Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1887466 .. 1888447

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACACCTGAATTCCTTGACAAACTCCGTGAAATCACAAAACAGTTTTTTGCAATTCCAGTGGAAGAGAAGCAGAAATATTTGAGGCCAGTCGAGGATTTTGAAGGATATGGGAATGACATGGTTTTTTCAGAGCAGGAAACACTTGATTGGACTGACAGACTATACCTTATTGCATATCCACCAGACCAGCGCAAGCTCAAGCTTTGGCCTGAAAATCCCAAATCTTTTAGGGATACTCTAGACCAATATACCAGTAAGTTACAGGTGATAACAGAAACTGTCCTTAAGGCCATGGCGCGGTCATTGAATTTGGAGGAAGATTGCTTTCTGGATAAGTATGGAGAACAGAGGAAAATGGATGCTAGGTTTAACTTATATCCTCCATGTTCAAGGCCTGATCACGTCCACGGTTTCAAGCCACATTCAGATAGTTCAATAATCACCATTGTCTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGGGCTCCCATTGTTCCTGAGGCACTTCTCATTATTGTTGGTGATCAAGTAGAGATATTGACTAATGGACTGTTCAAGAGCCCAGAGCACAAGGTAGTGATAAATGCAGAAAAAGAGAGGATCTCTGTGGCTGTGTTCTGTGTCCCGGATTCAGAGACAGAGATTGAACCCTTTGAAAGCCTCATCAATGAGTCAAGACCAAGGTTGTACAAAAAGGTGAAAAACTACGTTGACATCTATTTCGAATACTACCAGCAGGGAAGAAGACCAATTGAAGCAGCAATGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

265

Amino Acids

31.18

Weight (kDa)

