DEAD DEAH box RNA helicase family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020 |
| fragaria_vesca | FvH4_7g03750 |
| malus_domestica | MD15G1404400.v1.1 |
| prunus_persica | Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1 |
| pyrus_communis | pycom15g36170 pycom15g36180 |
| rosa_chinensis | RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951 |
| rosa_laevigata | RLG00000001539 RLG00000002150 RLG00000022432 |
| rosa_multiflora | Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00230830 Rroxscaffold_3G00238230 |
| rosa_rugosa | Rorug07G0252600 Rorug07G0254200 |
| rosa_samantha | Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900 |
| rosa_wichuraiana | Rw7G033620 Rw7G033650 Rw7G033670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2804 |
| Acc16I | TGCGCA | 1 cut(s) | 3245 |
| AccB1I | GGYRCC | 1 cut(s) | 2770 |
| AccBSI | CCGCTC | 1 cut(s) | 14 |
| AccI | GTMKAC | 1 cut(s) | 3570 |
| AccII | CGCG | 2 cut(s) | 203, 861 |
| AciI | CCGC | 9 cut(s) | 12, 99, 210, 260, 752, 786, 859, 1100, 2364 |
| AclWI | GGATC | 5 cut(s) | 805, 1364, 1831, 2351, 3264 |
| AcoI | YGGCCR | 1 cut(s) | 244 |
| AcsI | RAATTY | 8 cut(s) | 1070, 1544, 2464, 2965, 3057, 3407, 3856, 3902 |
| AcuI | CTGAAG | 8 cut(s) | 421, 1390, 1878, 2520, 3420, 3692, 3804, 3945 |
| AcyI | GRCGYC | 2 cut(s) | 279, 2747 |
| AdeI | CACNNNGTG | 1 cut(s) | 3212 |
| AfaI | GTAC | 7 cut(s) | 1078, 1344, 2283, 3340, 3520, 3730, 3799 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 102, 297, 396, 3606, 3674 |
| AflII | CTTAAG | 2 cut(s) | 1163, 4034 |
| AflIII | ACRYGT | 2 cut(s) | 1058, 1867 |
| AgeI | ACCGGT | 1 cut(s) | 3118 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 174, 646 |
| AhlI | ACTAGT | 1 cut(s) | 1973 |
| AjiI | CACGTC | 1 cut(s) | 3964 |
| AjnI | CCWGG | 9 cut(s) | 246, 793, 989, 1042, 1900, 2446, 2654, 2977, 3814 |
| Alw21I | GWGCWC | 3 cut(s) | 1012, 1312, 4117 |
| Alw26I | GTCTC | 7 cut(s) | 224, 248, 1305, 2657, 2738, 3039, 3192 |
| AlwI | GGATC | 5 cut(s) | 805, 1364, 1831, 2351, 3264 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3168, 3923 |
| Ama87I | CYCGRG | 3 cut(s) | 234, 395, 1381 |
| AoxI | GGCC | 7 cut(s) | 104, 244, 1190, 1422, 1507, 3133, 3991 |
| ApaI | GGGCCC | 1 cut(s) | 108 |
| ApoI | RAATTY | 8 cut(s) | 1070, 1544, 2464, 2965, 3057, 3407, 3856, 3902 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 38, 70, 320, 352, 1845, 1877 |
| AseI | ATTAAT | 1 cut(s) | 746 |
