Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1876359 .. 1877710

Gene Structure 1352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG026600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTGAATCTTCCACTCCTGCCAAGGTCGAGTTATTAGCCACCAAAACTGTGCAAGAGCAACTCACTGAAGGAGAAGTACTGGTGCCACAGAAATACATTCTCAAAGATGGAATCCCACTCCCAAATGCTTCTGTTGAGTTGATGGATGTTCCAGTTATTGATCTTGGTCTCCTCGCACCTTCCTCATTCAGTATGGAAGAATTTGACAAACTCAGATCAGCTCTTACCAAATGGGGTTGTTTTCAGGTAATAAACCATGGAATGACTCCTGAATTCCTTGACAAAGTCCGTGAAATCACGAAACAATTTTTTGCACTTCCACTGCAAGAGAAGCAGAAATATTTGAGGCCAGTCGACAACATTGAAGGATACGGGAATGACATGGTTTTTTCAGAGCAGCAAACACTTGATTGGACTGATAGACTATACCTTACTGTATATCCACCAGACAAGCGCAAGCTCAAGTTTTGGCCTGAAAATCCCAAATCTTTTAGGGATACTCTAGACCAATATACCAGTAAGTTACAGGTCATAACAGAAACTGTCCTTAAGGCCATGGCGCGGTCATTGAATTTGGAGGAAGATTGCTTTCTGGACAAGTATGGAGAACAGAGGAAAATGGATGCTAGGTTTAACTTCTATCCTCCTTGTTCAAGGCCTGATCGCGTACTAGGTGTCAAGCCACATGCAGATGGATCAATAATCACCCTTCTGTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGAGCTTCAATTGTTCCTGAGGCACTTCTCATTAATGTTGGTGATCAAGTAGAGATATTGACTAATGGACTGTTCAAGAGCCCAGTGCACAAGGTAGTGACAAATGCAGAAAAGGAGAGGATTTCTTTGGCTGCGTTTTGTGTCCCGGATTCAGAGACAGAGATTGAACCCTTTGAAAGCCTCATCAATGAGTCAAGGCCAAGGTTGTACAAAAAGTTGAAAAACTACGTTGGCATCTATTTTGAATACTACCAGCAGGGAAGAAGACCAATTGAAGCAGCAATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

353

Amino Acids

40.6

Weight (kDa)

