Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

16522995 .. 16525358

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTGAATCTTCTTCCACTATTGCTAAGCCCAAGATAGAGTTAGGATCCAAAACTGTCCAAGAGCTGCTCCTGCTCGCCAAAGGGGAACAACAAGTGCCTGAGAAATATATCCATAAAGTTGGAGCCCCAGATGCTTCTTCTGTCCAGTTGAAGGATATTCCAGTAATTGATCTTGACCTACTCCTCACACCTTCCTCAACCACTCAACAACTTGAGAATTTTCGAACAGCTCTTACCACATGGGGTTGCTTTCAGGTAATAAACCATGGCATGACACCTGAATTCCTAGACGAGGTCCGCGAAATGATAAAACAATTTTTCGCACTTCCATTGGAAGAGAAGCAGAAATACTTGAGAGAAGTCAACGATATTCAAGGATATGGGAACGATAAGGTTATTTCTCAACAACAAACACTTGATTGGACTGACCGGCTATACCTTTCTGTGTATCCACAAGAGGCTCGAAAGCTCAAATTGTGGCCTCAAAATCCCCAATCTTTGAGGGGAACCTTAGAACAATATTCGAGGAAGTTACAAGTGGTAACAAAAACTGTCCTTGTGGCCATGGCGAGGTCATTGAATTTGGATGATAATTGCTTTTGGGAGCAGTATGGAGAAAAAGGGAAAATGGATGTGAGGTTTAACTTATATCCTCCCTGTTCAAGGCCTGATGTTGTCCTAGGTCTCAAAGCACATGCAGATGGAACAATAATCACCCTTCTCTTGCAAGACAAACAAGTCGAAGGCCTTCAGTTTCTTAAAGATGATCAGTGGTTTAGAGCTCCCATTGTTCCTGAGGCGCTTCTCATTAATGTCGGTGATCTGGCAGAGATATTGAGCAATGGAATATTCAAGAGCCCTGTACACAGGGTATTGACAAATCCAGACAAGGAGAGGATTTCTTTGGCTGCTTTCTGCTTGCCTGAATTAGATAAAGAGACTGAACCCTTTGAAAGCCTGGTCAATGAGTCAACGCCAAAATTGTACAAGAAGGTGAAAAATTATGATCGCATATTTTTCGACTACTACCAGCAGGGGAGGAGACCAATTGAAGCATCAAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

357

Amino Acids

40.76

Weight (kDa)