| AsiGI | ACCGGT | 1 cut(s) | 3118 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1263, 2155, 2718 |
| AspLEI | GCGC | 1 cut(s) | 3246 |
| AspS9I | GGNCC | 8 cut(s) | 104, 105, 1422, 2419, 3134, 3663, 3746, 3991 |
| AsuC2I | CCSGG | 3 cut(s) | 103, 321, 3668 |
| AsuII | TTCGAA | 1 cut(s) | 2089 |
| AvaI | CYCGRG | 3 cut(s) | 234, 395, 1381 |
| AvaII | GGWCC | 3 cut(s) | 2419, 3663, 3746 |
| AxyI | CCTNAGG | 1 cut(s) | 450 |
| BaeGI | GKGCMC | 1 cut(s) | 108 |
| BanI | GGYRCC | 1 cut(s) | 2770 |
| BanII | GRGCYC | 3 cut(s) | 108, 1012, 1043 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 419, 451 |
| BbsI | GAAGAC | 2 cut(s) | 73, 407 |
| Bbv12I | GWGCWC | 3 cut(s) | 1012, 1312, 4117 |
| BbvCI | CCTCAGC | 2 cut(s) | 222, 3426 |
| BccI | CCATC | 7 cut(s) | 435, 1691, 2029, 2653, 2807, 3556, 4126 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 345, 379, 2069, 2103 |
| BciT130I | CCWGG | 9 cut(s) | 248, 795, 991, 1044, 1902, 2448, 2656, 2979, 3816 |
| BciVI | GTATCC | 3 cut(s) | 1553, 2890, 3001 |
| BclI | TGATCA | 2 cut(s) | 1351, 3976 |
| BcnI | CCSGG | 3 cut(s) | 103, 321, 3668 |
| BcoDI | GTCTC | 7 cut(s) | 224, 248, 1305, 2657, 2738, 3039, 3192 |
| BcuI | ACTAGT | 1 cut(s) | 1973 |
| BfaI | CTAG | 7 cut(s) | 1824, 1974, 2585, 2634, 3146, 3377, 3899 |
| BfmI | CTRYAG | 4 cut(s) | 414, 1467, 1947, 3169 |
| BfrI | CTTAAG | 2 cut(s) | 1163, 4034 |
| BfuI | GTATCC | 3 cut(s) | 1553, 2890, 3001 |
| BglII | AGATCT | 3 cut(s) | 2581, 3323, 3872 |
| BlpI | GCTNAGC | 1 cut(s) | 3622 |
| BmcAI | AGTACT | 1 cut(s) | 3340 |
| Bme18I | GGWCC | 3 cut(s) | 2419, 3663, 3746 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 174, 646 |
| BmeT110I | CYCGRG | 3 cut(s) | 234, 395, 1381 |
| BmgBI | CACGTC | 1 cut(s) | 3964 |
| BmgT120I | GGNCC | 8 cut(s) | 104, 105, 1422, 2419, 3134, 3663, 3746, 3991 |
| BmiI | GGNNCC | 7 cut(s) | 106, 446, 1040, 2772, 2919, 3367, 3665 |
| BmrI | ACTGGG | 2 cut(s) | 302, 2316 |
| BmsI | GCATC | 9 cut(s) | 928, 958, 1015, 1275, 1423, 1627, 2103, 2395, 3364 |
| BmuI | ACTGGG | 2 cut(s) | 302, 2316 |
| BpiI | GAAGAC | 2 cut(s) | 73, 407 |
| BpmI | CTGGAG | 8 cut(s) | 653, 672, 1026, 1074, 2583, 2598, 3216, 3798 |
| Bpu10I | CCTNAGC | 3 cut(s) | 222, 1280, 3426 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3622 |
| Bpu14I | TTCGAA | 1 cut(s) | 2089 |
| BpuEI | CTTGAG | 1 cut(s) | 2044 |
| BpuMI | CCSGG | 3 cut(s) | 103, 321, 3668 |
| Bsa29I | ATCGAT | 1 cut(s) | 549 |
