Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Forward (+)

23485592 .. 23486370

Gene Structure 779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0252600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGACTCTGTCTCAACCGACAAAGCTCCACTTGGTTCTTGATCTTGATCACACACTCCTCCACACCACTCAACTCTGTAATCTGACACCTGAAGAAGACTATCTCAAGATCGGAACCCATCCTCATCGAGATGTTTTCGTGCTTGAAACTGTGATCACCAAGCTCAGGCCCTTTGTCTGGAGATTCTTGGATGAAGCCAGCAAGATGTTTGAGCTGTACATATACACAAAGGGTAACCGGTACTATGCGGGTCTAATGGCTGCCCTGCTTGATCCTAGGAAGGAGTATTTCACTTCCAGTTCTAGAGTCATATCCTGCGAGGATCACGGAATCGTGGGGCGATATAAGAGTCTGGATGCTGTGGTTGGCTGCAATTATTCTAATGTTTTGATCCTTGATGATACGGAAGAGGCATGGACAAAGGAAAGCCGGGACAATCTAATCATTGCCGAGAAGTACTGTTTCTTTAGGCACAAAATGGGCCTACCTAAATGCAAGTCTTATGCTGAGTTAAAGACTGATGAATGTGGATATCTTGCAGCACTTCTTGAAGTGCTTAAGGCAATCAACCGTATCTTCTGTGATGAACTAGCCAGAAATCCTTCTGGTGTAGATGTGAGGGAGGTGTTACAACTGTTTGGAAACAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

218

Amino Acids

25.04

Weight (kDa)

