Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Reverse (-)

90502851 .. 90505860

Gene Structure 3010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTGAATCTCCCACTCCTGCCAAGGTCGAGTTAATAGCAACCAAAACTGTGCAAGAGCAACTCACTGAAGGAGAACTACTAGTACCACAGAAATATATTCTCAAAGATGGTGTCCCACTTCCAAATGCTTCTGTTGAGTTGATGGATGTTCCAGTTATTGATCTTGGTCTCCTTACACCTTCCTCAATCAGTGTGGAAGAACTTGACAAACTCAGATCAGCTCTTAGTACAGGGTTGGAAGAGAAGCAGAAATATTTGAGGCCAGTCGAGGATTTTGAAGGATATGGGAATGACATGGTTTTTTCAGAGAAGGAAACACTTGATTGGACTGACAGACTATACCTTACTGCGTATCCACCAGACCAGCGCAAGCTCAAGCTTTGGCCTGAAAATCCCAAATCTTTTAGGGATACTCTAGACCAATATACCAGTAAGTTACAGGTGACAACAGAAACTGTCCTTAAGGCCATGGCTTGGTCATTGAATTTGAAGGAAGATTGCTTTCTGGACAAGTATGGAGAACAAAGGAAAATGGATGCTAGGTTTAACTTATATCCTCCTTGTTCAAGGCCTGATCGCGTCCACGGTTTCAAGCCACATTCAGATAGTTCAATAATCACCATTGTCTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGGACTCCCATTATATTGACTAATGGACTGTTCAAGAGCCCAGAGCACAAGGTAGTGATAAATGCAGAAAAGGAGAGGATCTCTGTGGCTGTGTTCTGTGTCCCGGATTCGGAGACAGAGATTGAACCCTTTGAAAGCCTCATCAATGAGTCAAGGCCAAGAAAGGTTGTGCTACTTGTGCATGAATATGCAACAAAGGACAAAGAAGTAGAGGGTCTTCAAGTTTTGGTGGATGGTAAATGGGTTACAGTCCCCATTGTGCCACAGGCCATTGTTGTTAATCTTAGTGATCAAGTGCAGATTATGAGTAATGGCATATTCAAGGGCCCACTGCACAGGGTGATGAAGCTATCTGTGGCCTTGCTTAATGAACCAGATCCTGATACTGAGATTAGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGGTCATACAGAAATGTCAAAAATTATGGCAATATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

384

Amino Acids

43.75

Weight (kDa)