| BsaAI | YACGTR | 1 cut(s) | 1059 |
| BsaHI | GRCGYC | 2 cut(s) | 279, 2747 |
| BsaJI | CCNNGG | 9 cut(s) | 320, 1042, 1829, 2322, 2627, 2828, 2978, 3600, 3666 |
| BsaWI | WCCGGW | 4 cut(s) | 389, 1682, 2284, 3118 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 896, 926, 1069, 1099 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 102, 297, 396, 3606, 3674 |
| Bse118I | RCCGGY | 1 cut(s) | 3118 |
| Bse21I | CCTNAGG | 1 cut(s) | 450 |
| Bse3DI | GCAATG | 3 cut(s) | 380, 2777, 3581 |
| BseBI | CCWGG | 9 cut(s) | 248, 795, 991, 1044, 1902, 2448, 2656, 2979, 3816 |
| BseCI | ATCGAT | 1 cut(s) | 549 |
| BseDI | CCNNGG | 9 cut(s) | 320, 1042, 1829, 2322, 2627, 2828, 2978, 3600, 3666 |
| BseGI | GGATG | 9 cut(s) | 256, 1290, 1438, 1665, 1839, 2176, 2664, 2686, 3865 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 102, 297, 396, 3606, 3674 |
| BseMI | GCAATG | 3 cut(s) | 380, 2777, 3581 |
| BseRI | GAGGAG | 4 cut(s) | 6, 120, 1077, 3705 |
| BseSI | GKGCMC | 1 cut(s) | 108 |
| BsgI | GTGCAG | 1 cut(s) | 4079 |
| Bsh1236I | CGCG | 2 cut(s) | 203, 861 |
| BshFI | GGCC | 7 cut(s) | 106, 246, 1192, 1424, 1509, 3135, 3993 |
| BshNI | GGYRCC | 1 cut(s) | 2770 |
| BshTI | ACCGGT | 1 cut(s) | 3118 |
| BshVI | ATCGAT | 1 cut(s) | 549 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1012, 1312, 4117 |
| BsiHKCI | CYCGRG | 3 cut(s) | 234, 395, 1381 |
| BsiSI | CCGG | 9 cut(s) | 102, 227, 243, 320, 390, 1683, 2285, 3119, 3668 |
| BslFI | GGGAC | 5 cut(s) | 1302, 2323, 2420, 2996, 3287 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 102, 297, 396, 3606, 3674 |
| BsmAI | GTCTC | 7 cut(s) | 224, 248, 1305, 2657, 2738, 3039, 3192 |
| BsmBI | CGTCTC | 2 cut(s) | 2738, 3039 |
| BsmFI | GGGAC | 5 cut(s) | 1302, 2323, 2420, 2996, 3287 |
| BsmI | GAATGC | 1 cut(s) | 674 |
| BsnI | GGCC | 7 cut(s) | 106, 246, 1192, 1424, 1509, 3135, 3993 |
| BsoBI | CYCGRG | 3 cut(s) | 234, 395, 1381 |
| Bsp119I | TTCGAA | 1 cut(s) | 2089 |
| Bsp120I | GGGCCC | 1 cut(s) | 104 |
| Bsp1286I | GDGCHC | 5 cut(s) | 108, 1012, 1043, 1312, 4117 |
| Bsp1407I | TGTACA | 2 cut(s) | 3518, 3728 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3622 |
| Bsp19I | CCATGG | 1 cut(s) | 3600 |
| Bsp68I | TCGCGA | 1 cut(s) | 203 |
| BspACI | CCGC | 9 cut(s) | 12, 99, 210, 260, 752, 786, 859, 1100, 2364 |
| BspANI | GGCC | 7 cut(s) | 106, 246, 1192, 1424, 1509, 3135, 3993 |
| BspDI | ATCGAT | 1 cut(s) | 549 |
| BspFNI | CGCG | 2 cut(s) | 203, 861 |
