Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1160733 .. 1167235

Gene Structure 6503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02160.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACAGCTGAATTCCTTGACGAAGTCCGTGAAATCACAAAACAGTTTTTCGCAATTCCAGTGGAAGAGAAGCGGAAATATCTGAGGGCAGTCAACGATTTTGAAGGATATGGGAACGACATGGTACTTTCAGAGCAGCAAACACTTGATTGGACTGACAGACTATACCTTACTGTATATCCACCAGACCAGCGCAAGTACAAGTTTTGGCCTGAAAATCCCATATCTTTTAGGGATACTCTAGACCAATTTACCAGTAGGTCACAGGTCATAACAGAAACTATCCTTAAGAGCATGGCGAGGTCATTGAATTTGGAGGAAGATTGCTTTATGGACAAGTATGGAGAACAAGGGAAAATGGAGGCTAGGTTTAACTTCTATCCTCCATGTTCAAGGCCTGATCGCATCCTCGGATTCAAGCCACATTCAGATAGTTCAATGATCACCATTCTCTTGCAAGACAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGGGCTCCCATTGTTCCTGAGGCGCTTCTCATTAATGTTGGTGATCAAATAGAGATAATGACTAATGGACTGTTCAAGAGCCCAGTGCACAAGGTAGTGGTAAATGGAGAAAAGGAGAGGATTTCTTTCGCTGTGTTCTGTTTCCCAGATTCAGAGACAGAGATTGAACCCTTTGATTGCCTCATCAATGAGTCACGGCCAAGGTTGTACAAAAAGATGAAAAACTACGGTGACACCTTTTTCGAATACTACCAGCAGGGAAGAAGACCAATCGAAGCAGCAATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

266

Amino Acids

31.22

Weight (kDa)

