Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Reverse (-)

34561266 .. 34565406

Gene Structure 4141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG333000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGACCTCCACCGATCCTCACCACATAGTCGACGACGACGATTTCGATTGGGAAGCAGCTGCCAGAGTCGTCGACGTCGTCACCCAGACCACCGCAAATCCCTCATCTTCCCATTTTGCCCCTCCTCCCCCAATTCAGAAACCACCATTTCCTCCAATCTCCCACAACAAGCCCGCAAATTCACGGCAGACCACTCTCGATAGGTTCATTGGGAAGCCCGCCCCAAAGCCTCAGCCCGAAATTCGAGACTGCGGCGATGAGAGAGTGTCCCGTGTTCAAATTGATGCCGAAAAAGCCAATACTTGGATGTACCCAGTTAATTTTCCTGAGCGTGACTATCAATTTGCTATCACCAAGACAGCACTTTTTTCGAATACGCTGGTGGCATTGCCAACCGGACTCGGGAAGACGCTTATTTCTGCTGTTGTTATGTATAACTACTTCAGATGGTTCCCTGATGGAAAGATAGTCTTTGCTGCTCCTTCTCGACCACTTGTTACACAACAAATAGAAGCATGCCATAATATTGTAGGAATACGACAAGAATGGACAATTGATATGACAGGTCAGATAAGTCCTACAAAAAGAGCATGCTTTTGGAAAACTAAACTAGTTTTCTTTGTTACTCCACAAGTGCTGGAGAAGGACATTCAGTCTGGTATATTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

223

Amino Acids

25.11

Weight (kDa)

