Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000721.1

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Forward (+)

25581 .. 27427

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000721.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgacctccaccgatcctcaccacatagtcgacgacgacgattacgattgggaagcagctgccagagccgtcgacgtcgtcacccagaccaccgcaaagccctcatcttcccattttgcccctcctcccccaattcagaaaccaccgtttcctccaaccttcaacaacaagcccagtacttcacggcagaccactctcgataggttcattgggaagcccgccccaaagcctctgcccgaaattcgagactgcggcgatgagagagtgtcccgtgttcaaattgatgccgaaaaagccaacacttggatgtacccagggaagtgcatatgggattccacaaattgtgatgtttggtatgcgagagatgaactcgtcaagaaggcttccgaagctctcacaactatggatgagaacatctgcagtggtgcattttgcaggaggaaatctggaagttggtttagtttaggacaccccacaatatgtgaggaagaaaaacgtggcaatactgaaattgatttcatttgggaaacagaagaatcttctgcctctcctcctaattcccacttatctaaactcggcaagttgccaagaaagagtgtttccaaacttgggaaggataatgatgtttcttcttctaccccgaaaaattcagctccaatctcttccagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

223

Amino Acids

24.78

Weight (kDa)

5.98

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccI	GTMKAC	2 cut(s)	30, 72
AciI	CCGC	3 cut(s)	93, 219, 252
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	240, 646
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	178, 311
AfiI	CCNNNNNNNGG	2 cut(s)	303, 609
AgsI	TTSAA	2 cut(s)	163, 278
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	59, 392, 653
AluI	AGCT	3 cut(s)	59, 392, 653
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	56, 59
ApoI	RAATTY	2 cut(s)	240, 646
AsuHPI	GGTGA	2 cut(s)	11, 73
BbvI	GCAGC	2 cut(s)	46, 68
BceAI	ACGGC	2 cut(s)	53, 200
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	418
BisI	GCNGC	3 cut(s)	57, 60, 253
BlsI	GCNGC	3 cut(s)	58, 61, 254
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	168
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	313, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 609
Bse1I	ACTGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	313, 314
BseGI	GGATG	2 cut(s)	312, 412
BseLI	CCNNNNNNNGG	2 cut(s)	303, 609
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	114, 540
BseXI	GCAGC	2 cut(s)	46, 68
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	303, 609
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	3 cut(s)	93, 219, 252
BspMAI	CTGCAG	1 cut(s)	422
BspPI	GGATC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	313, 314
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	667
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	312, 412
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 293, 389
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	2 cut(s)	46, 68
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	312, 412
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	177, 310
CviQI	GTAC	2 cut(s)	177, 310
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	667
EarI	CTCTTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	313
FaiI	YATR	6 cut(s)	26, 326, 328, 357, 404, 481
FaqI	GGGAC	1 cut(s)	253
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	1 cut(s)	326
FblI	GTMKAC	2 cut(s)	30, 72
Fnu4HI	GCNGC	3 cut(s)	57, 60, 253
FokI	GGATG	2 cut(s)	319, 419
Fsp4HI	GCNGC	3 cut(s)	57, 60, 253
GluI	GCNGC	3 cut(s)	57, 60, 253
Hin1I	GRCGYC	1 cut(s)	75
HincII	GTYRAC	2 cut(s)	31, 73
HindII	GTYRAC	2 cut(s)	31, 73
HinfI	GANTC	2 cut(s)	332, 536
HphI	GGTGA	2 cut(s)	11, 73
Hpy166II	GTNNAC	2 cut(s)	31, 73
Hpy188I	TCNGA	2 cut(s)	138, 388
Hpy188III	TCNNGA	5 cut(s)	197, 245, 376, 447, 666
Hpy8I	GTNNAC	2 cut(s)	31, 73
Hpy99I	CGWCG	6 cut(s)	35, 38, 41, 74, 77, 80
HpyAV	CCTTC	3 cut(s)	169, 373, 607
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	75, 496
HpyCH4V	TGCA	4 cut(s)	324, 420, 428, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 293, 389
HpySE526I	ACGT	2 cut(s)	75, 496
Hsp92I	GRCGYC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	658
LpnPI	CCDG	7 cut(s)	76, 98, 187, 300, 327, 421, 432
Lsp1109I	GCAGC	2 cut(s)	46, 68
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	2 cut(s)	75, 496
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	7 cut(s)	99, 500, 531, 545, 621, 624, 654
MluCI	AATT	7 cut(s)	132, 240, 279, 340, 510, 556, 646
MmeI	TCCRAC	1 cut(s)	179
MslI	CAYNNNNRTG	2 cut(s)	305, 401
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	65, 293, 389
NdeI	CATATG	1 cut(s)	326
NdeII	GATC	1 cut(s)	13
NmeAIII	GCCGAG	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	79
PasI	CCCWGGG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 42
PfeI	GAWTC	2 cut(s)	332, 536
PflFI	GACNNNGTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	58, 61, 254
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	422
PsyI	GACNNNGTC	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	2 cut(s)	178, 311
RsaNI	GTAC	2 cut(s)	177, 310
RseI	CAYNNNNRTG	2 cut(s)	305, 401
SalI	GTCGAC	2 cut(s)	29, 71
SatI	GCNGC	3 cut(s)	57, 60, 253
Sau3AI	GATC	1 cut(s)	13
ScaI	AGTACT	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	8 cut(s)	8, 61, 78, 161, 206, 394, 499, 655
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	418
SgrDI	CGTCGACG	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	305, 401
Sse9I	AATT	7 cut(s)	132, 240, 279, 340, 510, 556, 646
SsiI	CCGC	3 cut(s)	93, 219, 252
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	2 cut(s)	78, 499
TaqI	TCGA	4 cut(s)	30, 72, 198, 244
TasI	AATT	7 cut(s)	132, 240, 279, 340, 510, 556, 646
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	332, 536
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	56, 59
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	196, 381, 508
TspRI	CASTG	1 cut(s)	427
Tth111I	GACNNNGTC	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	303
XapI	RAATTY	2 cut(s)	240, 646
XmiI	GTMKAC	2 cut(s)	30, 72
ZraI	GACGTC	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.