| BspHI | TCATGA | 1 cut(s) | 1389 |
| BspLI | GGNNCC | 7 cut(s) | 106, 446, 1040, 2772, 2919, 3367, 3665 |
| BspMAI | CTGCAG | 1 cut(s) | 418 |
| BspPI | GGATC | 5 cut(s) | 805, 1364, 1831, 2351, 3264 |
| BspT104I | TTCGAA | 1 cut(s) | 2089 |
| BspT107I | GGYRCC | 1 cut(s) | 2770 |
| BspTI | CTTAAG | 2 cut(s) | 1163, 4034 |
| BsrBI | CCGCTC | 1 cut(s) | 14 |
| BsrDI | GCAATG | 3 cut(s) | 380, 2777, 3581 |
| BsrFI | RCCGGY | 1 cut(s) | 3118 |
| BsrGI | TGTACA | 2 cut(s) | 3518, 3728 |
| BssAI | RCCGGY | 1 cut(s) | 3118 |
| BssECI | CCNNGG | 9 cut(s) | 320, 1042, 1829, 2322, 2627, 2828, 2978, 3600, 3666 |
| BssNAI | GTATAC | 1 cut(s) | 3571 |
| BssNI | GRCGYC | 2 cut(s) | 279, 2747 |
| BssT1I | CCWWGG | 4 cut(s) | 1829, 2322, 2627, 3600 |
| Bst1107I | GTATAC | 1 cut(s) | 3571 |
| Bst2UI | CCWGG | 9 cut(s) | 248, 795, 991, 1044, 1902, 2448, 2656, 2979, 3816 |
| Bst4CI | ACNGT | 9 cut(s) | 53, 150, 814, 1963, 2775, 3164, 3728, 3947, 4112 |
| Bst6I | CTCTTC | 6 cut(s) | 24, 365, 1725, 2679, 2787, 3042 |
| BstACI | GRCGYC | 2 cut(s) | 279, 2747 |
| BstAFI | CTTAAG | 2 cut(s) | 1163, 4034 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2122 |
| BstAUI | TGTACA | 2 cut(s) | 3518, 3728 |
| BstBAI | YACGTR | 1 cut(s) | 1059 |
| BstBI | TTCGAA | 1 cut(s) | 2089 |
| BstC8I | GCNNGC | 9 cut(s) | 210, 511, 586, 658, 1194, 2784, 2937, 3226, 3915 |
| BstDSI | CCRYGG | 1 cut(s) | 3600 |
| BstEII | GGTNACC | 1 cut(s) | 1151 |
| BstF5I | GGATG | 9 cut(s) | 256, 1290, 1438, 1665, 1839, 2176, 2664, 2686, 3865 |
| BstFNI | CGCG | 2 cut(s) | 203, 861 |
| BstHHI | GCGC | 1 cut(s) | 3246 |
| BstMAI | GTCTC | 7 cut(s) | 224, 248, 1305, 2657, 2738, 3039, 3192 |
| BstNI | CCWGG | 9 cut(s) | 248, 795, 991, 1044, 1902, 2448, 2656, 2979, 3816 |
| BstNSI | RCATGY | 7 cut(s) | 513, 588, 660, 1789, 1871, 2393, 3021 |
| BstPI | GGTNACC | 1 cut(s) | 1151 |
| BstSFI | CTRYAG | 4 cut(s) | 414, 1467, 1947, 3169 |
| BstSLI | GKGCMC | 1 cut(s) | 108 |
| BstUI | CGCG | 2 cut(s) | 203, 861 |
| BstV2I | GAAGAC | 2 cut(s) | 73, 407 |
| BstX2I | RGATCY | 5 cut(s) | 797, 1369, 2581, 3323, 3872 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 540, 3004, 3646 |
| BstYI | RGATCY | 5 cut(s) | 797, 1369, 2581, 3323, 3872 |
| BstZ17I | GTATAC | 1 cut(s) | 3571 |
| Bsu15I | ATCGAT | 1 cut(s) | 549 |
| Bsu36I | CCTNAGG | 1 cut(s) | 450 |
| BsuI | GTATCC | 3 cut(s) | 1553, 2890, 3001 |
| BsuRI | GGCC | 7 cut(s) | 106, 246, 1192, 1424, 1509, 3135, 3993 |