6.96

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	117 - 217	4.3e-08	DEAD/DEAH box helicase
ResIII	PF04851	123 - 217	2.7e-09	Type III restriction enzyme, res subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccI	GTMKAC	2 cut(s)	30, 72
AciI	CCGC	4 cut(s)	93, 174, 219, 252
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	178, 240
AcuI	CTGAAG	1 cut(s)	427
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	303, 402
AgsI	TTSAA	1 cut(s)	278
AhdI	GACNNNNNGTC	1 cut(s)	652
AhlI	ACTAGT	1 cut(s)	610
AluBI	AGCT	2 cut(s)	59, 669
AluI	AGCT	2 cut(s)	59, 669
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	401
ApeKI	GCWGC	3 cut(s)	56, 59, 476
ApoI	RAATTY	2 cut(s)	178, 240
ArsI	GACNNNNNNTTYG	4 cut(s)	26, 58, 326, 358
AsuHPI	GGTGA	3 cut(s)	11, 73, 343
AsuII	TTCGAA	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	401
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbsI	GAAGAC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	46, 68, 463
BccI	CCATC	2 cut(s)	441, 452
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BcoDI	GTCTC	1 cut(s)	240
BcuI	ACTAGT	1 cut(s)	610
BfaI	CTAG	1 cut(s)	611
BisI	GCNGC	4 cut(s)	57, 60, 253, 477
BlsI	GCNGC	4 cut(s)	58, 61, 254, 478
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmeT110I	CYCGRG	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	659
Bpu10I	CCTNAGC	2 cut(s)	231, 327
Bpu14I	TTCGAA	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 402
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	386
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	303, 402
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	245, 318
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	46, 68, 463
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	303, 402
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	4 cut(s)	93, 174, 219, 252
BspCNI	CTCAG	2 cut(s)	244, 319
BspLI	GGNNCC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	371
BstC8I	GCNNGC	4 cut(s)	174, 219, 517, 592
BstDEI	CTNAG	2 cut(s)	231, 327
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	2 cut(s)	519, 594
BstV1I	GCAGC	3 cut(s)	46, 68, 463
BstV2I	GAAGAC	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	312
Cac8I	GCNNGC	4 cut(s)	174, 219, 517, 592
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	516, 591
CviJI	RGCY	7 cut(s)	59, 172, 217, 229, 235, 296, 669
CviKI_1	RGCY	7 cut(s)	59, 172, 217, 229, 235, 296, 669
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	231, 327
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	652
Eam1105I	GACNNNNNGTC	1 cut(s)	652
Eco57I	CTGAAG	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	401
FaeI	CATG	2 cut(s)	519, 594
FaiI	YATR	8 cut(s)	26, 431, 435, 517, 522, 560, 592, 662
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	515, 590
FauI	CCCGC	2 cut(s)	181, 226
FblI	GTMKAC	2 cut(s)	30, 72
Fnu4HI	GCNGC	4 cut(s)	57, 60, 253, 477
FokI	GGATG	1 cut(s)	319
Fsp4HI	GCNGC	4 cut(s)	57, 60, 253, 477
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	4 cut(s)	57, 60, 253, 477
GsuI	CTGGAG	1 cut(s)	659
HapII	CCGG	1 cut(s)	396
HgaI	GACGC	1 cut(s)	418
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	519, 594
HincII	GTYRAC	2 cut(s)	31, 73
HindII	GTYRAC	2 cut(s)	31, 73
HinfI	GANTC	2 cut(s)	66, 399
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	3 cut(s)	11, 73, 343
Hpy166II	GTNNAC	2 cut(s)	31, 73
Hpy188I	TCNGA	3 cut(s)	138, 446, 570
Hpy188III	TCNNGA	5 cut(s)	197, 245, 326, 403, 486
Hpy8I	GTNNAC	2 cut(s)	31, 73
Hpy99I	CGWCG	6 cut(s)	35, 38, 41, 74, 77, 80
HpyAV	CCTTC	2 cut(s)	492, 637
HpyCH4IV	ACGT	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	231, 327
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	519, 594
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	3 cut(s)	46, 68, 463
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	4 cut(s)	79, 332, 496, 622
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	99, 418
MfeI	CAATTG	1 cut(s)	552
MluCI	AATT	7 cut(s)	132, 178, 240, 279, 319, 341, 552
MlyI	GAGTC	2 cut(s)	75, 393
MnlI	CCTC	7 cut(s)	16, 27, 112, 132, 135, 162, 240
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	59, 669
MspI	CCGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	519, 594
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	79, 332
NspI	RCATGY	2 cut(s)	519, 594
NspV	TTCGAA	1 cut(s)	371
PaeI	GCATGC	2 cut(s)	519, 594
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 42, 75
PflFI	GACNNNGTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	58, 61, 254, 478
PleI	GAGTC	2 cut(s)	74, 393
PpsI	GAGTC	2 cut(s)	74, 393
PspN4I	GGNNCC	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	77
PvuII	CAGCTG	2 cut(s)	59, 669
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SalI	GTCGAC	2 cut(s)	29, 71
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	57, 60, 253, 477
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	2 cut(s)	75, 393
SetI	ASST	6 cut(s)	8, 61, 78, 206, 568, 671
SfaNI	GCATC	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	371
SgrDI	CGTCGACG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	610
SphI	GCATGC	2 cut(s)	519, 594
Sse9I	AATT	7 cut(s)	132, 178, 240, 279, 319, 341, 552
SsiI	CCGC	4 cut(s)	93, 174, 219, 252
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	1 cut(s)	611
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	7 cut(s)	30, 45, 72, 198, 244, 371, 487
TasI	AATT	7 cut(s)	132, 178, 240, 279, 319, 341, 552
TauI	GCSGC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	79, 332
TseI	GCWGC	3 cut(s)	56, 59, 476
Tsp45I	GTSAC	2 cut(s)	79, 332
TspDTI	ATGAA	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	303
XapI	RAATTY	2 cut(s)	178, 240
XceI	RCATGY	2 cut(s)	519, 594
XmiI	GTMKAC	2 cut(s)	30, 72
XspI	CTAG	1 cut(s)	611
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.