Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Reverse (-)

83280644 .. 83282637

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTTGCAAAGGCTAGAGACCTCAACCCCGGCCCTCCGTCTGAACCCTCTACCCGTCTCTACGCCGCCACTCTGAGCCGGCGCTGCCAAAAAATTCGCCGACGAGCTCGACTTTCACTTCTCGCAACTCTTTCACTGTTGTCTTCCATACTCGAACAGGTGAAAATGAGCTCAATTTCGATTCAATATTCAAAGTCTTTCCATAAGAATTGGAACTCTGAAGCTAGACCTTGTACAACTGGTGTTAGTCCAGGATATGAAAGAGATATTGAAAGTCAAAAAAGAAAATTGAGTTTTCCTCATTCAAGATCTATTCCTACTGTCAACTTGGAGCTAGAATTCTCGTTGCAATCAGAGGCTGCAGGCAGAAATATGCAGCACAGTGATGCACATGGGGACATGCTTTATGATGATCAGTTTTATGAGGGCCTTGATCTTGATGCATTGGAAGCACAAGCTACAATTCTTGTTAAGCAGAAATTAGAATTGCCAGTGCAGAAGCCACAGATAAGTCAGTTAAATCCAGAAAATCCTACCCTTGACAGTGCTCCATCATTTGATCTTGGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

191

Amino Acids

21.32

Weight (kDa)

