Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Forward (+)

36233700 .. 36236889

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36170.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGACTTCCACCAATCCTCACCATGTCATCGACGACGACGACGACGACAATTTTGATTGGGAAGCGGCGGCGAGAGAAATCGACGTGGTTTACCAGATCAAGGCTTCAAAGCCCTCCTCTACTTCAGATCAATCTTCCCATTTTGCCCCTCCTCCCAGTAACATTAACACCCCAGTGCAAAATCCGATTGCCCCGATCCCTGGCAACAAGAAGAAGGCCGGCACTTCCCGGCAGAGCACCCTCGACAAGTTTATCGGCAGGCCTCCACCAGAGATTCGAGATGTCGAAGAACGAAACCTGGATTGTAGTGAGGGTGATGGGAGGGTGTCCTGTGTTCCAATTGATGCTGAGGCAGCTAAAACTTGGATATACCCAGGAAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTTGTGCAACAAATACAAGCGTGTCATAATATTGTAGGAATACCACAGGAATGGACAATTGATATGACAGGTCAGACAAGTCCTACGAAAAGAGCTTGCTTGTGGAAAACTAAACGAGTTTTTTTTGTAACTCCACAAGTGCTGGAGAAGGACATTCAGTCTGGCACATGTGCAGTAGAATACTTGGTATGTTTGGTGATTGATGAAGCTCACCGAGCATTAGGAAACTATTCTTACAGTGTTGCAGTTCGTGAGACTGTCCAGCAAGTTATTGATAACTTATATATATCAACACTTCAATATCGCAATGAAGACGACCCTGATGTCAAACCATATGTCCACAACAGGGAGGTAGAGTTGATTCAGGTTGCAATGGGTCAAGCTGCTGTTGAGATAGACAATAAGCTCTTGGAAGCAATGCATCCGTTTGCATCCAGGCTTTGTGCCATTGGAGTTCTCCCAACTCGAGACATTCAGAATGTATGCCCTTGTCTATTACTTAATTCAAGAGAGAAATTTCGTCAAGCACCTCCAGACCTCCCCCAAATTAAGCCTGGAGACATTGAAGGTTTCTTTGGAGCACTGCTTACACTTTACCACATTCGTAAACTAATATCAAGCCACGGAATAAGGCCTGCATATGAAATGCTTGAAGAAAAATTAAAACAAGGGTATGGCTTTTCTATACTCTCAGTTTCCTCACTGTCTTTATTAGCTCATACTCGGATTCTAATAACTATTTCCTATTATATGTGGAACCATTATGCATTTTATTGTTTACTTTTCTCGAGTCAAATATTCTTTAATCTATGTAGGAACCTTCCCAATTCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

416

Amino Acids

46.64

Weight (kDa)

