Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Reverse (-)

17048228 .. 17048863

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1108800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGTTATTAGGATCCAAAACTGTCCAGGAAGTGCTCATCCAAGGGGAACAGGTGCCAGAGAAATATATCCATAAAGTTGAAAATGGTGGAGTCCAAGTCCCAGATGCTTCTGCTGCCCAGTTAATAGATGTTCCAGTTATTGATCTTGCTCTCCTCGCAGCTTTTTCAATCTCTGCCGATGAACTTGAGAAGCTTAGATCAGCTCTTGCCACATGGGGTTGCTTCCAGGTAATAAACCAAGGTATGTCGTCGAAATACCTAGACGAGGTCCGAGAAATTGCAAAGCAATTTTTTGCACTTCCAGTGGAAGATAAGAAGAAGTACTTGAGACAAGTCAACGACATTCAAGGATATGGAAACGACATGGTTTTTTTTTCAGAGCAACAAACACTGGAGTGGAGTGATAGACTATACCTTTTGGTGTATCCACAAGATAACCATAAGCTCAACTTGTGGCCTGAAAACCCCAAATCTTTTAGGCTATGCCGTTGCAGGGCGATAGTTGGCATGACGAAAGCACGAACCAGAACGGATGGTATGGCATCAGTGCCAACGATGCCTCGCAGTTTTCATGTGGTACTGCTGTGTGCACTGAGCACGCCCTCGACTGGGGCCCTGATGGTGGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

212

Amino Acids

23.75

Weight (kDa)