7.79

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	93, 338
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	185, 192, 272, 306
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	5 cut(s)	107, 171, 224, 334, 458
AluI	AGCT	5 cut(s)	107, 171, 224, 334, 458
Alw21I	GWGCWC	3 cut(s)	109, 173, 550
Alw26I	GTCTC	2 cut(s)	12, 62
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	31, 427
ApeKI	GCWGC	3 cut(s)	84, 359, 376
ApoI	RAATTY	2 cut(s)	93, 338
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	32, 427
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	172
BanII	GRGCYC	2 cut(s)	109, 173
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	3 cut(s)	109, 173, 550
BbvI	GCAGC	3 cut(s)	71, 346, 388
BccI	CCATC	1 cut(s)	559
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	12, 62
BfaI	CTAG	3 cut(s)	15, 225, 335
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	85
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	4 cut(s)	66, 85, 360, 377
BlsI	GCNGC	4 cut(s)	67, 86, 361, 378
Bme1390I	CCNGG	2 cut(s)	30, 252
BmgT120I	GGNCC	2 cut(s)	32, 427
BmrFI	CCNGG	2 cut(s)	30, 252
BmsI	GCATC	2 cut(s)	376, 430
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpuMI	CCSGG	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	244, 491
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	2 cut(s)	244, 491
BseXI	GCAGC	3 cut(s)	71, 346, 388
BsgI	GTGCAG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	33, 429
BsiHKAI	GWGCWC	3 cut(s)	109, 173, 550
BsiSI	CCGG	2 cut(s)	30, 79
BslFI	GGGAC	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	12, 62
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	33, 429
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	3 cut(s)	109, 173, 550
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	308, 412, 433, 559
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	2 cut(s)	33, 429
BspCNI	CTCAG	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	78
BsrGI	TGTACA	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	244, 491
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	4 cut(s)	308, 412, 433, 559
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	4 cut(s)	138, 322, 383, 545
BstAUI	TGTACA	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	80, 364
BstDEI	CTNAG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	311, 415, 436, 562
BstMAI	GTCTC	2 cut(s)	12, 62
BstMBI	GATC	4 cut(s)	308, 412, 433, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 449
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	28, 250
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	71, 346, 388
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	33, 429
BtsIMutI	CAGTG	4 cut(s)	134, 388, 498, 550
Cac8I	GCNNGC	2 cut(s)	80, 364
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	32, 427
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	2 cut(s)	392, 400
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	4 cut(s)	310, 414, 435, 561
DpnII	GATC	4 cut(s)	308, 412, 433, 559
Ecl136II	GAGCTC	2 cut(s)	107, 171
Eco24I	GRGCYC	2 cut(s)	109, 173
Eco31I	GGTCTC	1 cut(s)	12
Eco53kI	GAGCTC	2 cut(s)	107, 171
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	2 cut(s)	107, 171
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	109, 173
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	2 cut(s)	395, 403
FaiI	YATR	9 cut(s)	149, 204, 258, 374, 393, 401, 408, 423, 571
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	2 cut(s)	391, 399
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	4 cut(s)	66, 85, 360, 377
FriOI	GRGCYC	2 cut(s)	109, 173
Fsp4HI	GCNGC	4 cut(s)	66, 85, 360, 377
FspBI	CTAG	3 cut(s)	15, 225, 335
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	4 cut(s)	66, 85, 360, 377
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	33, 429
HapII	CCGG	2 cut(s)	30, 79
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	395, 403
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	30, 79
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	43, 75, 220, 355
Hpy188III	TCNNGA	3 cut(s)	306, 437, 524
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	105
HpyCH4III	ACNGT	4 cut(s)	138, 322, 383, 545
HpyCH4V	TGCA	7 cut(s)	8, 349, 362, 376, 389, 443, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 449
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	395, 403
HspAI	GCGC	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	78
KroNI	GCCGGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	308, 412, 433, 559
LmnI	GCTCC	2 cut(s)	331, 553
LpnPI	CCDG	9 cut(s)	43, 92, 143, 225, 237, 264, 348, 504, 537
Lsp1109I	GCAGC	3 cut(s)	71, 346, 388
LweI	GCATC	2 cut(s)	376, 430
MaeI	CTAG	3 cut(s)	15, 225, 335
MalI	GATC	4 cut(s)	310, 414, 435, 561
MboI	GATC	4 cut(s)	308, 412, 433, 559
MboII	GAAGA	1 cut(s)	135
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	3 cut(s)	109, 173, 550
MluCI	AATT	8 cut(s)	93, 174, 208, 287, 338, 462, 479, 485
MnlI	CCTC	6 cut(s)	32, 45, 58, 309, 349, 418
Mph1103I	ATGCAT	1 cut(s)	445
MroNI	GCCGGC	1 cut(s)	78
MseI	TTAA	2 cut(s)	471, 518
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	2 cut(s)	30, 79
MspR9I	CCNGG	2 cut(s)	30, 252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	84, 449
NaeI	GCCGGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	4 cut(s)	308, 412, 433, 559
NgoMIV	GCCGGC	1 cut(s)	78
NlaIII	CATG	2 cut(s)	395, 403
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	403
PdiI	GCCGGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	181
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	67, 86, 361, 378
Psp124BI	GAGCTC	2 cut(s)	109, 173
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	32, 427
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	2 cut(s)	109, 173
SaqAI	TTAA	2 cut(s)	471, 518
SatI	GCNGC	4 cut(s)	66, 85, 360, 377
Sau3AI	GATC	4 cut(s)	308, 412, 433, 559
Sau96I	GGNCC	2 cut(s)	32, 427
ScrFI	CCNGG	2 cut(s)	30, 252
SduI	GDGCHC	3 cut(s)	109, 173, 550
SetI	ASST	8 cut(s)	24, 109, 162, 173, 226, 232, 336, 460
SfaNI	GCATC	2 cut(s)	376, 430
SfcI	CTRYAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	8 cut(s)	93, 174, 208, 287, 338, 462, 479, 485
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	188
SspMI	CTAG	3 cut(s)	15, 225, 335
SstI	GAGCTC	2 cut(s)	109, 173
StyD4I	CCNGG	2 cut(s)	28, 250
TaaI	ACNGT	4 cut(s)	138, 322, 383, 545
TaqI	TCGA	3 cut(s)	109, 153, 179
TasI	AATT	8 cut(s)	93, 174, 208, 287, 338, 462, 479, 485
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	471, 518
Tru9I	TTAA	2 cut(s)	471, 518
TscAI	CASTG	4 cut(s)	141, 388, 498, 550
TseI	GCWGC	3 cut(s)	84, 359, 376
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	4 cut(s)	141, 388, 498, 550
XapI	RAATTY	2 cut(s)	93, 338
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	3 cut(s)	15, 225, 335
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.