5.18

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 161	1.8e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 306	1.5e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	2 cut(s)	565, 669
AciI	CCGC	1 cut(s)	565
AclWI	GGATC	1 cut(s)	706
AcsI	RAATTY	3 cut(s)	203, 275, 574
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	3 cut(s)	81, 672, 980
AfiI	CCNNNNNNNGG	1 cut(s)	564
AflII	CTTAAG	1 cut(s)	551
AluBI	AGCT	3 cut(s)	224, 463, 776
AluI	AGCT	3 cut(s)	224, 463, 776
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	2 cut(s)	176, 920
Alw44I	GTGCAC	1 cut(s)	857
AlwI	GGATC	1 cut(s)	706
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	5 cut(s)	350, 473, 555, 659, 968
ApaLI	GTGCAC	1 cut(s)	857
ApeKI	GCWGC	3 cut(s)	400, 902, 1049
ApoI	RAATTY	3 cut(s)	203, 275, 574
AseI	ATTAAT	1 cut(s)	804
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	2 cut(s)	459, 565
AsuC2I	CCSGG	1 cut(s)	917
AsuHPI	GGTGA	2 cut(s)	700, 824
AxyI	CCTNAGG	1 cut(s)	789
BaeGI	GKGCMC	1 cut(s)	861
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	854
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	2 cut(s)	734, 1042
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	2 cut(s)	412, 889
BccI	CCATC	3 cut(s)	104, 139, 689
BciVI	GTATCC	2 cut(s)	365, 493
BclI	TGATCA	2 cut(s)	760, 814
BcnI	CCSGG	1 cut(s)	917
BcoDI	GTCTC	2 cut(s)	176, 920
BfaI	CTAG	3 cut(s)	506, 630, 674
BfrI	CTTAAG	1 cut(s)	551
BfuI	GTATCC	2 cut(s)	365, 493
BisI	GCNGC	3 cut(s)	401, 903, 1050
BlsI	GCNGC	3 cut(s)	402, 904, 1051
BmcAI	AGTACT	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	917
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	917
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	616, 1014
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	2 cut(s)	734, 1042
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	917
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	4 cut(s)	24, 259, 558, 971
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse1I	ACTGG	5 cut(s)	87, 155, 353, 519, 854
Bse21I	CCTNAGG	1 cut(s)	789
BseDI	CCNNGG	4 cut(s)	24, 259, 558, 971
BseGI	GGATG	2 cut(s)	154, 631
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	229, 780
BseNI	ACTGG	5 cut(s)	87, 155, 353, 519, 854
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	861
BseXI	GCAGC	2 cut(s)	412, 889
Bsh1236I	CGCG	2 cut(s)	565, 669
BshFI	GGCC	5 cut(s)	352, 475, 557, 661, 970
BshNI	GGYRCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmAI	GTCTC	2 cut(s)	176, 920
BsmFI	GGGAC	1 cut(s)	899
BsnI	GGCC	5 cut(s)	352, 475, 557, 661, 970
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	854, 861
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	6 cut(s)	163, 218, 664, 698, 760, 814
Bsp19I	CCATGG	2 cut(s)	259, 558
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	5 cut(s)	352, 475, 557, 661, 970
BspCNI	CTCAG	2 cut(s)	228, 781
BspFNI	CGCG	2 cut(s)	565, 669
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	85
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	5 cut(s)	87, 155, 353, 519, 854
BssECI	CCNNGG	4 cut(s)	24, 259, 558, 971
BssMI	GATC	6 cut(s)	163, 218, 664, 698, 760, 814
BssT1I	CCWWGG	4 cut(s)	24, 259, 558, 971
Bst4CI	ACNGT	4 cut(s)	52, 439, 547, 843
BstAFI	CTTAAG	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	978
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	215, 789
BstDSI	CCRYGG	2 cut(s)	259, 558
BstF5I	GGATG	2 cut(s)	154, 631
BstFNI	CGCG	2 cut(s)	565, 669
BstHHI	GCGC	2 cut(s)	459, 565
BstKTI	GATC	6 cut(s)	166, 221, 667, 701, 763, 817
BstMAI	GTCTC	2 cut(s)	176, 920
BstMBI	GATC	6 cut(s)	163, 218, 664, 698, 760, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	915
BstSLI	GKGCMC	1 cut(s)	861
BstUI	CGCG	2 cut(s)	565, 669
BstV1I	GCAGC	2 cut(s)	412, 889
BstV2I	GAAGAC	2 cut(s)	734, 1042
Bsu36I	CCTNAGG	1 cut(s)	789
BsuI	GTATCC	2 cut(s)	365, 493
BsuRI	GGCC	5 cut(s)	352, 475, 557, 661, 970
BtgI	CCRYGG	2 cut(s)	259, 558
BtsCI	GGATG	2 cut(s)	154, 631
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	3 cut(s)	66, 323, 861
Cac8I	GCNNGC	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	545
CfoI	GCGC	2 cut(s)	459, 565
Csp6I	GTAC	3 cut(s)	80, 671, 979
CviAII	CATG	4 cut(s)	260, 385, 559, 689
CviQI	GTAC	3 cut(s)	80, 671, 979
DdeI	CTNAG	2 cut(s)	215, 789
DpnI	GATC	6 cut(s)	165, 220, 666, 700, 762, 816
DpnII	GATC	6 cut(s)	163, 218, 664, 698, 760, 814
Eco130I	CCWWGG	4 cut(s)	24, 259, 558, 971
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	789