5.96

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	734
AciI	CCGC	2 cut(s)	65, 68
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	926
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	100, 200, 757
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	5 cut(s)	108, 710, 918, 977, 1064
AhdI	GACNNNNNGTC	1 cut(s)	568
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	5 cut(s)	199, 297, 373, 845, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	969, 1001
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	6 cut(s)	356, 506, 620, 794, 817, 1127
AluI	AGCT	6 cut(s)	356, 506, 620, 794, 817, 1127
Alw21I	GWGCWC	2 cut(s)	239, 994
Alw26I	GTCTC	3 cut(s)	659, 873, 963
AlwI	GGATC	1 cut(s)	190
Ama87I	CYCGRG	2 cut(s)	876, 1198
AoxI	GGCC	3 cut(s)	216, 260, 1043
ApeKI	GCWGC	3 cut(s)	353, 392, 794
ApoI	RAATTY	1 cut(s)	926
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 732, 764
Asp700I	GAANNNNTTC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	4 cut(s)	11, 326, 614, 619
AvaI	CYCGRG	2 cut(s)	876, 1198
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	2 cut(s)	239, 994
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	365, 379, 781
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	5 cut(s)	201, 299, 375, 847, 966
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	659, 873, 963
BisI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
BlsI	GCNGC	5 cut(s)	67, 70, 355, 394, 796
Bme1390I	CCNGG	6 cut(s)	201, 229, 299, 375, 847, 966
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmeT110I	CYCGRG	2 cut(s)	876, 1198
BmgBI	CACGTC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	1169, 1229
BmrFI	CCNGG	6 cut(s)	201, 229, 299, 375, 847, 966
BmrI	ACTGGG	2 cut(s)	150, 167
BmsI	GCATC	3 cut(s)	334, 841, 851
BmuI	ACTGGG	2 cut(s)	150, 167
BpiI	GAAGAC	1 cut(s)	729
BpmI	CTGGAG	3 cut(s)	575, 927, 987
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	229
BsaJI	CCNNGG	3 cut(s)	199, 373, 1033
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 200, 757
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	156, 173
Bse3DI	GCAATG	3 cut(s)	724, 789, 834
BseBI	CCWGG	5 cut(s)	201, 299, 375, 847, 966
BseDI	CCNNGG	3 cut(s)	199, 373, 1033
BseGI	GGATG	2 cut(s)	832, 842
BseLI	CCNNNNNNNGG	3 cut(s)	100, 200, 757
BseMI	GCAATG	3 cut(s)	724, 789, 834
BseMII	CTCAG	2 cut(s)	339, 1116
BseNI	ACTGG	2 cut(s)	156, 173
BseRI	GAGGAG	2 cut(s)	106, 141
BseXI	GCAGC	3 cut(s)	365, 379, 781
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	218, 262, 1045
BsiHKAI	GWGCWC	2 cut(s)	239, 994
BsiHKCI	CYCGRG	2 cut(s)	876, 1198
BsiSI	CCGG	2 cut(s)	219, 229
BslI	CCNNNNNNNGG	3 cut(s)	100, 200, 757
BsmAI	GTCTC	3 cut(s)	659, 873, 963
BsnI	GGCC	3 cut(s)	218, 262, 1045
BsoBI	CYCGRG	2 cut(s)	876, 1198
Bsp1286I	GDGCHC	2 cut(s)	239, 994
Bsp143I	GATC	3 cut(s)	96, 127, 195
BspACI	CCGC	2 cut(s)	65, 68
BspANI	GGCC	3 cut(s)	218, 262, 1045
BspCNI	CTCAG	2 cut(s)	340, 1115
BspLI	GGNNCC	2 cut(s)	1169, 1229
BspPI	GGATC	1 cut(s)	190
BsrDI	GCAATG	3 cut(s)	724, 789, 834
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	156, 173
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	199, 373, 1033
BssMI	GATC	3 cut(s)	96, 127, 195
Bst2UI	CCWGG	5 cut(s)	201, 299, 375, 847, 966
Bst4CI	ACNGT	3 cut(s)	650, 670, 1116
BstC8I	GCNNGC	4 cut(s)	220, 260, 508, 1047
BstDEI	CTNAG	2 cut(s)	348, 1102
BstDSI	CCRYGG	1 cut(s)	1033
BstF5I	GGATG	2 cut(s)	832, 842
BstKTI	GATC	3 cut(s)	99, 130, 198
BstMAI	GTCTC	3 cut(s)	659, 873, 963
BstMBI	GATC	3 cut(s)	96, 127, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 626
BstNI	CCWGG	5 cut(s)	201, 299, 375, 847, 966
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	6 cut(s)	199, 227, 297, 373, 845, 964
BstV1I	GCAGC	3 cut(s)	365, 379, 781
BstV2I	GAAGAC	1 cut(s)	729
BstXI	CCANNNNNNTGG	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	218, 262, 1045
BtgI	CCRYGG	1 cut(s)	1033
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	832, 842
BtsI	GCAGTG	1 cut(s)	992
BtsIMutI	CAGTG	4 cut(s)	180, 655, 992, 1112
Cac8I	GCNNGC	4 cut(s)	220, 260, 508, 1047
Cfr10I	RCCGGY	1 cut(s)	218
CviAII	CATG	2 cut(s)	23, 579
DdeI	CTNAG	2 cut(s)	348, 1102
DpnI	GATC	3 cut(s)	98, 129, 197
DpnII	GATC	3 cut(s)	96, 127, 195
DrdI	GACNNNNNNGTC	1 cut(s)	734
DriI	GACNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1105I	GACNNNNNGTC	1 cut(s)	568
Eco147I	AGGCCT	2 cut(s)	262, 1045