| BsuTUI | ATCGAT | 1 cut(s) | 549 |
| BtgI | CCRYGG | 1 cut(s) | 3600 |
| BtgZI | GCGATG | 2 cut(s) | 184, 876 |
| BtrI | CACGTC | 1 cut(s) | 3964 |
| BtsCI | GGATG | 9 cut(s) | 256, 1290, 1438, 1665, 1839, 2176, 2664, 2686, 3865 |
| BtsIMutI | CAGTG | 9 cut(s) | 82, 733, 2149, 2997, 3045, 3266, 3553, 4062, 4117 |
| BtuMI | TCGCGA | 1 cut(s) | 203 |
| Cac8I | GCNNGC | 9 cut(s) | 210, 511, 586, 658, 1194, 2784, 2937, 3226, 3915 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3168, 3923 |
| CciI | TCATGA | 1 cut(s) | 1389 |
| CfoI | GCGC | 1 cut(s) | 3246 |
| Cfr10I | RCCGGY | 1 cut(s) | 3118 |
| Cfr13I | GGNCC | 8 cut(s) | 104, 105, 1422, 2419, 3134, 3663, 3746, 3991 |
| ClaI | ATCGAT | 1 cut(s) | 549 |
| CseI | GACGC | 5 cut(s) | 287, 412, 2755, 2933, 4013 |
| Csp6I | GTAC | 7 cut(s) | 1077, 1343, 2282, 3339, 3519, 3729, 3798 |
| CspAI | ACCGGT | 1 cut(s) | 3118 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1567, 1602, 3755, 3790 |
| CviQI | GTAC | 7 cut(s) | 1077, 1343, 2282, 3339, 3519, 3729, 3798 |
| DraI | TTTAAA | 1 cut(s) | 1108 |
| DraIII | CACNNNGTG | 1 cut(s) | 3212 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2804 |
| DriI | GACNNNNNGTC | 2 cut(s) | 174, 646 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2804 |
| EaeI | YGGCCR | 1 cut(s) | 244 |
| Eam1104I | CTCTTC | 6 cut(s) | 24, 365, 1725, 2679, 2787, 3042 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 174, 646 |
| EarI | CTCTTC | 6 cut(s) | 24, 365, 1725, 2679, 2787, 3042 |
| Ecl136II | GAGCTC | 1 cut(s) | 1010 |
| Eco130I | CCWWGG | 4 cut(s) | 1829, 2322, 2627, 3600 |
| Eco24I | GRGCYC | 3 cut(s) | 108, 1012, 1043 |
| Eco32I | GATATC | 1 cut(s) | 1606 |
| Eco47I | GGWCC | 3 cut(s) | 2419, 3663, 3746 |
| Eco53kI | GAGCTC | 1 cut(s) | 1010 |
| Eco57I | CTGAAG | 8 cut(s) | 421, 1390, 1878, 2520, 3420, 3692, 3804, 3945 |
| Eco81I | CCTNAGG | 1 cut(s) | 450 |
| Eco88I | CYCGRG | 3 cut(s) | 234, 395, 1381 |
| Eco91I | GGTNACC | 1 cut(s) | 1151 |
| EcoICRI | GAGCTC | 1 cut(s) | 1010 |
| EcoO109I | RGGNCCY | 4 cut(s) | 105, 2419, 3663, 3991 |
| EcoO65I | GGTNACC | 1 cut(s) | 1151 |
| EcoRI | GAATTC | 3 cut(s) | 2965, 3407, 3902 |
| EcoRII | CCWGG | 9 cut(s) | 246, 793, 989, 1042, 1900, 2446, 2654, 2977, 3814 |
| EcoRV | GATATC | 1 cut(s) | 1606 |
| EcoT14I | CCWWGG | 4 cut(s) | 1829, 2322, 2627, 3600 |
| EcoT22I | ATGCAT | 1 cut(s) | 3019 |
| EcoT38I | GRGCYC | 3 cut(s) | 108, 1012, 1043 |