5.03

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	2 - 73	1.4e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	124 - 218	2e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	301
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	635
AcsI	RAATTY	2 cut(s)	11, 310
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	1 cut(s)	300
AflII	CTTAAG	1 cut(s)	287
AjiI	CACGTC	1 cut(s)	406
AluBI	AGCT	2 cut(s)	199, 205
AluI	AGCT	2 cut(s)	199, 205
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	4 cut(s)	86, 209, 291, 395
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	2 cut(s)	11, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	195, 301
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	4 cut(s)	280, 436, 560, 736
AsuII	TTCGAA	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	525
BanII	GRGCYC	2 cut(s)	514, 590
BbsI	GAAGAC	2 cut(s)	470, 778
Bbv12I	GWGCWC	1 cut(s)	597
BciVI	GTATCC	1 cut(s)	229
BclI	TGATCA	3 cut(s)	400, 496, 550
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	242, 366
BfrI	CTTAAG	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	786
BlsI	GCNGC	1 cut(s)	787
Bme1390I	CCNGG	1 cut(s)	653
BmgBI	CACGTC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	653
BmsI	GCATC	1 cut(s)	352
BpiI	GAAGAC	2 cut(s)	470, 778
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
Bpu14I	TTCGAA	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	653
BsaJI	CCNNGG	3 cut(s)	294, 409, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	3 cut(s)	59, 89, 255
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	294, 409, 707
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	3 cut(s)	59, 89, 255
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	4 cut(s)	88, 211, 293, 397
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	4 cut(s)	88, 211, 293, 397
Bsp119I	TTCGAA	1 cut(s)	750
Bsp1286I	GDGCHC	3 cut(s)	514, 590, 597
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	400, 496, 550, 627
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	4 cut(s)	88, 211, 293, 397
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	750
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	795
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	59, 89, 255
BssECI	CCNNGG	3 cut(s)	294, 409, 707
BssMI	GATC	4 cut(s)	400, 496, 550, 627
BssT1I	CCWWGG	2 cut(s)	294, 707
Bst4CI	ACNGT	4 cut(s)	45, 283, 413, 579
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	2 cut(s)	294, 409
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	195, 301
BstKTI	GATC	4 cut(s)	403, 499, 553, 630
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	400, 496, 550, 627
BstSCI	CCNGG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	301
BstV2I	GAAGAC	2 cut(s)	470, 778
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	229
BsuRI	GGCC	4 cut(s)	88, 211, 293, 397
BtgI	CCRYGG	2 cut(s)	294, 409
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	2 cut(s)	195, 301
Csp6I	GTAC	1 cut(s)	715
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	3 cut(s)	121, 295, 387
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	4 cut(s)	402, 498, 552, 629
DpnII	GATC	4 cut(s)	400, 496, 550, 627
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	294, 707
Eco147I	AGGCCT	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	514, 590
Eco81I	CCTNAGG	1 cut(s)	525
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	2 cut(s)	294, 707
EcoT38I	GRGCYC	2 cut(s)	514, 590
ErhI	CCWWGG	2 cut(s)	294, 707
FaeI	CATG	3 cut(s)	124, 298, 390
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	3 cut(s)	120, 294, 386
FbaI	TGATCA	3 cut(s)	400, 496, 550
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	2 cut(s)	514, 590
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	2 cut(s)	242, 366
GlaI	GCGC	2 cut(s)	194, 300
GluI	GCNGC	1 cut(s)	786
HaeIII	GGCC	4 cut(s)	88, 211, 293, 397
HapII	CCGG	1 cut(s)	653
HhaI	GCGC	2 cut(s)	195, 301
Hin1II	CATG	3 cut(s)	124, 298, 390
Hin6I	GCGC	2 cut(s)	193, 299
HinP1I	GCGC	2 cut(s)	193, 299
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	2 cut(s)	656, 698
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	4 cut(s)	280, 436, 560, 736
Hpy166II	GTNNAC	2 cut(s)	409, 739
Hpy188I	TCNGA	4 cut(s)	133, 430, 489, 661
Hpy188III	TCNNGA	5 cut(s)	242, 332, 524, 583, 702
Hpy8I	GTNNAC	2 cut(s)	409, 739
HpyAV	CCTTC	2 cut(s)	98, 467
HpyCH4III	ACNGT	4 cut(s)	45, 283, 413, 579
HpyCH4IV	ACGT	2 cut(s)	405, 735
HpyCH4V	TGCA	4 cut(s)	53, 176, 457, 614
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	2 cut(s)	405, 735
Hsp92II	CATG	3 cut(s)	124, 298, 390
HspAI	GCGC	2 cut(s)	193, 299
Ksp22I	TGATCA	3 cut(s)	400, 496, 550
Kzo9I	GATC	4 cut(s)	400, 496, 550, 627
LmnI	GCTCC	1 cut(s)	517
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	242, 366
MaeII	ACGT	2 cut(s)	405, 735
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	4 cut(s)	402, 498, 552, 629
MboI	GATC	4 cut(s)	400, 496, 550, 627
MboII	GAAGA	5 cut(s)	77, 332, 470, 780, 783
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	3 cut(s)	514, 590, 597
MluCI	AATT	5 cut(s)	11, 54, 310, 482, 777
MlyI	GAGTC	1 cut(s)	707
MnlI	CCTC	8 cut(s)	78, 88, 310, 345, 393, 520, 618, 698
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	288, 372
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	301
NciI	CCSGG	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	4 cut(s)	400, 496, 550, 627
NlaIII	CATG	3 cut(s)	124, 298, 390
NlaIV	GGNNCC	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PspN4I	GGNNCC	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	627
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SaqAI	TTAA	2 cut(s)	288, 372
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	4 cut(s)	400, 496, 550, 627
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	3 cut(s)	514, 590, 597
SfaNI	GCATC	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	200, 287
SmoI	CTYRAG	2 cut(s)	200, 287
Sse9I	AATT	5 cut(s)	11, 54, 310, 482, 777
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	301
SspI	AATATT	1 cut(s)	80
SspMI	CTAG	2 cut(s)	242, 366
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	2 cut(s)	294, 707
TaaI	ACNGT	4 cut(s)	45, 283, 413, 579
TaiI	ACGT	2 cut(s)	408, 738
TaqI	TCGA	2 cut(s)	93, 750
TasI	AATT	5 cut(s)	11, 54, 310, 482, 777
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	2 cut(s)	288, 372
Tru9I	TTAA	2 cut(s)	288, 372
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	785
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	287
XapI	RAATTY	2 cut(s)	11, 310
XbaI	TCTAGA	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	2 cut(s)	242, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.