4.95

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 73	1.4e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	123 - 218	2.9e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	704
AcsI	RAATTY	2 cut(s)	11, 310
AfaI	GTAC	3 cut(s)	126, 200, 716
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	8 cut(s)	104, 310, 393, 418, 438, 482, 583, 674
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	1 cut(s)	656
Alw44I	GTGCAC	1 cut(s)	593
AoxI	GGCC	3 cut(s)	209, 395, 704
ApaLI	GTGCAC	1 cut(s)	593
ApeKI	GCWGC	2 cut(s)	136, 785
ApoI	RAATTY	2 cut(s)	11, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	195, 532
AsuHPI	GGTGA	3 cut(s)	436, 560, 749
AsuII	TTCGAA	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	597
BanII	GRGCYC	2 cut(s)	514, 590
BbsI	GAAGAC	2 cut(s)	470, 778
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	1 cut(s)	148
BceAI	ACGGC	1 cut(s)	719
BciVI	GTATCC	1 cut(s)	229
BclI	TGATCA	3 cut(s)	441, 496, 550
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	242, 366
BfoI	RGCGCY	1 cut(s)	533
BfrI	CTTAAG	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	229
BisI	GCNGC	2 cut(s)	137, 786
BlsI	GCNGC	2 cut(s)	138, 787
BmiI	GGNNCC	1 cut(s)	513
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	2 cut(s)	470, 778
Bpu14I	TTCGAA	1 cut(s)	750
BsaJI	CCNNGG	2 cut(s)	409, 707
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bse1I	ACTGG	3 cut(s)	59, 255, 590
Bse21I	CCTNAGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	409, 707
BseGI	GGATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	74, 516
BseNI	ACTGG	3 cut(s)	59, 255, 590
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	3 cut(s)	211, 397, 706
BsiHKAI	GWGCWC	1 cut(s)	597
BsmAI	GTCTC	1 cut(s)	656
BsnI	GGCC	3 cut(s)	211, 397, 706
Bsp119I	TTCGAA	1 cut(s)	750
Bsp1286I	GDGCHC	3 cut(s)	514, 590, 597
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	400, 441, 496, 550
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	3 cut(s)	211, 397, 706
BspCNI	CTCAG	2 cut(s)	75, 517
BspLI	GGNNCC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	750
BspTI	CTTAAG	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	59, 255, 590
BssECI	CCNNGG	2 cut(s)	409, 707
BssMI	GATC	4 cut(s)	400, 441, 496, 550
BssT1I	CCWWGG	1 cut(s)	707
Bst4CI	ACNGT	4 cut(s)	45, 175, 579, 737
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	750
BstDEI	CTNAG	2 cut(s)	83, 525
BstF5I	GGATG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	2 cut(s)	195, 532
BstKTI	GATC	4 cut(s)	403, 444, 499, 553
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	400, 441, 496, 550
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	470, 778
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	211, 397, 706
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	66, 597
CfoI	GCGC	2 cut(s)	195, 532
Csp6I	GTAC	3 cut(s)	125, 199, 715
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	3 cut(s)	121, 295, 387
CviJI	RGCY	8 cut(s)	8, 211, 365, 397, 421, 512, 588, 706
CviKI_1	RGCY	8 cut(s)	8, 211, 365, 397, 421, 512, 588, 706
CviQI	GTAC	3 cut(s)	125, 199, 715
DdeI	CTNAG	2 cut(s)	83, 525
DpnI	GATC	4 cut(s)	402, 443, 498, 552
DpnII	GATC	4 cut(s)	400, 441, 496, 550
EaeI	YGGCCR	1 cut(s)	704
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	514, 590
Eco81I	CCTNAGG	1 cut(s)	525
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	707
EcoT38I	GRGCYC	2 cut(s)	514, 590
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	3 cut(s)	124, 298, 390
FatI	CATG	3 cut(s)	120, 294, 386
FbaI	TGATCA	3 cut(s)	441, 496, 550
Fnu4HI	GCNGC	2 cut(s)	137, 786
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	2 cut(s)	514, 590
Fsp4HI	GCNGC	2 cut(s)	137, 786
FspBI	CTAG	2 cut(s)	242, 366
GlaI	GCGC	2 cut(s)	194, 531
GluI	GCNGC	2 cut(s)	137, 786
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	211, 397, 706
HhaI	GCGC	2 cut(s)	195, 532
Hin1II	CATG	3 cut(s)	124, 298, 390
Hin6I	GCGC	2 cut(s)	193, 530
HinP1I	GCGC	2 cut(s)	193, 530
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	414, 656, 698
HphI	GGTGA	3 cut(s)	436, 560, 749
Hpy166II	GTNNAC	2 cut(s)	94, 595
Hpy188I	TCNGA	6 cut(s)	84, 133, 413, 430, 489, 661
Hpy188III	TCNNGA	3 cut(s)	242, 524, 583
Hpy8I	GTNNAC	2 cut(s)	94, 595
HpyAV	CCTTC	2 cut(s)	98, 467
HpyCH4III	ACNGT	4 cut(s)	45, 175, 579, 737
HpyCH4V	TGCA	2 cut(s)	457, 595
HpyF3I	CTNAG	2 cut(s)	83, 525
Hsp92II	CATG	3 cut(s)	124, 298, 390
HspAI	GCGC	2 cut(s)	193, 530
Ksp22I	TGATCA	3 cut(s)	441, 496, 550
Kzo9I	GATC	4 cut(s)	400, 441, 496, 550
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	2 cut(s)	242, 366
MaeIII	GTNAC	3 cut(s)	261, 699, 737
MalI	GATC	4 cut(s)	402, 443, 498, 552
MboI	GATC	4 cut(s)	400, 441, 496, 550
MboII	GAAGA	5 cut(s)	77, 332, 470, 780, 783
MhlI	GDGCHC	3 cut(s)	514, 590, 597
MluCI	AATT	5 cut(s)	11, 54, 248, 310, 482
MlyI	GAGTC	1 cut(s)	707
MnlI	CCTC	9 cut(s)	78, 294, 310, 355, 393, 419, 520, 618, 698
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	3 cut(s)	288, 372, 540
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	287
NdeII	GATC	4 cut(s)	400, 441, 496, 550
NlaIII	CATG	3 cut(s)	124, 298, 390
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	3 cut(s)	261, 699, 737
NspV	TTCGAA	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	414, 656
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	138, 787
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PshBI	ATTAAT	1 cut(s)	540
PspN4I	GGNNCC	1 cut(s)	513
PsyI	GACNNNGTC	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	3 cut(s)	126, 200, 716
RsaNI	GTAC	3 cut(s)	125, 199, 715
SaqAI	TTAA	3 cut(s)	288, 372, 540
SatI	GCNGC	2 cut(s)	137, 786
Sau3AI	GATC	4 cut(s)	400, 441, 496, 550
SchI	GAGTC	1 cut(s)	707
SduI	GDGCHC	3 cut(s)	514, 590, 597
SfaNI	GCATC	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	5 cut(s)	11, 54, 248, 310, 482
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	2 cut(s)	242, 366
StuI	AGGCCT	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	4 cut(s)	45, 175, 579, 737
TaqI	TCGA	2 cut(s)	750, 780
TasI	AATT	5 cut(s)	11, 54, 248, 310, 482
TatI	WGTACW	2 cut(s)	198, 714
TfiI	GAWTC	2 cut(s)	414, 656
Tru1I	TTAA	3 cut(s)	288, 372, 540
Tru9I	TTAA	3 cut(s)	288, 372, 540
TscAI	CASTG	2 cut(s)	66, 597
TseFI	GTSAC	3 cut(s)	261, 699, 737
TseI	GCWGC	2 cut(s)	136, 785
Tsp45I	GTSAC	3 cut(s)	261, 699, 737
TspDTI	ATGAA	1 cut(s)	740
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	66, 597
Tth111I	GACNNNGTC	1 cut(s)	23
Vha464I	CTTAAG	1 cut(s)	287
VneI	GTGCAC	1 cut(s)	593
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	2 cut(s)	11, 310
XbaI	TCTAGA	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	2 cut(s)	242, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.