Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

18279559 .. 18281122

Gene Structure 1564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGGTCAAGGACTACCGGAGAGATATCTCCATGCACCAACCGGCGAAGGCGAAAGTCAACCACTTAACGGTGCGGTGCCGGAGATGGATATTCCGGCCATCGATCTCAGTCTTCTCTTCTCTTCCTCTGTAGACGGTCAAGAAGAGATGAAGAAACTTCACTCAGCACTCTCTACATGGGGCGTTGTTCAGGTGATGAATCATGGAATTACTGAAGCTTTTCTTGACAAGATTTACAAGCTAACCAAGCAGTTCTTTGCGCTTCCGACCGAAGAGAAACACAAGTGTGCTAGAGAGACAGGTAATATCCAAGGATATGGTAACGATATGATTCTGTCTGATAATCAAGTTCTTGATTGGATCGACCGTTTGTTTCTCACTACTTACCCTGAAGATAAGCGTCAACTTAAATTCTGGCCTCAAGTCCCTGTCGGATTCAGCGAGACGTTAGATGAATACACAATGAAGCAACGGGTATTGATTGAGAAATTCTTTAAGGCTATGGCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAAATGTATGGAGAAAATGCTGTAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCCAAGGCCAGACAAGGTTATTGGGATTAAACCGCATGCTGATGGTTCAGCTATCACTCTTCTCTTACCCGACAAAGATGTCGAAGGGCTTCAGTTTCTTAAAGATGGGAAGTGGTATAAAGCTCCAATAGTTCCTGATACAATTCTTATCACTTTAGGTGATCAAATGGAGATAATGAGTAATGGGATATATAAGAGCCCGGTTCATCGAGTGGTGACCAACAGAGAGAAGGAAAGGATATCTGTGGCAACGTTTTGTGTACCGGGTCTAGACAAAGAGATTCACCCTGCAGATGGGCTTGTGACTGAGGCAAGACCAAGATTGTATAAAACAGTTACCAAGTATGTGGATCTCCACTACAAGTACTATCAACAGGGTCGAAGAACTATTGAAGCTGCATTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

348

Amino Acids

39.61

Weight (kDa)

