Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004517.1

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 227

Gene Structure 227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004517.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 227 bp

tgcaatcagaggctgcaggcagaaatatgcagcacagtgatgcacatggggacatgctttatgatgatcagttttatgaggatcttgatcttgacgcattggaagcacaagctacaattcttcttaagcagaaatcagaattgccactgcagaagccacagatgtgtcagttaaacccagaaaatcctactcttgacagtgctccatcatttgatcttgggatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

74

Amino Acids

8.26

Weight (kDa)

4.09

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	89
AflII	CTTAAG	1 cut(s)	124
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	13, 30
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	213
BclI	TGATCA	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	14, 148
BfrI	CTTAAG	1 cut(s)	124
BisI	GCNGC	2 cut(s)	14, 31
BlsI	GCNGC	2 cut(s)	15, 32
BmsI	GCATC	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	66, 81, 87, 213
BspMAI	CTGCAG	2 cut(s)	18, 152
BspPI	GGATC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	124
BssMI	GATC	4 cut(s)	66, 81, 87, 213
Bst4CI	ACNGT	2 cut(s)	37, 199
BstAFI	CTTAAG	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	69, 84, 90, 216
BstMBI	GATC	4 cut(s)	66, 81, 87, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	57
BstSFI	CTRYAG	2 cut(s)	14, 148
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	3 cut(s)	42, 145, 204
Cac8I	GCNNGC	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	13
CseI	GACGC	1 cut(s)	103
CviAII	CATG	2 cut(s)	46, 54
CviJI	RGCY	3 cut(s)	13, 112, 156
CviKI_1	RGCY	3 cut(s)	13, 112, 156
DpnI	GATC	4 cut(s)	68, 83, 89, 215
DpnII	GATC	4 cut(s)	66, 81, 87, 213
FaeI	CATG	2 cut(s)	49, 57
FaiI	YATR	6 cut(s)	28, 47, 55, 62, 77, 225
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	45, 53
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	14, 31
Fsp4HI	GCNGC	2 cut(s)	14, 31
GluI	GCNGC	2 cut(s)	14, 31
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	49, 57
Hpy188I	TCNGA	2 cut(s)	9, 138
Hpy188III	TCNNGA	3 cut(s)	85, 91, 193
HpyCH4III	ACNGT	2 cut(s)	37, 199
HpyCH4V	TGCA	5 cut(s)	3, 16, 30, 43, 150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	49, 57
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	66, 81, 87, 213
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	2 cut(s)	2, 191
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	30
MalI	GATC	4 cut(s)	68, 83, 89, 215
MboI	GATC	4 cut(s)	66, 81, 87, 213
MboII	GAAGA	1 cut(s)	112
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	116, 139
MnlI	CCTC	2 cut(s)	3, 72
MseI	TTAA	2 cut(s)	125, 172
MslI	CAYNNNNRTG	2 cut(s)	38, 162
MspCI	CTTAAG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	4 cut(s)	66, 81, 87, 213
NlaIII	CATG	2 cut(s)	49, 57
NspI	RCATGY	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	15, 32
PstI	CTGCAG	2 cut(s)	18, 152
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	81
RseI	CAYNNNNRTG	2 cut(s)	38, 162
SaqAI	TTAA	2 cut(s)	125, 172
SatI	GCNGC	2 cut(s)	14, 31
Sau3AI	GATC	4 cut(s)	66, 81, 87, 213
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	2 cut(s)	14, 148
SgeI	CNNG	8 cut(s)	29, 58, 66, 97, 103, 121, 190, 205
SmiMI	CAYNNNNRTG	2 cut(s)	38, 162
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	116, 139
TaaI	ACNGT	2 cut(s)	37, 199
TasI	AATT	2 cut(s)	116, 139
Tru1I	TTAA	2 cut(s)	125, 172
Tru9I	TTAA	2 cut(s)	125, 172
TscAI	CASTG	3 cut(s)	42, 152, 204
TseI	GCWGC	2 cut(s)	13, 30
TspRI	CASTG	3 cut(s)	42, 152, 204
Vha464I	CTTAAG	1 cut(s)	124
XceI	RCATGY	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.