| ErhI | CCWWGG | 4 cut(s) | 1829, 2322, 2627, 3600 |
| Esp3I | CGTCTC | 2 cut(s) | 2738, 3039 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 449, 481, 1605, 1637 |
| FaqI | GGGAC | 5 cut(s) | 1302, 2323, 2420, 2996, 3287 |
| FauI | CCCGC | 1 cut(s) | 217 |
| FbaI | TGATCA | 2 cut(s) | 1351, 3976 |
| FblI | GTMKAC | 1 cut(s) | 3570 |
| FokI | GGATG | 9 cut(s) | 263, 1297, 1445, 1672, 1846, 2183, 2671, 2693, 3852 |
| FriOI | GRGCYC | 3 cut(s) | 108, 1012, 1043 |
| FspBI | CTAG | 7 cut(s) | 1824, 1974, 2585, 2634, 3146, 3377, 3899 |
| FspI | TGCGCA | 1 cut(s) | 3245 |
| GlaI | GCGC | 1 cut(s) | 3245 |
| GsuI | CTGGAG | 8 cut(s) | 653, 672, 1026, 1074, 2583, 2598, 3216, 3798 |
| HaeIII | GGCC | 7 cut(s) | 106, 246, 1192, 1424, 1509, 3135, 3993 |
| HapII | CCGG | 9 cut(s) | 102, 227, 243, 320, 390, 1683, 2285, 3119, 3668 |
| HgaI | GACGC | 5 cut(s) | 287, 412, 2755, 2933, 4013 |
| HhaI | GCGC | 1 cut(s) | 3246 |
| Hin1I | GRCGYC | 2 cut(s) | 279, 2747 |
| Hin6I | GCGC | 1 cut(s) | 3244 |
| HinP1I | GCGC | 1 cut(s) | 3244 |
| HincII | GTYRAC | 2 cut(s) | 2203, 3889 |
| HindII | GTYRAC | 2 cut(s) | 2203, 3889 |
| HpaII | CCGG | 9 cut(s) | 102, 227, 243, 320, 390, 1683, 2285, 3119, 3668 |
| Hpy166II | GTNNAC | 5 cut(s) | 895, 2203, 2475, 3571, 3889 |
| Hpy8I | GTNNAC | 5 cut(s) | 895, 2203, 2475, 3571, 3889 |
| Hpy99I | CGWCG | 7 cut(s) | 35, 38, 41, 44, 47, 50, 53 |
| HpyAV | CCTTC | 8 cut(s) | 486, 631, 1118, 1589, 1680, 1718, 2170, 3772 |
| HpyCH4III | ACNGT | 9 cut(s) | 53, 150, 814, 1963, 2775, 3164, 3728, 3947, 4112 |
| HpyCH4IV | ACGT | 6 cut(s) | 976, 1034, 1058, 1341, 3032, 3963 |
| HpySE526I | ACGT | 6 cut(s) | 976, 1034, 1058, 1341, 3032, 3963 |
| Hsp92I | GRCGYC | 2 cut(s) | 279, 2747 |
| HspAI | GCGC | 1 cut(s) | 3244 |
| Ksp22I | TGATCA | 2 cut(s) | 1351, 3976 |
| LmnI | GCTCC | 8 cut(s) | 19, 478, 653, 1007, 1038, 1315, 3895, 4120 |
| LweI | GCATC | 9 cut(s) | 928, 958, 1015, 1275, 1423, 1627, 2103, 2395, 3364 |
| MaeI | CTAG | 7 cut(s) | 1824, 1974, 2585, 2634, 3146, 3377, 3899 |
| MaeII | ACGT | 6 cut(s) | 976, 1034, 1058, 1341, 3032, 3963 |
| MbiI | CCGCTC | 1 cut(s) | 14 |
| MfeI | CAATTG | 3 cut(s) | 1584, 1881, 3741 |
| MflI | RGATCY | 5 cut(s) | 797, 1369, 2581, 3323, 3872 |
| MhlI | GDGCHC | 5 cut(s) | 108, 1012, 1043, 1312, 4117 |
| MlyI | GAGTC | 5 cut(s) | 226, 387, 1324, 3706, 3767 |
| MmeI | TCCRAC | 3 cut(s) | 1518, 1888, 2478 |