5.84

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	2 - 76	1.7e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	126 - 222	1.2e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	2 cut(s)	116, 671
AclI	AACGTT	1 cut(s)	890
AclWI	GGATC	2 cut(s)	410, 996
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	3 cut(s)	452, 530, 610
AcuI	CTGAAG	3 cut(s)	276, 453, 713
AfaI	GTAC	2 cut(s)	900, 1004
AfiI	CCNNNNNNNGG	3 cut(s)	34, 110, 932
AgsI	TTSAA	4 cut(s)	19, 615, 622, 1031
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	5 cut(s)	260, 283, 689, 761, 1034
AluI	AGCT	5 cut(s)	260, 283, 689, 761, 1034
Alw26I	GTCTC	2 cut(s)	332, 479
AlwI	GGATC	2 cut(s)	410, 996
AoxI	GGCC	3 cut(s)	138, 458, 644
ApeKI	GCWGC	2 cut(s)	41, 1034
ApoI	RAATTY	3 cut(s)	452, 530, 610
AseI	ATTAAT	1 cut(s)	1040
Asp700I	GAANNNNTTC	2 cut(s)	261, 726
AspLEI	GCGC	1 cut(s)	304
AsuC2I	CCSGG	2 cut(s)	839, 903
AsuHPI	GGTGA	4 cut(s)	247, 809, 865, 914
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	839
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	53, 1021
BccI	CCATC	5 cut(s)	121, 149, 674, 737, 926
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	839, 903
BcoDI	GTCTC	2 cut(s)	332, 479
BfaI	CTAG	4 cut(s)	333, 549, 581, 908
BfmI	CTRYAG	2 cut(s)	171, 927
BisI	GCNGC	2 cut(s)	42, 1035
BlsI	GCNGC	2 cut(s)	43, 1036
BmcAI	AGTACT	1 cut(s)	1004
Bme1390I	CCNGG	2 cut(s)	839, 903
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	839, 903
BpiI	GAAGAC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	447
BpuMI	CCSGG	2 cut(s)	839, 903
Bsa29I	ATCGAT	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	352, 641
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 110, 932
Bse118I	RCCGGY	2 cut(s)	44, 83
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	352, 641
BseLI	CCNNNNNNNGG	3 cut(s)	34, 110, 932
BseMII	CTCAG	3 cut(s)	163, 219, 936
BseXI	GCAGC	2 cut(s)	53, 1021
Bsh1285I	CGRYCG	2 cut(s)	312, 409
BshFI	GGCC	3 cut(s)	140, 460, 646
BshNI	GGYRCC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	144
BsiEI	CGRYCG	2 cut(s)	312, 409
BsiSI	CCGG	7 cut(s)	45, 59, 84, 122, 137, 839, 902
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	3 cut(s)	34, 110, 932
BsmAI	GTCTC	2 cut(s)	332, 479
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	140, 460, 646
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp143I	GATC	5 cut(s)	145, 402, 551, 799, 988
BspACI	CCGC	2 cut(s)	116, 671
BspANI	GGCC	3 cut(s)	140, 460, 646
BspCNI	CTCAG	3 cut(s)	162, 218, 937
BspDI	ATCGAT	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	931
BspPI	GGATC	2 cut(s)	410, 996
BspT107I	GGYRCC	1 cut(s)	118
BsrFI	RCCGGY	2 cut(s)	44, 83
BssAI	RCCGGY	2 cut(s)	44, 83
BssECI	CCNNGG	2 cut(s)	352, 641
BssMI	GATC	5 cut(s)	145, 402, 551, 799, 988
BssT1I	CCWWGG	2 cut(s)	352, 641
Bst4CI	ACNGT	5 cut(s)	25, 113, 179, 410, 973
Bst6I	CTCTTC	6 cut(s)	164, 169, 180, 309, 561, 702
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	3 cut(s)	149, 205, 945
BstEII	GGTNACC	1 cut(s)	853
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	5 cut(s)	148, 405, 554, 802, 991
BstMAI	GTCTC	2 cut(s)	332, 479
BstMBI	GATC	5 cut(s)	145, 402, 551, 799, 988
BstMCI	CGRYCG	2 cut(s)	312, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	677
BstPI	GGTNACC	1 cut(s)	853
BstSCI	CCNGG	2 cut(s)	837, 901
BstSFI	CTRYAG	2 cut(s)	171, 927
BstV1I	GCAGC	2 cut(s)	53, 1021
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	988
BstXI	CCANNNNNNTGG	2 cut(s)	359, 985
BstYI	RGATCY	1 cut(s)	988
Bsu15I	ATCGAT	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	140, 460, 646
BsuTUI	ATCGAT	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	675
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	44, 83
ClaI	ATCGAT	1 cut(s)	144
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	899, 1003
CviAII	CATG	5 cut(s)	74, 219, 245, 636, 674
CviQI	GTAC	2 cut(s)	899, 1003
DdeI	CTNAG	3 cut(s)	149, 205, 945
DpnI	GATC	5 cut(s)	147, 404, 553, 801, 990
DpnII	GATC	5 cut(s)	145, 402, 551, 799, 988
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	6 cut(s)	164, 169, 180, 309, 561, 702
EarI	CTCTTC	6 cut(s)	164, 169, 180, 309, 561, 702
Eco130I	CCWWGG	2 cut(s)	352, 641
Eco24I	GRGCYC	1 cut(s)	839
Eco32I	GATATC	2 cut(s)	68, 879
Eco57I	CTGAAG	3 cut(s)	276, 453, 713
Eco91I	GGTNACC	1 cut(s)	853
EcoO65I	GGTNACC	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	610
