Rh7DG341000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002489
Physical Location & Seq
Reverse (-)
44945845 .. 44947186
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG341000.1

Sequence Viewer

Length: 189 bp
ATGAAGGAACGGCACCGACTGGGGGCGCCGGAGGCAGAGCAAGTGATATCTAAATCGTTGGGTCTTATTGCTGGGAATTTTGAGGTGGTGGAGAATCCTAATTCTTCAAATGAAGAGATGGAAGAGGCTGTCAATGTGAAAAATTCAATCCCTTACGAACAAGTTATTAATGGATGTACTGCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.84

Weight (kDa)

4.63

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 12, 25
AcsI RAATTY 2 cut(s) 76, 142
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 2 cut(s) 108, 147
ApoI RAATTY 2 cut(s) 76, 142
AseI ATTAAT 1 cut(s) 168
AspLEI GCGC 1 cut(s) 28
BanI GGYRCC 2 cut(s) 12, 25
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 14, 27
BmrI ACTGGG 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 71
BshNI GGYRCC 2 cut(s) 12, 25
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 14, 27
BspT107I GGYRCC 2 cut(s) 12, 25
BsrI ACTGG 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 26
Bst6I CTCTTC 2 cut(s) 108, 117
BstACI GRCGYC 1 cut(s) 26
BstF5I GGATG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 179
CfoI GCGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 177
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
CviQI GTAC 1 cut(s) 177
DinI GGCGCC 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 108, 117
EarI CTCTTC 2 cut(s) 108, 117
Eco32I GATATC 1 cut(s) 48
EcoRV GATATC 1 cut(s) 48
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
GlaI GCGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 29
HapII CCGG 1 cut(s) 29
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 1 cut(s) 26
KasI GGCGCC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 5, 42, 57
MboII GAAGA 3 cut(s) 96, 125, 134
MluCI AATT 3 cut(s) 76, 100, 142
Mly113I GGCGCC 1 cut(s) 26
MnlI CCTC 3 cut(s) 25, 76, 118
MseI TTAA 1 cut(s) 168
MspI CCGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 32
NarI GGCGCC 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 14, 27
PfeI GAWTC 1 cut(s) 94
PluTI GGCGCC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 14, 27
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 168
SetI ASST 1 cut(s) 87
SfoI GGCGCC 1 cut(s) 27
SgeI CNNG 5 cut(s) 32, 41, 53, 84, 173
Sse9I AATT 3 cut(s) 76, 100, 142
SspDI GGCGCC 1 cut(s) 25
TasI AATT 3 cut(s) 76, 100, 142
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 17, 126
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 2 cut(s) 76, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.