5.96

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 156	1.7e-26	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	9, 22
AfaI	GTAC	2 cut(s)	326, 582
AfiI	CCNNNNNNNGG	5 cut(s)	268, 496, 611, 612, 625
AgsI	TTSAA	3 cut(s)	83, 171, 350
AjnI	CCWGG	2 cut(s)	27, 228
AleI	CACNNNNGTG	1 cut(s)	397
AluBI	AGCT	4 cut(s)	164, 196, 206, 448
AluI	AGCT	4 cut(s)	164, 196, 206, 448
Alw21I	GWGCWC	3 cut(s)	39, 595, 602
Alw26I	GTCTC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	2 cut(s)	9, 22
AoxI	GGCC	2 cut(s)	458, 615
ApaI	GGGCCC	1 cut(s)	619
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	2 cut(s)	116, 161
AspS9I	GGNCC	3 cut(s)	271, 615, 616
AvaII	GGWCC	1 cut(s)	271
BaeGI	GKGCMC	2 cut(s)	595, 619
BaeI	ACNNNNGTAYC	2 cut(s)	572, 605
BamHI	GGATCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	619
Bbv12I	GWGCWC	3 cut(s)	39, 595, 602
BbvI	GCAGC	2 cut(s)	103, 173
BccI	CCATC	2 cut(s)	530, 616
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	2 cut(s)	29, 230
BciVI	GTATCC	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	2 cut(s)	117, 162
BlsI	GCNGC	2 cut(s)	118, 163
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	29, 230
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	271, 615, 616
BmiI	GGNNCC	4 cut(s)	16, 57, 616, 617
BmrFI	CCNGG	2 cut(s)	29, 230
BmrI	ACTGGG	2 cut(s)	115, 621
BmsI	GCATC	3 cut(s)	97, 549, 554
BmuI	ACTGGG	2 cut(s)	115, 621
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	2 cut(s)	209, 349
BsaJI	CCNNGG	2 cut(s)	43, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	5 cut(s)	268, 496, 611, 612, 625
Bse1I	ACTGG	5 cut(s)	121, 137, 305, 399, 616
BseBI	CCWGG	2 cut(s)	29, 230
BseDI	CCNNGG	2 cut(s)	43, 241
BseGI	GGATG	2 cut(s)	39, 541
BseLI	CCNNNNNNNGG	5 cut(s)	268, 496, 611, 612, 625
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	5 cut(s)	121, 137, 305, 399, 616
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	2 cut(s)	595, 619
BseXI	GCAGC	2 cut(s)	103, 173
BshFI	GGCC	2 cut(s)	460, 617
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	3 cut(s)	39, 595, 602
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	5 cut(s)	268, 496, 611, 612, 625
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	460, 617
Bsp120I	GGGCCC	1 cut(s)	615
Bsp1286I	GDGCHC	4 cut(s)	39, 595, 602, 619
Bsp143I	GATC	3 cut(s)	14, 145, 200
BspANI	GGCC	2 cut(s)	460, 617
BspCNI	CTCAG	1 cut(s)	588
BspLI	GGNNCC	4 cut(s)	16, 57, 616, 617
BspPI	GGATC	2 cut(s)	9, 22
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	5 cut(s)	121, 137, 305, 399, 616
BssECI	CCNNGG	2 cut(s)	43, 241
BssMI	GATC	3 cut(s)	14, 145, 200
BssT1I	CCWWGG	2 cut(s)	43, 241
Bst2UI	CCWGG	2 cut(s)	29, 230
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	2 cut(s)	197, 596
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	39, 541
BstKTI	GATC	3 cut(s)	17, 148, 203
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	14, 145, 200
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 158, 559
BstNI	CCWGG	2 cut(s)	29, 230
BstSCI	CCNGG	2 cut(s)	27, 228
BstSLI	GKGCMC	2 cut(s)	595, 619
BstV1I	GCAGC	2 cut(s)	103, 173
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	460, 617
BtsCI	GGATG	2 cut(s)	39, 541
BtsIMutI	CAGTG	4 cut(s)	312, 392, 555, 593
Cac8I	GCNNGC	1 cut(s)	602
Cfr13I	GGNCC	3 cut(s)	271, 615, 616
Csp6I	GTAC	2 cut(s)	325, 581
CviAII	CATG	4 cut(s)	216, 367, 511, 575
CviJI	RGCY	7 cut(s)	164, 196, 206, 448, 460, 484, 617
CviKI_1	RGCY	7 cut(s)	164, 196, 206, 448, 460, 484, 617
CviQI	GTAC	2 cut(s)	325, 581
DdeI	CTNAG	2 cut(s)	197, 596
DpnI	GATC	3 cut(s)	16, 147, 202
DpnII	GATC	3 cut(s)	14, 145, 200
Eco130I	CCWWGG	2 cut(s)	43, 241
Eco24I	GRGCYC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	2 cut(s)	615, 616
EcoRII	CCWGG	2 cut(s)	27, 228
EcoT14I	CCWWGG	2 cut(s)	43, 241
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	2 cut(s)	43, 241
FaeI	CATG	4 cut(s)	219, 370, 514, 578
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 437, 469
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	4 cut(s)	215, 366, 510, 574
Fnu4HI	GCNGC	2 cut(s)	117, 162
FokI	GGATG	2 cut(s)	26, 548
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	2 cut(s)	117, 162
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	2 cut(s)	117, 162
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	460, 617
Hin1II	CATG	4 cut(s)	219, 370, 514, 578
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	93
Hpy166II	GTNNAC	2 cut(s)	340, 593
Hpy188I	TCNGA	2 cut(s)	275, 382
Hpy8I	GTNNAC	2 cut(s)	340, 593
Hpy99I	CGWCG	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	284, 299, 495, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 158, 559
HpyF3I	CTNAG	2 cut(s)	197, 596
Hsp92II	CATG	4 cut(s)	219, 370, 514, 578
Kzo9I	GATC	3 cut(s)	14, 145, 200
Lsp1109I	GCAGC	2 cut(s)	103, 173
LweI	GCATC	3 cut(s)	97, 549, 554
MaeI	CTAG	1 cut(s)	263
MalI	GATC	3 cut(s)	16, 147, 202
MboI	GATC	3 cut(s)	14, 145, 200
MboII	GAAGA	2 cut(s)	323, 331
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	4 cut(s)	39, 595, 602, 619
MluCI	AATT	2 cut(s)	279, 290
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	167, 262, 573, 616
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	29, 230
MvaI	CCWGG	2 cut(s)	29, 230
MwoI	GCNNNNNNNGC	3 cut(s)	116, 158, 559
NdeII	GATC	3 cut(s)	14, 145, 200
NlaIII	CATG	4 cut(s)	219, 370, 514, 578
NlaIV	GGNNCC	4 cut(s)	16, 57, 616, 617
OliI	CACNNNNGTG	1 cut(s)	397
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	118, 163
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	27, 228
PspGI	CCWGG	2 cut(s)	27, 228
PspN4I	GGNNCC	4 cut(s)	16, 57, 616, 617
PspOMI	GGGCCC	1 cut(s)	615
PspPI	GGNCC	3 cut(s)	271, 615, 616
PsuI	RGATCY	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	2 cut(s)	326, 582
RsaNI	GTAC	2 cut(s)	325, 581
RseI	CAYNNNNRTG	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	117, 162
Sau3AI	GATC	3 cut(s)	14, 145, 200
Sau96I	GGNCC	3 cut(s)	271, 615, 616
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	29, 230
SduI	GDGCHC	4 cut(s)	39, 595, 602, 619
SfaNI	GCATC	3 cut(s)	97, 549, 554
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	188, 328
SmoI	CTYRAG	2 cut(s)	188, 328
Sse9I	AATT	2 cut(s)	279, 290
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	27, 228
StyI	CCWWGG	2 cut(s)	43, 241
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	254, 608
TasI	AATT	2 cut(s)	279, 290
TatI	WGTACW	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	4 cut(s)	312, 399, 555, 600
TseI	GCWGC	2 cut(s)	116, 161
TspDTI	ATGAA	2 cut(s)	198, 563
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	4 cut(s)	312, 399, 555, 600
Tth111I	GACNNNGTC	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	591
VpaK11BI	GGWCC	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.