	178, 311
AfiI	CCNNNNNNNGG	3 cut(s)	303, 510, 906
AgsI	TTSAA	3 cut(s)	163, 278, 321
AjnI	CCWGG	2 cut(s)	313, 433
AluBI	AGCT	3 cut(s)	59, 689, 950
AluI	AGCT	3 cut(s)	59, 689, 950
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	509
ApeKI	GCWGC	4 cut(s)	56, 59, 527, 593
ApoI	RAATTY	4 cut(s)	240, 322, 391, 943
ArsI	GACNNNNNNTTYG	4 cut(s)	26, 58, 434, 466
AsuHPI	GGTGA	3 cut(s)	11, 73, 451
AsuII	TTCGAA	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	4 cut(s)	46, 68, 514, 580
BccI	CCATC	2 cut(s)	549, 560
BceAI	ACGGC	2 cut(s)	53, 200
BcgI	CGANNNNNNTGC	2 cut(s)	459, 493
BciT130I	CCWGG	2 cut(s)	315, 435
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	2 cut(s)	528, 715
BisI	GCNGC	5 cut(s)	57, 60, 253, 528, 594
BlsI	GCNGC	5 cut(s)	58, 61, 254, 529, 595
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	315, 435
BmeT110I	CYCGRG	1 cut(s)	509
BmrFI	CCNGG	2 cut(s)	315, 435
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	521
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	313, 434
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 510, 906
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	494
BseBI	CCWGG	2 cut(s)	315, 435
BseDI	CCNNGG	2 cut(s)	313, 434
BseGI	GGATG	2 cut(s)	312, 709
BseLI	CCNNNNNNNGG	3 cut(s)	303, 510, 906
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	114, 837
BseXI	GCAGC	4 cut(s)	46, 68, 514, 580
Bsh1236I	CGCG	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	3 cut(s)	303, 510, 906
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	479
Bsp143I	GATC	2 cut(s)	13, 414
BspACI	CCGC	4 cut(s)	93, 219, 252, 271
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	273
BspMAI	CTGCAG	2 cut(s)	532, 719
BspPI	GGATC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	313, 434
BssMI	GATC	2 cut(s)	13, 414
Bst2UI	CCWGG	2 cut(s)	315, 435
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	964
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	312, 709
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	2 cut(s)	16, 417
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	2 cut(s)	13, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 293, 686
BstNI	CCWGG	2 cut(s)	315, 435
BstSCI	CCNGG	2 cut(s)	313, 433
BstSFI	CTRYAG	2 cut(s)	528, 715
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	4 cut(s)	46, 68, 514, 580
BstV2I	GAAGAC	1 cut(s)	521
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	312, 709
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	177, 310
CviQI	GTAC	2 cut(s)	177, 310
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	15, 416
DpnII	GATC	2 cut(s)	13, 414
Eam1104I	CTCTTC	1 cut(s)	964
EarI	CTCTTC	1 cut(s)	964
Eco88I	CYCGRG	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	313, 433
FaqI	GGGAC	1 cut(s)	253
FauI	CCCGC	2 cut(s)	226, 278
FauNDI	CATATG	1 cut(s)	623
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	5 cut(s)	57, 60, 253, 528, 594
FokI	GGATG	2 cut(s)	319, 716
Fsp4HI	GCNGC	5 cut(s)	57, 60, 253, 528, 594
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	5 cut(s)	57, 60, 253, 528, 594
HapII	CCGG	1 cut(s)	504
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	350, 507, 629, 833
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	3 cut(s)	11, 73, 451
Hpy166II	GTNNAC	2 cut(s)	31, 404
Hpy188I	TCNGA	4 cut(s)	138, 414, 554, 685
Hpy188III	TCNNGA	8 cut(s)	197, 245, 388, 511, 563, 673, 744, 963
Hpy8I	GTNNAC	2 cut(s)	31, 404
Hpy99I	CGWCG	4 cut(s)	35, 38, 41, 74
HpyAV	CCTTC	2 cut(s)	670, 904
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	7 cut(s)	422, 530, 596, 621, 717, 725, 732
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 293, 686
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	13, 414
LmnI	GCTCC	1 cut(s)	955
Lsp1109I	GCAGC	4 cut(s)	46, 68, 514, 580
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	2 cut(s)	79, 440
MalI	GATC	2 cut(s)	15, 416
MboI	GATC	2 cut(s)	13, 414
MboII	GAAGA	9 cut(s)	99, 143, 526, 797, 828, 842, 918, 921, 951
MlyI	GAGTC	2 cut(s)	359, 501
MmeI	TCCRAC	1 cut(s)	179
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	2 cut(s)	305, 698
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	315, 435
MvaI	CCWGG	2 cut(s)	315, 435
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	65, 293, 686
NdeI	CATATG	1 cut(s)	623
NdeII	GATC	2 cut(s)	13, 414
NmeAIII	GCCGAG	1 cut(s)	852
NmuCI	GTSAC	2 cut(s)	79, 440
NspV	TTCGAA	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 42
PfeI	GAWTC	2 cut(s)	629, 833
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	5 cut(s)	58, 61, 254, 529, 595
PleI	GAGTC	2 cut(s)	358, 501
PpsI	GAGTC	2 cut(s)	358, 501
Psp6I	CCWGG	2 cut(s)	313, 433
PspGI	CCWGG	2 cut(s)	313, 433
PstI	CTGCAG	2 cut(s)	532, 719
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	2 cut(s)	178, 311
RsaNI	GTAC	2 cut(s)	177, 310
RseI	CAYNNNNRTG	2 cut(s)	305, 698
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	5 cut(s)	57, 60, 253, 528, 594
Sau3AI	GATC	2 cut(s)	13, 414
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	2 cut(s)	359, 501
ScrFI	CCNGG	2 cut(s)	315, 435
SetI	ASST	8 cut(s)	8, 61, 206, 319, 588, 691, 796, 952
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	2 cut(s)	528, 715
SfuI	TTCGAA	1 cut(s)	479
SmiMI	CAYNNNNRTG	2 cut(s)	305, 698
SsiI	CCGC	4 cut(s)	93, 219, 252, 271
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	313, 433
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	6 cut(s)	30, 45, 72, 198, 244, 479
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	629, 833
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	2 cut(s)	79, 440
TseI	GCWGC	4 cut(s)	56, 59, 527, 593
Tsp45I	GTSAC	2 cut(s)	79, 440
TspDTI	ATGAA	3 cut(s)	196, 678, 805
TspRI	CASTG	1 cut(s)	724
Van91I	CCANNNNNTGG	1 cut(s)	303
XapI	RAATTY	4 cut(s)	240, 322, 391, 943
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.