5.77

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	740
AccII	CGCG	1 cut(s)	303
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	2 cut(s)	42, 55
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	4 cut(s)	220, 284, 583, 1065
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	2 cut(s)	867, 989
AfiI	CCNNNNNNNGG	4 cut(s)	154, 295, 573, 666
AgsI	TTSAA	7 cut(s)	154, 377, 583, 666, 856, 956, 1055
AjnI	CCWGG	1 cut(s)	960
AluBI	AGCT	4 cut(s)	67, 233, 472, 785
AluI	AGCT	4 cut(s)	67, 233, 472, 785
Alw21I	GWGCWC	1 cut(s)	787
Alw26I	GTCTC	3 cut(s)	692, 935, 1039
AlwI	GGATC	2 cut(s)	42, 55
AoxI	GGCC	4 cut(s)	482, 564, 668, 748
ApeKI	GCWGC	2 cut(s)	67, 911
ApoI	RAATTY	4 cut(s)	220, 284, 583, 1065
AseI	ATTAAT	1 cut(s)	813
Asp700I	GAANNNNTTC	1 cut(s)	750
AspA2I	CCTAGG	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	3 cut(s)	709, 833, 1009
AsuII	TTCGAA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	298
AvrII	CCTAGG	1 cut(s)	682
AxyI	CCTNAGG	1 cut(s)	798
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	47
BanII	GRGCYC	3 cut(s)	130, 787, 863
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
Bbv12I	GWGCWC	1 cut(s)	787
BbvI	GCAGC	2 cut(s)	54, 898
BccI	CCATC	1 cut(s)	698
BcgI	CGANNNNNNTGC	2 cut(s)	1003, 1037
BciT130I	CCWGG	1 cut(s)	962
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	3 cut(s)	692, 935, 1039
BfaI	CTAG	2 cut(s)	290, 683
BfoI	RGCGCY	1 cut(s)	806
BfuI	GTATCC	1 cut(s)	462
BisI	GCNGC	2 cut(s)	68, 912
BlnI	CCTAGG	1 cut(s)	682
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	2 cut(s)	69, 913
Bme1390I	CCNGG	1 cut(s)	962
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	3 cut(s)	49, 127, 511
BmrFI	CCNGG	1 cut(s)	962
BmsI	GCATC	2 cut(s)	124, 1067
Bpu1102I	GCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	236, 376
BsaI	GGTCTC	2 cut(s)	692, 1039
BsaJI	CCNNGG	3 cut(s)	268, 567, 682
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 295, 573, 666
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	2 cut(s)	148, 164
Bse21I	CCTNAGG	1 cut(s)	798
Bse3DI	GCAATG	1 cut(s)	850
BseBI	CCWGG	1 cut(s)	962
BseDI	CCNNGG	3 cut(s)	268, 567, 682
BseGI	GGATG	2 cut(s)	595, 640
BseLI	CCNNNNNNNGG	4 cut(s)	154, 295, 573, 666
BseMI	GCAATG	1 cut(s)	850
BseMII	CTCAG	2 cut(s)	93, 789
BseNI	ACTGG	2 cut(s)	148, 164
BseRI	GAGGAG	2 cut(s)	176, 1057
BseXI	GCAGC	2 cut(s)	54, 898
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	484, 566, 670, 750
BsiHKAI	GWGCWC	1 cut(s)	787
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	4 cut(s)	154, 295, 573, 666
BsmAI	GTCTC	3 cut(s)	692, 935, 1039
BsnI	GGCC	4 cut(s)	484, 566, 670, 750
Bso31I	GGTCTC	2 cut(s)	692, 1039
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	3 cut(s)	130, 787, 863
Bsp1407I	TGTACA	2 cut(s)	865, 987
Bsp143I	GATC	5 cut(s)	47, 172, 769, 823, 1009
Bsp1720I	GCTNAGC	1 cut(s)	27
Bsp19I	CCATGG	2 cut(s)	268, 567
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	4 cut(s)	484, 566, 670, 750
BspCNI	CTCAG	2 cut(s)	94, 790
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	49, 127, 511
BspPI	GGATC	2 cut(s)	42, 55
BspT104I	TTCGAA	1 cut(s)	226
BspTNI	GGTCTC	2 cut(s)	692, 1039
BsrDI	GCAATG	1 cut(s)	850
BsrFI	RCCGGY	1 cut(s)	432
BsrGI	TGTACA	2 cut(s)	865, 987
BsrI	ACTGG	2 cut(s)	148, 164
BssAI	RCCGGY	1 cut(s)	432
BssECI	CCNNGG	3 cut(s)	268, 567, 682
BssMI	GATC	5 cut(s)	47, 172, 769, 823, 1009
BssT1I	CCWWGG	3 cut(s)	268, 567, 682
Bst2UI	CCWGG	1 cut(s)	962
Bst4CI	ACNGT	2 cut(s)	58, 556
Bst6I	CTCTTC	1 cut(s)	333
BstAUI	TGTACA	2 cut(s)	865, 987
BstBI	TTCGAA	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	78, 923
BstDEI	CTNAG	4 cut(s)	27, 102, 514, 798
BstDSI	CCRYGG	2 cut(s)	268, 567
BstENI	CCTNNNNNAGG	2 cut(s)	293, 664
BstF5I	GGATG	2 cut(s)	595, 640
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	806
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	5 cut(s)	50, 175, 772, 826, 1012
BstMAI	GTCTC	3 cut(s)	692, 935, 1039
BstMBI	GATC	5 cut(s)	47, 172, 769, 823, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 134
BstNI	CCWGG	1 cut(s)	962
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	960
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	54, 898
BstX2I	RGATCY	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	798
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	4 cut(s)	484, 566, 670, 750
BtgI	CCRYGG	2 cut(s)	268, 567
BtsCI	GGATG	2 cut(s)	595, 640
BtsIMutI	CAGTG	1 cut(s)	779
Cac8I	GCNNGC	2 cut(s)	78, 923
CfoI	GCGC	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	866, 988
CviAII	CATG	5 cut(s)	243, 269, 274, 568, 698
CviQI	GTAC	2 cut(s)	866, 988
DdeI	CTNAG	4 cut(s)	27, 102, 514, 798