5.98

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	11 - 160	1.7e-23	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	3 cut(s)	269, 333, 388
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	3 cut(s)	221, 245, 461
AfiI	CCNNNNNNNGG	2 cut(s)	168, 180
AflII	CTTAAG	1 cut(s)	560
AgeI	ACCGGT	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	149, 554
AluBI	AGCT	3 cut(s)	28, 166, 217
AluI	AGCT	3 cut(s)	28, 166, 217
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	269, 333, 388
AoxI	GGCC	2 cut(s)	170, 484
ApeKI	GCWGC	3 cut(s)	263, 372, 542
AsiGI	ACCGGT	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	604
AspA2I	CCTAGG	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	171, 484
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	151
AvrII	CCTAGG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	250, 359, 554
BccI	CCATC	1 cut(s)	129
BclI	TGATCA	2 cut(s)	49, 156
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	3 cut(s)	279, 306, 593
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	3 cut(s)	264, 373, 543
BlnI	CCTAGG	1 cut(s)	278
BlsI	GCNGC	3 cut(s)	265, 374, 544
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	171, 484
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 180
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	3 cut(s)	121, 199, 364
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	168, 180
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	181, 501
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	3 cut(s)	250, 359, 554
BshFI	GGCC	2 cut(s)	172, 486
BshTI	ACCGGT	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	241, 433
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	168, 180
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	172, 486
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	7 cut(s)	43, 49, 111, 156, 274, 325, 393
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	2 cut(s)	172, 486
BspCNI	CTCAG	2 cut(s)	180, 502
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	3 cut(s)	269, 333, 388
BspTI	CTTAAG	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	7 cut(s)	43, 49, 111, 156, 274, 325, 393
BssT1I	CCWWGG	1 cut(s)	278
Bst4CI	ACNGT	4 cut(s)	154, 464, 575, 639
Bst6I	CTCTTC	1 cut(s)	405
BstAFI	CTTAAG	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	167, 510
BstEII	GGTNACC	1 cut(s)	236
BstF5I	GGATG	3 cut(s)	121, 199, 364
BstKTI	GATC	7 cut(s)	46, 52, 114, 159, 277, 328, 396
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	7 cut(s)	43, 49, 111, 156, 274, 325, 393
BstPI	GGTNACC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	432
BstV1I	GCAGC	3 cut(s)	250, 359, 554
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	172, 486
BtsCI	GGATG	3 cut(s)	121, 199, 364
Cac8I	GCNNGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	171, 484
Csp6I	GTAC	3 cut(s)	220, 244, 460
CspAI	ACCGGT	1 cut(s)	240
CviAII	CATG	1 cut(s)	417
CviQI	GTAC	3 cut(s)	220, 244, 460
DdeI	CTNAG	2 cut(s)	167, 510
DpnI	GATC	7 cut(s)	45, 51, 113, 158, 276, 327, 395
DpnII	GATC	7 cut(s)	43, 49, 111, 156, 274, 325, 393
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	420
FaiI	YATR	7 cut(s)	224, 226, 249, 314, 348, 418, 507
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	1 cut(s)	416
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	2 cut(s)	49, 156
Fnu4HI	GCNGC	3 cut(s)	264, 373, 543
FokI	GGATG	3 cut(s)	108, 206, 371
Fsp4HI	GCNGC	3 cut(s)	264, 373, 543
FspBI	CTAG	3 cut(s)	279, 306, 593
GluI	GCNGC	3 cut(s)	264, 373, 543
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	172, 486
HapII	CCGG	2 cut(s)	241, 433
Hin1II	CATG	1 cut(s)	420
HinfI	GANTC	5 cut(s)	7, 186, 309, 333, 352
HpaII	CCGG	2 cut(s)	241, 433
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	87, 116
Hpy188III	TCNNGA	8 cut(s)	41, 47, 109, 131, 181, 306, 356, 551
HpyAV	CCTTC	2 cut(s)	277, 615
HpyCH4III	ACNGT	4 cut(s)	154, 464, 575, 639
HpyCH4V	TGCA	3 cut(s)	375, 498, 542
HpyF3I	CTNAG	2 cut(s)	167, 510
Hsp92II	CATG	1 cut(s)	420
Ksp22I	TGATCA	2 cut(s)	49, 156
Kzo9I	GATC	7 cut(s)	43, 49, 111, 156, 274, 325, 393
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	3 cut(s)	250, 359, 554
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	3 cut(s)	279, 306, 593
MaeIII	GTNAC	2 cut(s)	236, 630
MalI	GATC	7 cut(s)	45, 51, 113, 158, 276, 327, 395
MboI	GATC	7 cut(s)	43, 49, 111, 156, 274, 325, 393
MboII	GAAGA	4 cut(s)	107, 110, 422, 571
MfeI	CAATTG	1 cut(s)	649
MluCI	AATT	2 cut(s)	376, 649
MlyI	GAGTC	2 cut(s)	318, 361
MnlI	CCTC	6 cut(s)	71, 135, 316, 406, 615, 619
MroXI	GAANNNNTTC	1 cut(s)	604
MseI	TTAA	2 cut(s)	515, 561
MslI	CAYNNNNRTG	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	241, 433
MspR9I	CCNGG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	649
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	7 cut(s)	43, 49, 111, 156, 274, 325, 393
NlaIII	CATG	1 cut(s)	420
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	186, 333
PflFI	GACNNNGTC	1 cut(s)	10
PinAI	ACCGGT	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	265, 374, 544
PleI	GAGTC	2 cut(s)	317, 360
PpsI	GAGTC	2 cut(s)	317, 360
PspEI	GGTNACC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	171, 484
PsyI	GACNNNGTC	1 cut(s)	10
RsaI	GTAC	3 cut(s)	221, 245, 461
RsaNI	GTAC	3 cut(s)	220, 244, 460
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	515, 561
SatI	GCNGC	3 cut(s)	264, 373, 543
Sau3AI	GATC	7 cut(s)	43, 49, 111, 156, 274, 325, 393
Sau96I	GGNCC	2 cut(s)	171, 484
ScaI	AGTACT	1 cut(s)	461
SchI	GAGTC	2 cut(s)	318, 361
ScrFI	CCNGG	1 cut(s)	434
SetI	ASST	6 cut(s)	30, 94, 168, 219, 493, 630
SfaNI	GCATC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	107, 560
SmoI	CTYRAG	2 cut(s)	107, 560
Sse9I	AATT	2 cut(s)	376, 649
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	3 cut(s)	279, 306, 593
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	4 cut(s)	154, 464, 575, 639
TaqI	TCGA	1 cut(s)	130
TasI	AATT	2 cut(s)	376, 649
TatI	WGTACW	2 cut(s)	219, 459
TfiI	GAWTC	2 cut(s)	186, 333
Tru1I	TTAA	2 cut(s)	515, 561
Tru9I	TTAA	2 cut(s)	515, 561
TseI	GCWGC	3 cut(s)	263, 372, 542
TspDTI	ATGAA	3 cut(s)	210, 540, 603
TspGWI	ACGGA	2 cut(s)	345, 422
Tth111I	GACNNNGTC	1 cut(s)	10
Vha464I	CTTAAG	1 cut(s)	560
XbaI	TCTAGA	1 cut(s)	305
XmaJI	CCTAGG	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	3 cut(s)	279, 306, 593
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.