Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1779368 .. 1801072

Gene Structure 21705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG026400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTGAATCTTCCACTCCTGCCAAGGCCGAATTATTAGCAACCAAAACTGTGCAAGAGCTACTCACTGAAGGAGAACTACTTGTACCACCACAGAAATTTATTCTCAAAGATGGCATCCCACTTCCAAATGCTTCTGTTGAGTTGATGGATGTTCCAGTTATTGATCTTGGTCTCCTCACACCTTCCTCATTCAGTGTGGAAGAACTTGACAAACTCAGATCAGCCCTTACCACAGGGTGTTGCTTTCATGTAATAAACCATGGAATGACTCCAGAATTCCTTGACAAAGTCCGTGAAATCACCAAACAGTTTTTCGCAATTCCAGTGGAAGAGAAGCAGAAATATTTGAGGCCAGTCGACGATATTGAAGGTTATGGGAATGACATGGTTTTATCAGAGCAGCAAACACTTGATTGGACTGATAGACTATACCTTACTGTATATCCACCAGACCAGCGCAGGCTCGAGTTTTGGCCTGAAAATCCCAAATCTTTTAGGGATACTGTAGACCAATATACCAGTAAGATGCAGGTGATAACAGAAACTGTCCTTAAGGCCATGGCGCGGTCATTGAATTTGGAGGAAGATTGCTTTCTGGACAAGTATGGAGAACAAGGAAAATTGGATGCTAGGTTTAACTTCTATCCTCCATGTTCAAGGCCTGATCGCATCCTCTGTTTCAAGCCACATGCAGATAGTTCAATAATCACCATTGTCTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGGGCTCCCATTGTTCCTGAGGCGCTTCTCATTAATGTTGGTGATCAAGTAGAGGTAACTAAAGCTTTAAATGTCTGTAAACTCAGTGTTTTGGCTAAGACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

293

Amino Acids

33.29

Weight (kDa)