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	2 cut(s)	876, 1198
EcoRII	CCWGG	5 cut(s)	199, 297, 373, 845, 964
EcoT22I	ATGCAT	2 cut(s)	834, 1180
FaeI	CATG	2 cut(s)	26, 582
FatI	CATG	2 cut(s)	22, 578
FauNDI	CATATG	2 cut(s)	745, 1051
Fnu4HI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
FokI	GGATG	2 cut(s)	819, 829
Fsp4HI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
GluI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
GsuI	CTGGAG	3 cut(s)	575, 927, 987
HaeIII	GGCC	3 cut(s)	218, 262, 1045
HapII	CCGG	2 cut(s)	219, 229
Hin1II	CATG	2 cut(s)	26, 582
HinfI	GANTC	4 cut(s)	274, 772, 1138, 1201
HpaII	CCGG	2 cut(s)	219, 229
HphI	GGTGA	4 cut(s)	11, 326, 614, 619
Hpy166II	GTNNAC	4 cut(s)	91, 751, 1019, 1190
Hpy188I	TCNGA	5 cut(s)	127, 186, 486, 888, 1137
Hpy188III	TCNNGA	7 cut(s)	278, 402, 662, 878, 918, 944, 1198
Hpy8I	GTNNAC	4 cut(s)	91, 751, 1019, 1190
Hpy99I	CGWCG	6 cut(s)	35, 38, 41, 44, 47, 86
HpyAV	CCTTC	5 cut(s)	208, 408, 553, 971, 1241
HpyCH4III	ACNGT	3 cut(s)	650, 670, 1116
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	9 cut(s)	178, 418, 584, 656, 782, 832, 842, 1049, 1178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 626
HpyF3I	CTNAG	2 cut(s)	348, 1102
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	26, 582
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	96, 127, 195
LmnI	GCTCC	2 cut(s)	400, 989
Lsp1109I	GCAGC	3 cut(s)	365, 379, 781
LweI	GCATC	3 cut(s)	334, 841, 851
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	158, 538
MalI	GATC	3 cut(s)	98, 129, 197
MboI	GATC	3 cut(s)	96, 127, 195
MboII	GAAGA	5 cut(s)	126, 223, 299, 734, 1076
MfeI	CAATTG	2 cut(s)	339, 468
MhlI	GDGCHC	2 cut(s)	239, 994
MluCI	AATT	8 cut(s)	49, 339, 468, 913, 926, 957, 1070, 1237
MlyI	GAGTC	1 cut(s)	1210
Mph1103I	ATGCAT	2 cut(s)	834, 1180
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	640
MseI	TTAA	5 cut(s)	165, 912, 960, 1073, 1215
MslI	CAYNNNNRTG	2 cut(s)	173, 460
MspI	CCGG	2 cut(s)	219, 229
MspR9I	CCNGG	6 cut(s)	201, 229, 299, 375, 847, 966
MunI	CAATTG	2 cut(s)	339, 468
MvaI	CCWGG	5 cut(s)	201, 299, 375, 847, 966
MwoI	GCNNNNNNNGC	2 cut(s)	353, 626
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	229
NdeI	CATATG	2 cut(s)	745, 1051
NdeII	GATC	3 cut(s)	96, 127, 195
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	26, 582
NlaIV	GGNNCC	2 cut(s)	1169, 1229
NsiI	ATGCAT	2 cut(s)	834, 1180
NspI	RCATGY	1 cut(s)	582
OliI	CACNNNNGTG	1 cut(s)	173
PaeR7I	CTCGAG	2 cut(s)	876, 1198
PceI	AGGCCT	2 cut(s)	262, 1045
PciI	ACATGT	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 39, 42
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	640
PfeI	GAWTC	3 cut(s)	274, 772, 1138
PkrI	GCNGC	5 cut(s)	67, 70, 355, 394, 796
PleI	GAGTC	1 cut(s)	1209
PpsI	GAGTC	1 cut(s)	1209
PscI	ACATGT	1 cut(s)	578
Psp6I	CCWGG	5 cut(s)	199, 297, 373, 845, 964
PspGI	CCWGG	5 cut(s)	199, 297, 373, 845, 964
PspN4I	GGNNCC	2 cut(s)	1169, 1229
RseI	CAYNNNNRTG	2 cut(s)	173, 460
SaqAI	TTAA	5 cut(s)	165, 912, 960, 1073, 1215
SatI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
Sau3AI	GATC	3 cut(s)	96, 127, 195
SchI	GAGTC	1 cut(s)	1210
ScrFI	CCNGG	6 cut(s)	201, 229, 299, 375, 847, 966
SduI	GDGCHC	2 cut(s)	239, 994
SfaNI	GCATC	3 cut(s)	334, 841, 851
Sfr274I	CTCGAG	2 cut(s)	876, 1198
SlaI	CTCGAG	2 cut(s)	876, 1198
SmiMI	CAYNNNNRTG	2 cut(s)	173, 460
SmlI	CTYRAG	2 cut(s)	876, 1198
SmoI	CTYRAG	2 cut(s)	876, 1198
Sse9I	AATT	8 cut(s)	49, 339, 468, 913, 926, 957, 1070, 1237
SseBI	AGGCCT	2 cut(s)	262, 1045
SsiI	CCGC	2 cut(s)	65, 68
SspI	AATATT	2 cut(s)	442, 1209
StuI	AGGCCT	2 cut(s)	262, 1045
StyD4I	CCNGG	6 cut(s)	199, 227, 297, 373, 845, 964
TaaI	ACNGT	3 cut(s)	650, 670, 1116
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	8 cut(s)	30, 81, 243, 277, 285, 403, 877, 1199
TasI	AATT	8 cut(s)	49, 339, 468, 913, 926, 957, 1070, 1237
TauI	GCSGC	2 cut(s)	68, 71
TfiI	GAWTC	3 cut(s)	274, 772, 1138
Tru1I	TTAA	5 cut(s)	165, 912, 960, 1073, 1215
Tru9I	TTAA	5 cut(s)	165, 912, 960, 1073, 1215
TscAI	CASTG	4 cut(s)	180, 655, 999, 1119
TseI	GCWGC	3 cut(s)	353, 392, 794
TspDTI	ATGAA	3 cut(s)	630, 735, 1068
TspGWI	ACGGA	2 cut(s)	825, 1050
TspRI	CASTG	4 cut(s)	180, 655, 999, 1119
XapI	RAATTY	1 cut(s)	926
XceI	RCATGY	1 cut(s)	582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	962
XhoI	CTCGAG	2 cut(s)	876, 1198
XmnI	GAANNNNTTC	1 cut(s)	640
Zsp2I	ATGCAT	2 cut(s)	834, 1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.