5.1

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	183 - 263	2e-19	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy	PF03171	296 - 343	2.3e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccII	CGCG	1 cut(s)	582
AclWI	GGATC	2 cut(s)	770, 1055
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	1024
AfaI	GTAC	2 cut(s)	87, 232
AfiI	CCNNNNNNNGG	2 cut(s)	477, 793
AflII	CTTAAG	1 cut(s)	464
AhlI	ACTAGT	1 cut(s)	82
AluBI	AGCT	4 cut(s)	224, 376, 382, 1033
AluI	AGCT	4 cut(s)	224, 376, 382, 1033
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	3 cut(s)	176, 791, 1097
AlwI	GGATC	2 cut(s)	770, 1055
AlwNI	CAGNNNCTG	2 cut(s)	458, 1064
AoxI	GGCC	9 cut(s)	263, 386, 468, 572, 839, 951, 1009, 1041, 1109
ApaI	GGGCCC	1 cut(s)	1013
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	1009, 1010
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	3 cut(s)	457, 613, 1036
BaeGI	GKGCMC	1 cut(s)	1013
BanII	GRGCYC	2 cut(s)	725, 1013
BarI	GAAGNNNNNNTAC	4 cut(s)	63, 95, 885, 917
BbsI	GAAGAC	2 cut(s)	647, 893
Bbv12I	GWGCWC	1 cut(s)	732
BccI	CCATC	3 cut(s)	104, 139, 911
BciVI	GTATCC	2 cut(s)	366, 406
BclI	TGATCA	2 cut(s)	673, 973
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	3 cut(s)	176, 791, 1097
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	3 cut(s)	83, 419, 543
BfrI	CTTAAG	1 cut(s)	464
BfuI	GTATCC	2 cut(s)	366, 406
Bme1390I	CCNGG	1 cut(s)	788
BmgT120I	GGNCC	2 cut(s)	1009, 1010
BmiI	GGNNCC	1 cut(s)	1011
BmrFI	CCNGG	1 cut(s)	788
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	2 cut(s)	647, 893
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	788
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	4 cut(s)	24, 471, 586, 1112
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 793
Bse1I	ACTGG	4 cut(s)	155, 266, 432, 1082
BseDI	CCNNGG	4 cut(s)	24, 471, 586, 1112
BseGI	GGATG	3 cut(s)	154, 544, 922
BseLI	CCNNNNNNNGG	2 cut(s)	477, 793
BseMII	CTCAG	2 cut(s)	229, 1062
BseNI	ACTGG	4 cut(s)	155, 266, 432, 1082
BseSI	GKGCMC	1 cut(s)	1013
BsgI	GTGCAG	2 cut(s)	1001, 1001
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	9 cut(s)	265, 388, 470, 574, 841, 953, 1011, 1043, 1111
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	788
BslFI	GGGAC	3 cut(s)	101, 770, 920
BslI	CCNNNNNNNGG	2 cut(s)	477, 793
BsmAI	GTCTC	3 cut(s)	176, 791, 1097
BsmFI	GGGAC	3 cut(s)	101, 770, 920
BsnI	GGCC	9 cut(s)	265, 388, 470, 574, 841, 953, 1011, 1043, 1111
Bso31I	GGTCTC	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	1009
Bsp1286I	GDGCHC	3 cut(s)	725, 732, 1013
Bsp143I	GATC	7 cut(s)	163, 218, 577, 673, 762, 973, 1060
Bsp19I	CCATGG	1 cut(s)	471
BspANI	GGCC	9 cut(s)	265, 388, 470, 574, 841, 953, 1011, 1043, 1111
BspCNI	CTCAG	2 cut(s)	228, 1063
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	1011
BspPI	GGATC	2 cut(s)	770, 1055
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	4 cut(s)	155, 266, 432, 1082
BssECI	CCNNGG	4 cut(s)	24, 471, 586, 1112
BssMI	GATC	7 cut(s)	163, 218, 577, 673, 762, 973, 1060
BssT1I	CCWWGG	3 cut(s)	24, 471, 1112
Bst4CI	ACNGT	5 cut(s)	52, 460, 590, 714, 934
Bst6I	CTCTTC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	4 cut(s)	215, 227, 968, 1071
BstDSI	CCRYGG	2 cut(s)	471, 586
BstF5I	GGATG	3 cut(s)	154, 544, 922
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	7 cut(s)	166, 221, 580, 676, 765, 976, 1063
BstMAI	GTCTC	3 cut(s)	176, 791, 1097
BstMBI	GATC	7 cut(s)	163, 218, 577, 673, 762, 973, 1060
BstMWI	GCNNNNNNNGC	1 cut(s)	862
BstSCI	CCNGG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	1013
BstUI	CGCG	1 cut(s)	582
BstV2I	GAAGAC	2 cut(s)	647, 893
BstX2I	RGATCY	2 cut(s)	762, 1060
BstYI	RGATCY	2 cut(s)	762, 1060
BsuI	GTATCC	2 cut(s)	366, 406
BsuRI	GGCC	9 cut(s)	265, 388, 470, 574, 841, 953, 1011, 1043, 1111
BtgI	CCRYGG	2 cut(s)	471, 586
BtsCI	GGATG	3 cut(s)	154, 544, 922
BtsI	GCAGTG	1 cut(s)	1013
BtsIMutI	CAGTG	4 cut(s)	66, 199, 1013, 1089
Cac8I	GCNNGC	1 cut(s)	374
CaiI	CAGNNNCTG	2 cut(s)	458, 1064
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	1009, 1010
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	86, 231
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	3 cut(s)	298, 472, 866
CviQI	GTAC	2 cut(s)	86, 231
DdeI	CTNAG	4 cut(s)	215, 227, 968, 1071
DpnI	GATC	7 cut(s)	165, 220, 579, 675, 764, 975, 1062