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	4 cut(s)	24, 259, 558, 971
EcoT38I	GRGCYC	1 cut(s)	854
ErhI	CCWWGG	4 cut(s)	24, 259, 558, 971
FaeI	CATG	4 cut(s)	263, 388, 562, 692
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	4 cut(s)	259, 384, 558, 688
FbaI	TGATCA	2 cut(s)	760, 814
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	401, 903, 1050
FokI	GGATG	2 cut(s)	161, 638
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	3 cut(s)	401, 903, 1050
FspBI	CTAG	3 cut(s)	506, 630, 674
GlaI	GCGC	2 cut(s)	458, 564
GluI	GCNGC	3 cut(s)	401, 903, 1050
HaeIII	GGCC	5 cut(s)	352, 475, 557, 661, 970
HapII	CCGG	1 cut(s)	917
HhaI	GCGC	2 cut(s)	459, 565
Hin1II	CATG	4 cut(s)	263, 388, 562, 692
Hin6I	GCGC	2 cut(s)	457, 563
HinP1I	GCGC	2 cut(s)	457, 563
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	5 cut(s)	8, 114, 268, 920, 962
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	2 cut(s)	700, 824
Hpy166II	GTNNAC	2 cut(s)	358, 859
Hpy188I	TCNGA	4 cut(s)	218, 397, 753, 925
Hpy188III	TCNNGA	6 cut(s)	272, 301, 506, 596, 788, 847
Hpy8I	GTNNAC	2 cut(s)	358, 859
HpyAV	CCTTC	5 cut(s)	65, 192, 362, 722, 731
HpyCH4III	ACNGT	4 cut(s)	52, 439, 547, 843
HpyCH4IV	ACGT	1 cut(s)	999
HpyCH4V	TGCA	7 cut(s)	55, 317, 328, 692, 721, 859, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	2 cut(s)	215, 789
HpySE526I	ACGT	1 cut(s)	999
Hsp92II	CATG	4 cut(s)	263, 388, 562, 692
HspAI	GCGC	2 cut(s)	457, 563
Ksp22I	TGATCA	2 cut(s)	760, 814
Kzo9I	GATC	6 cut(s)	163, 218, 664, 698, 760, 814
Lsp1109I	GCAGC	2 cut(s)	412, 889
LweI	GCATC	2 cut(s)	616, 1014
MaeI	CTAG	3 cut(s)	506, 630, 674
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	2 cut(s)	525, 868
MalI	GATC	6 cut(s)	165, 220, 666, 700, 762, 816
MboI	GATC	6 cut(s)	163, 218, 664, 698, 760, 814
MboII	GAAGA	6 cut(s)	3, 212, 596, 734, 1044, 1047
MfeI	CAATTG	2 cut(s)	780, 1041
MhlI	GDGCHC	2 cut(s)	854, 861
MluCI	AATT	8 cut(s)	203, 275, 308, 574, 746, 780, 1041, 1053
MlyI	GAGTC	2 cut(s)	262, 971
MnlI	CCTC	9 cut(s)	185, 196, 342, 574, 609, 657, 784, 882, 962
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	3 cut(s)	552, 636, 804
MslI	CAYNNNNRTG	1 cut(s)	693
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	917
MunI	CAATTG	2 cut(s)	780, 1041
MvnI	CGCG	2 cut(s)	565, 669
MwoI	GCNNNNNNNGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	917
NcoI	CCATGG	2 cut(s)	259, 558
NdeII	GATC	6 cut(s)	163, 218, 664, 698, 760, 814
NlaIII	CATG	4 cut(s)	263, 388, 562, 692
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	868
NspI	RCATGY	1 cut(s)	692
PceI	AGGCCT	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	8, 114, 920
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	915
PkrI	GCNGC	3 cut(s)	402, 904, 1051
PleI	GAGTC	2 cut(s)	262, 970
PpsI	GAGTC	2 cut(s)	262, 970
PshBI	ATTAAT	1 cut(s)	804
PspN4I	GGNNCC	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	3 cut(s)	81, 672, 980
RsaNI	GTAC	3 cut(s)	80, 671, 979
RseI	CAYNNNNRTG	1 cut(s)	693
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	552, 636, 804
SatI	GCNGC	3 cut(s)	401, 903, 1050
Sau3AI	GATC	6 cut(s)	163, 218, 664, 698, 760, 814
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	2 cut(s)	262, 971
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	2 cut(s)	854, 861
SfaNI	GCATC	2 cut(s)	616, 1014
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	2 cut(s)	464, 551
SmoI	CTYRAG	2 cut(s)	464, 551
Sse9I	AATT	8 cut(s)	203, 275, 308, 574, 746, 780, 1041, 1053
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	1 cut(s)	565
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	3 cut(s)	506, 630, 674
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	915
StyI	CCWWGG	4 cut(s)	24, 259, 558, 971
TaaI	ACNGT	4 cut(s)	52, 439, 547, 843
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	2 cut(s)	30, 357
TasI	AATT	8 cut(s)	203, 275, 308, 574, 746, 780, 1041, 1053
TatI	WGTACW	2 cut(s)	79, 978
TfiI	GAWTC	3 cut(s)	8, 114, 920
Tru1I	TTAA	3 cut(s)	552, 636, 804
Tru9I	TTAA	3 cut(s)	552, 636, 804
TscAI	CASTG	3 cut(s)	73, 330, 861
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	3 cut(s)	400, 902, 1049
Tsp45I	GTSAC	1 cut(s)	868
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	73, 330, 861
Tth111I	GACNNNGTC	1 cut(s)	287
Vha464I	CTTAAG	1 cut(s)	551
VneI	GTGCAC	1 cut(s)	857
VspI	ATTAAT	1 cut(s)	804
XapI	RAATTY	3 cut(s)	203, 275, 574
XbaI	TCTAGA	1 cut(s)	505
XceI	RCATGY	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	3 cut(s)	506, 630, 674
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.