| Mph1103I | ATGCAT | 1 cut(s) | 3019 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1263, 2155, 2718 |
| MslI | CAYNNNNRTG | 4 cut(s) | 538, 3002, 3486, 3948 |
| MspA1I | CMGCKG | 1 cut(s) | 71 |
| MspCI | CTTAAG | 2 cut(s) | 1163, 4034 |
| MspI | CCGG | 9 cut(s) | 102, 227, 243, 320, 390, 1683, 2285, 3119, 3668 |
| MunI | CAATTG | 3 cut(s) | 1584, 1881, 3741 |
| Mva1269I | GAATGC | 1 cut(s) | 674 |
| MvaI | CCWGG | 9 cut(s) | 248, 795, 991, 1044, 1902, 2448, 2656, 2979, 3816 |
| MvnI | CGCG | 2 cut(s) | 203, 861 |
| NciI | CCSGG | 3 cut(s) | 103, 321, 3668 |
| NcoI | CCATGG | 1 cut(s) | 3600 |
| NlaIV | GGNNCC | 7 cut(s) | 106, 446, 1040, 2772, 2919, 3367, 3665 |
| NmuCI | GTSAC | 6 cut(s) | 326, 869, 1512, 2144, 2366, 3204 |
| NruI | TCGCGA | 1 cut(s) | 203 |
| NsbI | TGCGCA | 1 cut(s) | 3245 |
| NsiI | ATGCAT | 1 cut(s) | 3019 |
| NspI | RCATGY | 7 cut(s) | 513, 588, 660, 1789, 1871, 2393, 3021 |
| NspV | TTCGAA | 1 cut(s) | 2089 |
| PaeI | GCATGC | 3 cut(s) | 513, 588, 660 |
| PaeR7I | CTCGAG | 2 cut(s) | 234, 1381 |
| PagI | TCATGA | 1 cut(s) | 1389 |
| PciI | ACATGT | 1 cut(s) | 1867 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 36, 39, 42, 45, 54 |
| PctI | GAATGC | 1 cut(s) | 674 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1263, 2155, 2718 |
| PfoI | TCCNGGA | 2 cut(s) | 1900, 3814 |
| PinAI | ACCGGT | 1 cut(s) | 3118 |
| PleI | GAGTC | 5 cut(s) | 226, 387, 1323, 3706, 3766 |
| PpsI | GAGTC | 5 cut(s) | 226, 387, 1323, 3706, 3766 |
| Ppu21I | YACGTR | 1 cut(s) | 1059 |
| PpuMI | RGGWCCY | 2 cut(s) | 2419, 3663 |
| PscI | ACATGT | 1 cut(s) | 1867 |
| PshBI | ATTAAT | 1 cut(s) | 746 |
| Psp124BI | GAGCTC | 1 cut(s) | 1012 |
| Psp5II | RGGWCCY | 2 cut(s) | 2419, 3663 |
| Psp6I | CCWGG | 9 cut(s) | 246, 793, 989, 1042, 1900, 2446, 2654, 2977, 3814 |
| PspEI | GGTNACC | 1 cut(s) | 1151 |
| PspGI | CCWGG | 9 cut(s) | 246, 793, 989, 1042, 1900, 2446, 2654, 2977, 3814 |
| PspN4I | GGNNCC | 7 cut(s) | 106, 446, 1040, 2772, 2919, 3367, 3665 |
| PspOMI | GGGCCC | 1 cut(s) | 104 |
| PspPI | GGNCC | 8 cut(s) | 104, 105, 1422, 2419, 3134, 3663, 3746, 3991 |
| PspPPI | RGGWCCY | 2 cut(s) | 2419, 3663 |
| PspXI | VCTCGAGB | 1 cut(s) | 1381 |
| PstI | CTGCAG | 1 cut(s) | 418 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3168, 3923 |
| PsuI | RGATCY | 5 cut(s) | 797, 1369, 2581, 3323, 3872 |
| PvuII | CAGCTG | 1 cut(s) | 71 |
| RruI | TCGCGA | 1 cut(s) | 203 |
| RsaI | GTAC | 7 cut(s) | 1078, 1344, 2283, 3340, 3520, 3730, 3799 |