DpnII	GATC	7 cut(s)	163, 218, 577, 673, 762, 973, 1060
DraIII	CACNNNGTG	1 cut(s)	1024
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	3 cut(s)	24, 471, 1112
Eco147I	AGGCCT	1 cut(s)	574
Eco24I	GRGCYC	2 cut(s)	725, 1013
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	1009
EcoT14I	CCWWGG	3 cut(s)	24, 471, 1112
EcoT38I	GRGCYC	2 cut(s)	725, 1013
ErhI	CCWWGG	3 cut(s)	24, 471, 1112
FaeI	CATG	3 cut(s)	301, 475, 869
FaqI	GGGAC	3 cut(s)	101, 770, 920
FatI	CATG	3 cut(s)	297, 471, 865
FbaI	TGATCA	2 cut(s)	673, 973
FokI	GGATG	3 cut(s)	161, 551, 929
FriOI	GRGCYC	2 cut(s)	725, 1013
FspBI	CTAG	3 cut(s)	83, 419, 543
GlaI	GCGC	1 cut(s)	371
HaeIII	GGCC	9 cut(s)	265, 388, 470, 574, 841, 953, 1011, 1043, 1111
HapII	CCGG	1 cut(s)	788
HgaI	GACGC	1 cut(s)	571
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	301, 475, 869
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	4 cut(s)	8, 688, 791, 833
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	3 cut(s)	457, 613, 1036
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	5 cut(s)	218, 310, 607, 666, 796
Hpy188III	TCNNGA	4 cut(s)	419, 509, 718, 1064
Hpy8I	GTNNAC	1 cut(s)	586
HpyAV	CCTTC	6 cut(s)	65, 192, 275, 307, 487, 644
HpyCH4III	ACNGT	5 cut(s)	52, 460, 590, 714, 934
HpyCH4V	TGCA	7 cut(s)	55, 634, 749, 865, 875, 982, 1018
HpyF10VI	GCNNNNNNNGC	1 cut(s)	862
HpyF3I	CTNAG	4 cut(s)	215, 227, 968, 1071
Hsp92II	CATG	3 cut(s)	301, 475, 869
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	2 cut(s)	673, 973
Kzo9I	GATC	7 cut(s)	163, 218, 577, 673, 762, 973, 1060
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	3 cut(s)	83, 419, 543
MaeIII	GTNAC	3 cut(s)	438, 445, 928
MalI	GATC	7 cut(s)	165, 220, 579, 675, 764, 975, 1062
MboI	GATC	7 cut(s)	163, 218, 577, 673, 762, 973, 1060
MboII	GAAGA	5 cut(s)	212, 254, 509, 647, 893
MflI	RGATCY	2 cut(s)	762, 1060
MhlI	GDGCHC	3 cut(s)	725, 732, 1013
MluCI	AATT	3 cut(s)	487, 659, 1135
MlyI	GAGTC	2 cut(s)	682, 842
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	7 cut(s)	196, 255, 265, 570, 753, 833, 889
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	5 cut(s)	35, 465, 549, 963, 1050
MslI	CAYNNNNRTG	1 cut(s)	870
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	1 cut(s)	788
MspR9I	CCNGG	1 cut(s)	788
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	1 cut(s)	862
NciI	CCSGG	1 cut(s)	788
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	7 cut(s)	163, 218, 577, 673, 762, 973, 1060
NlaIII	CATG	3 cut(s)	301, 475, 869
NlaIV	GGNNCC	1 cut(s)	1011
NmuCI	GTSAC	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	8, 791
PflMI	CCANNNNNTGG	1 cut(s)	477
PfoI	TCCNGGA	1 cut(s)	786
PleI	GAGTC	2 cut(s)	682, 841
PpsI	GAGTC	2 cut(s)	682, 841
PspN4I	GGNNCC	1 cut(s)	1011
PspOMI	GGGCCC	1 cut(s)	1009
PspPI	GGNCC	2 cut(s)	1009, 1010
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
PstNI	CAGNNNCTG	2 cut(s)	458, 1064
PsuI	RGATCY	2 cut(s)	762, 1060
RsaI	GTAC	2 cut(s)	87, 232
RsaNI	GTAC	2 cut(s)	86, 231
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	5 cut(s)	35, 465, 549, 963, 1050
Sau3AI	GATC	7 cut(s)	163, 218, 577, 673, 762, 973, 1060
Sau96I	GGNCC	2 cut(s)	1009, 1010
SchI	GAGTC	2 cut(s)	682, 842
ScrFI	CCNGG	1 cut(s)	788
SduI	GDGCHC	3 cut(s)	725, 732, 1013
SfaNI	GCATC	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	2 cut(s)	377, 464
SmoI	CTYRAG	2 cut(s)	377, 464
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	3 cut(s)	487, 659, 1135
SseBI	AGGCCT	1 cut(s)	574
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	3 cut(s)	83, 419, 543
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	1 cut(s)	786
StyI	CCWWGG	3 cut(s)	24, 471, 1112
TaaI	ACNGT	5 cut(s)	52, 460, 590, 714, 934
TaqI	TCGA	2 cut(s)	30, 270
TasI	AATT	3 cut(s)	487, 659, 1135
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	8, 791
Tru1I	TTAA	5 cut(s)	35, 465, 549, 963, 1050
Tru9I	TTAA	5 cut(s)	35, 465, 549, 963, 1050
TscAI	CASTG	4 cut(s)	73, 199, 1020, 1089
TseFI	GTSAC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	3 cut(s)	882, 1043, 1068
TspRI	CASTG	4 cut(s)	73, 199, 1020, 1089
Van91I	CCANNNNNTGG	1 cut(s)	477
Vha464I	CTTAAG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	487
XbaI	TCTAGA	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	3 cut(s)	83, 419, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.