EcoRV	GATATC	2 cut(s)	68, 879
EcoT14I	CCWWGG	2 cut(s)	352, 641
EcoT38I	GRGCYC	1 cut(s)	839
ErhI	CCWWGG	2 cut(s)	352, 641
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	5 cut(s)	77, 222, 248, 639, 677
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 281, 313
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	5 cut(s)	73, 218, 244, 635, 673
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	42, 1035
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	2 cut(s)	42, 1035
FspBI	CTAG	4 cut(s)	333, 549, 581, 908
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	2 cut(s)	42, 1035
HaeIII	GGCC	3 cut(s)	140, 460, 646
HapII	CCGG	7 cut(s)	45, 59, 84, 122, 137, 839, 902
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	77, 222, 248, 639, 677
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	2 cut(s)	101, 446
HindII	GTYRAC	2 cut(s)	101, 446
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	5 cut(s)	241, 373, 477, 618, 919
HpaII	CCGG	7 cut(s)	45, 59, 84, 122, 137, 839, 902
HphI	GGTGA	4 cut(s)	247, 809, 865, 914
Hpy166II	GTNNAC	4 cut(s)	101, 175, 446, 899
Hpy188I	TCNGA	4 cut(s)	309, 382, 476, 1046
Hpy188III	TCNNGA	8 cut(s)	19, 182, 266, 395, 581, 615, 773, 908
Hpy8I	GTNNAC	4 cut(s)	101, 175, 446, 899
HpyAV	CCTTC	3 cut(s)	83, 716, 862
HpyCH4III	ACNGT	5 cut(s)	25, 113, 179, 410, 973
HpyCH4IV	ACGT	2 cut(s)	488, 890
HpyCH4V	TGCA	4 cut(s)	41, 77, 929, 1037
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	3 cut(s)	149, 205, 945
HpySE526I	ACGT	2 cut(s)	488, 890
Hsp92II	CATG	5 cut(s)	77, 222, 248, 639, 677
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	5 cut(s)	145, 402, 551, 799, 988
LmnI	GCTCC	1 cut(s)	766
Lsp1109I	GCAGC	2 cut(s)	53, 1021
MaeI	CTAG	4 cut(s)	333, 549, 581, 908
MaeII	ACGT	2 cut(s)	488, 890
MaeIII	GTNAC	4 cut(s)	362, 853, 940, 973
MalI	GATC	5 cut(s)	147, 404, 553, 801, 990
MboI	GATC	5 cut(s)	145, 402, 551, 799, 988
MflI	RGATCY	1 cut(s)	988
MhlI	GDGCHC	1 cut(s)	839
MluCI	AATT	7 cut(s)	249, 452, 530, 560, 571, 610, 780
MmeI	TCCRAC	2 cut(s)	332, 454
MnlI	CCTC	5 cut(s)	25, 178, 471, 642, 940
MroXI	GAANNNNTTC	2 cut(s)	261, 726
MseI	TTAA	6 cut(s)	108, 450, 537, 666, 738, 1040
MslI	CAYNNNNRTG	2 cut(s)	327, 678
MspI	CCGG	7 cut(s)	45, 59, 84, 122, 137, 839, 902
MspR9I	CCNGG	2 cut(s)	839, 903
MwoI	GCNNNNNNNGC	1 cut(s)	289
NciI	CCSGG	2 cut(s)	839, 903
NdeII	GATC	5 cut(s)	145, 402, 551, 799, 988
NlaIII	CATG	5 cut(s)	77, 222, 248, 639, 677
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	853, 940
NspI	RCATGY	1 cut(s)	677
OliI	CACNNNNGTG	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PdmI	GAANNNNTTC	2 cut(s)	261, 726
PfeI	GAWTC	5 cut(s)	241, 373, 477, 618, 919
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	43, 1036
PshBI	ATTAAT	1 cut(s)	1040
Psp1406I	AACGTT	1 cut(s)	890
PspEI	GGTNACC	1 cut(s)	853
PspN4I	GGNNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	931
PsuI	RGATCY	1 cut(s)	988
RsaI	GTAC	2 cut(s)	900, 1004
RsaNI	GTAC	2 cut(s)	899, 1003
RseI	CAYNNNNRTG	2 cut(s)	327, 678
SaqAI	TTAA	6 cut(s)	108, 450, 537, 666, 738, 1040
SatI	GCNGC	2 cut(s)	42, 1035
Sau3AI	GATC	5 cut(s)	145, 402, 551, 799, 988
ScaI	AGTACT	1 cut(s)	1004
ScrFI	CCNGG	2 cut(s)	839, 903
SduI	GDGCHC	1 cut(s)	839
SfcI	CTRYAG	2 cut(s)	171, 927
SmiMI	CAYNNNNRTG	2 cut(s)	327, 678
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
SphI	GCATGC	1 cut(s)	677
Sse9I	AATT	7 cut(s)	249, 452, 530, 560, 571, 610, 780
SsiI	CCGC	2 cut(s)	116, 671
SspMI	CTAG	4 cut(s)	333, 549, 581, 908
StyD4I	CCNGG	2 cut(s)	837, 901
StyI	CCWWGG	2 cut(s)	352, 641
TaaI	ACNGT	5 cut(s)	25, 113, 179, 410, 973
TaiI	ACGT	2 cut(s)	491, 893
TaqI	TCGA	5 cut(s)	144, 405, 720, 847, 1018
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	7 cut(s)	249, 452, 530, 560, 571, 610, 780
TatI	WGTACW	1 cut(s)	1002
TfiI	GAWTC	5 cut(s)	241, 373, 477, 618, 919
Tru1I	TTAA	6 cut(s)	108, 450, 537, 666, 738, 1040
Tru9I	TTAA	6 cut(s)	108, 450, 537, 666, 738, 1040
TseFI	GTSAC	2 cut(s)	853, 940
TseI	GCWGC	2 cut(s)	41, 1034
Tsp45I	GTSAC	2 cut(s)	853, 940
TspDTI	ATGAA	6 cut(s)	206, 254, 510, 521, 623, 833
Van91I	CCANNNNNTGG	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	1040
XapI	RAATTY	3 cut(s)	452, 530, 610
XbaI	TCTAGA	2 cut(s)	580, 907
XceI	RCATGY	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	2 cut(s)	261, 726
XspI	CTAG	4 cut(s)	333, 549, 581, 908
ZrmI	AGTACT	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.