DpnI	GATC	5 cut(s)	49, 174, 771, 825, 1011
DpnII	GATC	5 cut(s)	47, 172, 769, 823, 1009
DrdI	GACNNNNNNGTC	1 cut(s)	740
DseDI	GACNNNNNNGTC	1 cut(s)	740
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	785
Eco130I	CCWWGG	3 cut(s)	268, 567, 682
Eco147I	AGGCCT	2 cut(s)	670, 750
Eco24I	GRGCYC	3 cut(s)	130, 787, 863
Eco31I	GGTCTC	2 cut(s)	692, 1039
Eco47I	GGWCC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	785
Eco57I	CTGAAG	1 cut(s)	737
Eco81I	CCTNAGG	1 cut(s)	798
EcoICRI	GAGCTC	1 cut(s)	785
EcoNI	CCTNNNNNAGG	2 cut(s)	293, 664
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	960
EcoT14I	CCWWGG	3 cut(s)	268, 567, 682
EcoT38I	GRGCYC	3 cut(s)	130, 787, 863
ErhI	CCWWGG	3 cut(s)	268, 567, 682
FaeI	CATG	5 cut(s)	246, 272, 277, 571, 701
FatI	CATG	5 cut(s)	242, 268, 273, 567, 697
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	2 cut(s)	68, 912
FokI	GGATG	2 cut(s)	602, 647
FriOI	GRGCYC	3 cut(s)	130, 787, 863
Fsp4HI	GCNGC	2 cut(s)	68, 912
FspBI	CTAG	2 cut(s)	290, 683
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	2 cut(s)	68, 912
HaeII	RGCGCY	1 cut(s)	806
HaeIII	GGCC	4 cut(s)	484, 566, 670, 750
HapII	CCGG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	5 cut(s)	246, 272, 277, 571, 701
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HincII	GTYRAC	2 cut(s)	367, 975
HindII	GTYRAC	2 cut(s)	367, 975
HinfI	GANTC	2 cut(s)	8, 971
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	3 cut(s)	709, 833, 1009
Hpy166II	GTNNAC	3 cut(s)	367, 868, 975
Hpy188III	TCNNGA	4 cut(s)	176, 797, 856, 887
Hpy8I	GTNNAC	3 cut(s)	367, 868, 975
HpyAV	CCTTC	6 cut(s)	148, 204, 731, 740, 761, 988
HpyCH4III	ACNGT	2 cut(s)	58, 556
HpyCH4V	TGCA	2 cut(s)	701, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 134
HpyF3I	CTNAG	4 cut(s)	27, 102, 514, 798
Hsp92II	CATG	5 cut(s)	246, 272, 277, 571, 701
HspAI	GCGC	1 cut(s)	803
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	47, 172, 769, 823, 1009
LmnI	GCTCC	4 cut(s)	75, 125, 607, 790
Lsp1109I	GCAGC	2 cut(s)	54, 898
LweI	GCATC	2 cut(s)	124, 1067
MaeI	CTAG	2 cut(s)	290, 683
MaeIII	GTNAC	2 cut(s)	534, 544
MalI	GATC	5 cut(s)	49, 174, 771, 825, 1011
MboI	GATC	5 cut(s)	47, 172, 769, 823, 1009
MboII	GAAGA	4 cut(s)	3, 6, 132, 350
MfeI	CAATTG	1 cut(s)	1050
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	3 cut(s)	130, 787, 863
MlsI	TGGCCA	1 cut(s)	566
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	566
MroXI	GAANNNNTTC	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	4 cut(s)	645, 762, 813, 1069
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	962
MunI	CAATTG	1 cut(s)	1050
MvaI	CCWGG	1 cut(s)	962
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	73, 134
NcoI	CCATGG	2 cut(s)	268, 567
NdeII	GATC	5 cut(s)	47, 172, 769, 823, 1009
NlaIII	CATG	5 cut(s)	246, 272, 277, 571, 701
NlaIV	GGNNCC	3 cut(s)	49, 127, 511
NspI	RCATGY	1 cut(s)	701
NspV	TTCGAA	1 cut(s)	226
PceI	AGGCCT	2 cut(s)	670, 750
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	69, 913
PleI	GAGTC	1 cut(s)	979
PpsI	GAGTC	1 cut(s)	979
PshBI	ATTAAT	1 cut(s)	813
Psp124BI	GAGCTC	1 cut(s)	787
Psp6I	CCWGG	1 cut(s)	960
PspGI	CCWGG	1 cut(s)	960
PspN4I	GGNNCC	3 cut(s)	49, 127, 511
PspPI	GGNCC	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	220, 252
PsuI	RGATCY	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	867, 989
RsaNI	GTAC	2 cut(s)	866, 988
RseI	CAYNNNNRTG	1 cut(s)	702
SacI	GAGCTC	1 cut(s)	787
SaqAI	TTAA	4 cut(s)	645, 762, 813, 1069
SatI	GCNGC	2 cut(s)	68, 912
Sau3AI	GATC	5 cut(s)	47, 172, 769, 823, 1009
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	1 cut(s)	962
SduI	GDGCHC	3 cut(s)	130, 787, 863
SfaNI	GCATC	2 cut(s)	124, 1067
SfuI	TTCGAA	1 cut(s)	226
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	215, 355
SmoI	CTYRAG	2 cut(s)	215, 355
SseBI	AGGCCT	2 cut(s)	670, 750
SsiI	CCGC	1 cut(s)	301
SspI	AATATT	2 cut(s)	524, 852
SspMI	CTAG	2 cut(s)	290, 683
SstI	GAGCTC	1 cut(s)	787
StuI	AGGCCT	2 cut(s)	670, 750
StyD4I	CCNGG	1 cut(s)	960
StyI	CCWWGG	3 cut(s)	268, 567, 682
TaaI	ACNGT	2 cut(s)	58, 556
TaqI	TCGA	5 cut(s)	226, 466, 527, 744, 1023
TatI	WGTACW	2 cut(s)	865, 987
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	645, 762, 813, 1069
Tru9I	TTAA	4 cut(s)	645, 762, 813, 1069
TscAI	CASTG	1 cut(s)	779
TseI	GCWGC	2 cut(s)	67, 911
TspRI	CASTG	1 cut(s)	779
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	813
XagI	CCTNNNNNAGG	2 cut(s)	293, 664
XapI	RAATTY	4 cut(s)	220, 284, 583, 1065
XceI	RCATGY	1 cut(s)	701
XmaJI	CCTAGG	1 cut(s)	682
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	2 cut(s)	290, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.