4.78

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	52 - 162	7.7e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 277	1.8e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccI	GTMKAC	2 cut(s)	360, 510
AccII	CGCG	1 cut(s)	568
AciI	CCGC	1 cut(s)	568
AcsI	RAATTY	3 cut(s)	98, 278, 577
AcuI	CTGAAG	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	567
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	6 cut(s)	371, 577, 660, 685, 705, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	61, 839
AluI	AGCT	2 cut(s)	61, 839
Alw26I	GTCTC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	5 cut(s)	27, 353, 476, 558, 662
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	3 cut(s)	98, 278, 577
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	3 cut(s)	462, 568, 799
AsuHPI	GGTGA	4 cut(s)	295, 547, 703, 827
AvaI	CYCGRG	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	781
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	1 cut(s)	737
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	107, 142
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	2 cut(s)	763, 817
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	800
BfrI	CTTAAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	780
BmsI	GCATC	4 cut(s)	126, 519, 619, 681
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	24, 262, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	4 cut(s)	158, 326, 356, 522
Bse21I	CCTNAGG	1 cut(s)	792
BseDI	CCNNGG	3 cut(s)	24, 262, 561
BseGI	GGATG	4 cut(s)	117, 157, 634, 672
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	232, 783, 871
BseNI	ACTGG	4 cut(s)	158, 326, 356, 522
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	5 cut(s)	29, 355, 478, 560, 664
BsiHKCI	CYCGRG	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmAI	GTCTC	1 cut(s)	179
BsnI	GGCC	5 cut(s)	29, 355, 478, 560, 664
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	5 cut(s)	166, 221, 667, 763, 817
Bsp19I	CCATGG	2 cut(s)	262, 561
BspACI	CCGC	1 cut(s)	568
BspANI	GGCC	5 cut(s)	29, 355, 478, 560, 664
BspCNI	CTCAG	3 cut(s)	231, 784, 870
BspFNI	CGCG	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	780
BspMI	ACCTGC	1 cut(s)	523
BspTI	CTTAAG	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	179
BsrI	ACTGG	4 cut(s)	158, 326, 356, 522
BssECI	CCNNGG	3 cut(s)	24, 262, 561
BssMI	GATC	5 cut(s)	166, 221, 667, 763, 817
BssT1I	CCWWGG	3 cut(s)	24, 262, 561
Bst4CI	ACNGT	5 cut(s)	52, 312, 442, 508, 550
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	4 cut(s)	218, 792, 857, 870
BstDSI	CCRYGG	2 cut(s)	262, 561
BstF5I	GGATG	4 cut(s)	117, 157, 634, 672
BstFNI	CGCG	1 cut(s)	568
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	3 cut(s)	462, 568, 799
BstKTI	GATC	5 cut(s)	169, 224, 670, 766, 820
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	5 cut(s)	166, 221, 667, 763, 817
BstNSI	RCATGY	1 cut(s)	695
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	737
Bsu36I	CCTNAGG	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	5 cut(s)	29, 355, 478, 560, 664
BtgI	CCRYGG	2 cut(s)	262, 561
BtsCI	GGATG	4 cut(s)	117, 157, 634, 672
BtsIMutI	CAGTG	4 cut(s)	66, 202, 333, 865
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	464
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	3 cut(s)	462, 568, 799
Csp6I	GTAC	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	6 cut(s)	251, 263, 388, 562, 654, 692
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	4 cut(s)	218, 792, 857, 870
DpnI	GATC	5 cut(s)	168, 223, 669, 765, 819
DpnII	GATC	5 cut(s)	166, 221, 667, 763, 817
DraI	TTTAAA	1 cut(s)	843
DraIII	CACNNNGTG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	3 cut(s)	24, 262, 561
Eco147I	AGGCCT	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	467
EcoRI	GAATTC	1 cut(s)	278
EcoT14I	CCWWGG	3 cut(s)	24, 262, 561
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	3 cut(s)	24, 262, 561
FaeI	CATG	6 cut(s)	254, 266, 391, 565, 657, 695
FatI	CATG	6 cut(s)	250, 262, 387, 561, 653, 691
FbaI	TGATCA	2 cut(s)	763, 817
FblI	GTMKAC	2 cut(s)	360, 510
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	4 cut(s)	104, 164, 641, 659
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	3 cut(s)	461, 567, 798
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	800
HaeIII	GGCC	5 cut(s)	29, 355, 478, 560, 664
HhaI	GCGC	3 cut(s)	462, 568, 799
Hin1II	CATG	6 cut(s)	254, 266, 391, 565, 657, 695
Hin6I	GCGC	3 cut(s)	460, 566, 797
HinP1I	GCGC	3 cut(s)	460, 566, 797
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	837
HinfI	GANTC	2 cut(s)	8, 271
HphI	GGTGA	4 cut(s)	295, 547, 703, 827
Hpy166II	GTNNAC	3 cut(s)	361, 511, 854
Hpy188I	TCNGA	3 cut(s)	221, 400, 756
Hpy188III	TCNNGA	3 cut(s)	275, 599, 791
Hpy8I	GTNNAC	3 cut(s)	361, 511, 854
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	4 cut(s)	65, 195, 365, 734
HpyCH4III	ACNGT	5 cut(s)	52, 312, 442, 508, 550
HpyCH4V	TGCA	4 cut(s)	55, 532, 695, 724
HpyF3I	CTNAG	4 cut(s)	218, 792, 857, 870
Hsp92II	CATG	6 cut(s)	254, 266, 391, 565, 657, 695
HspAI	GCGC	3 cut(s)	460, 566, 797
Ksp22I	TGATCA	2 cut(s)	763, 817
Kzo9I	GATC	5 cut(s)	166, 221, 667, 763, 817
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	4 cut(s)	126, 519, 619, 681
MaeI	CTAG	1 cut(s)	633
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	5 cut(s)	168, 223, 669, 765, 819
MboI	GATC	5 cut(s)	166, 221, 667, 763, 817
MboII	GAAGA	5 cut(s)	3, 215, 344, 599, 737
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	7 cut(s)	32, 98, 278, 321, 577, 623, 749
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	8 cut(s)	188, 199, 345, 577, 660, 686, 787, 820
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	4 cut(s)	555, 639, 807, 842
MspCI	CTTAAG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	568
NcoI	CCATGG	2 cut(s)	262, 561
NdeII	GATC	5 cut(s)	166, 221, 667, 763, 817
NlaIII	CATG	6 cut(s)	254, 266, 391, 565, 657, 695
NlaIV	GGNNCC	1 cut(s)	780
NspI	RCATGY	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	807
PspN4I	GGNNCC	1 cut(s)	780
PspXI	VCTCGAGB	1 cut(s)	467
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
PstNI	CAGNNNCTG	1 cut(s)	548
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	4 cut(s)	555, 639, 807, 842
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	5 cut(s)	166, 221, 667, 763, 817
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	781
SetI	ASST	9 cut(s)	63, 187, 376, 438, 537, 638, 745, 831, 841
SfaNI	GCATC	4 cut(s)	126, 519, 619, 681
SfcI	CTRYAG	1 cut(s)	507
Sfr274I	CTCGAG	1 cut(s)	467
SlaI	CTCGAG	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	467, 554
SmoI	CTYRAG	2 cut(s)	467, 554
Sse9I	AATT	7 cut(s)	32, 98, 278, 321, 577, 623, 749
SseBI	AGGCCT	1 cut(s)	664
SsiI	CCGC	1 cut(s)	568
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	633
StuI	AGGCCT	1 cut(s)	664
StyI	CCWWGG	3 cut(s)	24, 262, 561
TaaI	ACNGT	5 cut(s)	52, 312, 442, 508, 550
TaqI	TCGA	2 cut(s)	360, 468
TasI	AATT	7 cut(s)	32, 98, 278, 321, 577, 623, 749
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	555, 639, 807, 842
Tru9I	TTAA	4 cut(s)	555, 639, 807, 842
TscAI	CASTG	4 cut(s)	73, 202, 333, 865
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	4 cut(s)	73, 202, 333, 865
Tth111I	GACNNNGTC	1 cut(s)	290
Vha464I	CTTAAG	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	3 cut(s)	98, 278, 577
XceI	RCATGY	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	467
XmiI	GTMKAC	2 cut(s)	360, 510
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.