| RsaNI | GTAC | 7 cut(s) | 1077, 1343, 2282, 3339, 3519, 3729, 3798 |
| RseI | CAYNNNNRTG | 4 cut(s) | 538, 3002, 3486, 3948 |
| SacI | GAGCTC | 1 cut(s) | 1012 |
| Sau96I | GGNCC | 8 cut(s) | 104, 105, 1422, 2419, 3134, 3663, 3746, 3991 |
| ScaI | AGTACT | 1 cut(s) | 3340 |
| SchI | GAGTC | 5 cut(s) | 226, 387, 1324, 3706, 3767 |
| SduI | GDGCHC | 5 cut(s) | 108, 1012, 1043, 1312, 4117 |
| SfaNI | GCATC | 9 cut(s) | 928, 958, 1015, 1275, 1423, 1627, 2103, 2395, 3364 |
| SfcI | CTRYAG | 4 cut(s) | 414, 1467, 1947, 3169 |
| Sfr274I | CTCGAG | 2 cut(s) | 234, 1381 |
| SfuI | TTCGAA | 1 cut(s) | 2089 |
| SinI | GGWCC | 3 cut(s) | 2419, 3663, 3746 |
| SlaI | CTCGAG | 2 cut(s) | 234, 1381 |
| SmiI | ATTTAAAT | 1 cut(s) | 1108 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 538, 3002, 3486, 3948 |
| SmlI | CTYRAG | 5 cut(s) | 234, 1163, 1381, 2059, 4034 |
| SmoI | CTYRAG | 5 cut(s) | 234, 1163, 1381, 2059, 4034 |
| SpeI | ACTAGT | 1 cut(s) | 1973 |
| SphI | GCATGC | 3 cut(s) | 513, 588, 660 |
| SsiI | CCGC | 9 cut(s) | 12, 99, 210, 260, 752, 786, 859, 1100, 2364 |
| SspI | AATATT | 2 cut(s) | 520, 1500 |
| SspMI | CTAG | 7 cut(s) | 1824, 1974, 2585, 2634, 3146, 3377, 3899 |
| SstI | GAGCTC | 1 cut(s) | 1012 |
| StyI | CCWWGG | 4 cut(s) | 1829, 2322, 2627, 3600 |
| SwaI | ATTTAAAT | 1 cut(s) | 1108 |
| TaaI | ACNGT | 9 cut(s) | 53, 150, 814, 1963, 2775, 3164, 3728, 3947, 4112 |
| TaiI | ACGT | 6 cut(s) | 979, 1037, 1061, 1344, 3035, 3966 |
| TatI | WGTACW | 3 cut(s) | 3338, 3518, 3728 |
| TauI | GCSGC | 1 cut(s) | 755 |
| TscAI | CASTG | 9 cut(s) | 82, 733, 2149, 3004, 3052, 3266, 3553, 4062, 4117 |
| TseFI | GTSAC | 6 cut(s) | 326, 869, 1512, 2144, 2366, 3204 |
| Tsp45I | GTSAC | 6 cut(s) | 326, 869, 1512, 2144, 2366, 3204 |
| TspRI | CASTG | 9 cut(s) | 82, 733, 2149, 3004, 3052, 3266, 3553, 4062, 4117 |
| Vha464I | CTTAAG | 2 cut(s) | 1163, 4034 |
| VpaK11BI | GGWCC | 3 cut(s) | 2419, 3663, 3746 |
| VspI | ATTAAT | 1 cut(s) | 746 |
| XapI | RAATTY | 8 cut(s) | 1070, 1544, 2464, 2965, 3057, 3407, 3856, 3902 |
| XbaI | TCTAGA | 2 cut(s) | 2584, 2633 |
| XceI | RCATGY | 7 cut(s) | 513, 588, 660, 1789, 1871, 2393, 3021 |
| XhoI | CTCGAG | 2 cut(s) | 234, 1381 |
| XmiI | GTMKAC | 1 cut(s) | 3570 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1263, 2155, 2718 |
| XspI | CTAG | 7 cut(s) | 1824, 1974, 2585, 2634, 3146, 3377, 3899 |
| ZrmI | AGTACT | 1 cut(s) | 3340 |
| Zsp2I | ATGCAT | 1 cut(s) | 3019 |