Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Reverse (-)

52243886 .. 52244915

Gene Structure 1030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGGTGGGGCGTTGGAGGCAGCATAGCTGCAGCTGAGCGGCGTAACGGGGTTTTGGTGGCTAGTTTACTTTCTCACAGTTTTCAGCGCCTATTCCTGCGACCGGGTTCAATCCAAAGCTCTAGAGTAGCATTGGTGAAACCTCTTGTTGTGGAGGTGAAATATGAATCGTTGGAGCTTGTTGCAGCGGATCTTGAGGTGGCGGAGAAACCTAATTCTTCAGAGGAAGAGATGGAAGAGGCTGTTGATGTGAAAGATTCAATGGAGGAAGTGGTGGACGCTTGTGAGCTTCCTAGTTCACTTGAGTTAGTTTTTATTCCGAATGAGGAAGTGACTACCTTGGATTACTCAATTTGGGTATACTTATTTTGTGCTCTTTATATGATGACTTTTTATGACAGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.1

Weight (kDa)

4.32

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	3 cut(s)	40, 188, 203
AclWI	GGATC	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	111, 261
AluBI	AGCT	5 cut(s)	29, 35, 120, 178, 289
AluI	AGCT	5 cut(s)	29, 35, 120, 178, 289
Alw21I	GWGCWC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	198
ApeKI	GCWGC	4 cut(s)	21, 29, 32, 185
AspLEI	GCGC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	148, 169
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	4 cut(s)	16, 33, 44, 197
BccI	CCATC	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	3 cut(s)	63, 123, 294
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	5 cut(s)	22, 30, 33, 41, 186
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	5 cut(s)	23, 31, 34, 42, 187
Bme1390I	CCNGG	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	215, 323
BpuMI	CCSGG	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	4 cut(s)	16, 33, 44, 197
Bsh1285I	CGRYCG	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	190
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	3 cut(s)	40, 188, 203
BspCNI	CTCAG	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	190
BssNAI	GTATAC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	222, 231
BstDEI	CTNAG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	4 cut(s)	16, 33, 44, 197
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	361
CfoI	GCGC	1 cut(s)	90
CseI	GACGC	1 cut(s)	287
CviJI	RGCY	8 cut(s)	29, 35, 62, 120, 178, 242, 289, 402
CviKI_1	RGCY	8 cut(s)	29, 35, 62, 120, 178, 242, 289, 402
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	222, 231
EarI	CTCTTC	2 cut(s)	222, 231
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaiI	YATR	6 cut(s)	26, 165, 361, 381, 383, 396
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	22, 30, 33, 41, 186
Fsp4HI	GCNGC	5 cut(s)	22, 30, 33, 41, 186
FspBI	CTAG	3 cut(s)	63, 123, 294
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	5 cut(s)	22, 30, 33, 41, 186
HaeII	RGCGCY	1 cut(s)	91
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	167, 257
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	148, 169
Hpy166II	GTNNAC	4 cut(s)	68, 277, 299, 361
Hpy188I	TCNGA	2 cut(s)	223, 321
Hpy188III	TCNNGA	2 cut(s)	123, 194
Hpy8I	GTNNAC	4 cut(s)	68, 277, 299, 361
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	32, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	36
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	2 cut(s)	110, 117
Lsp1109I	GCAGC	4 cut(s)	16, 33, 44, 197
MaeI	CTAG	3 cut(s)	63, 123, 294
MaeIII	GTNAC	2 cut(s)	44, 331
MalI	GATC	1 cut(s)	192
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	210, 239, 248
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	2 cut(s)	214, 351
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	8 cut(s)	11, 148, 153, 190, 217, 232, 259, 319
MspA1I	CMGCKG	2 cut(s)	35, 188
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	167, 257
PkrI	GCNGC	5 cut(s)	23, 31, 34, 42, 187
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	35
SatI	GCNGC	5 cut(s)	22, 30, 33, 41, 186
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	194, 302
SmoI	CTYRAG	2 cut(s)	194, 302
Sse9I	AATT	2 cut(s)	214, 351
SsiI	CCGC	3 cut(s)	40, 188, 203
SspMI	CTAG	3 cut(s)	63, 123, 294
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	80
TasI	AATT	2 cut(s)	214, 351
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	167, 257
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	4 cut(s)	21, 29, 32, 185
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	180
XbaI	TCTAGA	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	3 cut(s)	63, 123, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.