Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1840089 .. 1842005

Gene Structure 1917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTGAATCTTCCACTCCTGCCAAGGTCGAGTTATTAGCAACCAAAACTGTGCAAGAGCAACTCACTGAAGGAGAAGTACTGGTGCCACAGAAATATATTCTAAAAGATGGAATCCCACTTCCAAATGCTTCTGTTGAGTTGATGGATGTTCCAGTTATTGATCTTGGTCTCCTCGCAACTTCCTCATTCAGTATGGAAGAATTTGACAAACTCAGATCAGCTCTTACCACATGGGGTTGCTTTCAGGTAATAAACCATGGAATGACTCCTGAATTCCTTGACAAAGTCCGTGAAATCACGAAACAATTTTTTGCACTTCCACTGGAAGAGAAGCAGAAATATTTGAGGCCAGTCGACAACATTGAAGGATATGGGAATGACATGGTTTTTTCAGAGCAGCAAACACTTGATTGGACTGATAGACTATACCTGACTGTATATCCACCAGACAAGCGCAAGCTCAAGTTTTGGCCTGAAAATCCCAAATCTTTTAGGGATACTCTAGACCAATATACCAGTAAGTTACAGGTGATAACAGAAACTGTCCTTAAGGGCATGGCGCGGTCATTGAATTTGGAGGAAGATTGCTTTCTGGACAAGTATGGAGAACAAAGGAAAATGGATGCTAGGTTTAACTTCTATCCTCCTTGTTCAAGGCCTGATCGCGTACTAGGTGTCAAGCCACATGCAGATGGAACAATAATCACCCTTCTCTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGAGCCCCAATTGTTCCTGAGGCACTTCTCATTAATGTTGGTGATCAAGCAGAGATATTGACTAATGGACTGTTCAAGAGCCCAGTGCACAAGGTAGTGACAAATGCAGAAAAGGAGAGGATTTCTTTGGCTGCGTTTTGTGTCCCGGATTCAGAGACAGAGATTGAACCCTTTGAAAGCCTCATCAATGAGTCAAGGCCAAGATACCGTGGTGTAAAGGAGTCCTTCCATGGAAATCATGCCTATTTATGTTGGCACCAAATTGCAGCAACAATTCGAGCATCATTGCATTGCCAGAGTGACAAGCCAGATGCAATAATGAACAACCTTGAAGGCAGTTCCCTTGATCATTGGAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

378

Amino Acids

43.05

Weight (kDa)

5.16

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 161	5.8e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 306	4e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	85, 1026
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	2 cut(s)	565, 669
AciI	CCGC	1 cut(s)	565
AcsI	RAATTY	3 cut(s)	203, 275, 574
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	81, 672
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	8 cut(s)	368, 574, 657, 746, 847, 938, 947, 1103
AluBI	AGCT	2 cut(s)	224, 463
AluI	AGCT	2 cut(s)	224, 463
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	2 cut(s)	176, 920
Alw44I	GTGCAC	1 cut(s)	857
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	4 cut(s)	350, 473, 659, 968
ApaLI	GTGCAC	1 cut(s)	857
ApeKI	GCWGC	3 cut(s)	400, 902, 1037
ApoI	RAATTY	3 cut(s)	203, 275, 574
AseI	ATTAAT	1 cut(s)	804
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	2 cut(s)	459, 565
AsuC2I	CCSGG	1 cut(s)	917
AsuHPI	GGTGA	3 cut(s)	544, 700, 824
AxyI	CCTNAGG	1 cut(s)	789
BaeGI	GKGCMC	1 cut(s)	861
BaeI	ACNNNNGTAYC	2 cut(s)	967, 1000
BanI	GGYRCC	2 cut(s)	85, 1026
BanII	GRGCYC	2 cut(s)	778, 854
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	3 cut(s)	412, 889, 1049
BccI	CCATC	3 cut(s)	104, 139, 689
BciVI	GTATCC	1 cut(s)	493
BclI	TGATCA	3 cut(s)	760, 814, 1117
BcnI	CCSGG	1 cut(s)	917
BcoDI	GTCTC	2 cut(s)	176, 920
BfaI	CTAG	3 cut(s)	506, 630, 674
BfrI	CTTAAG	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	3 cut(s)	401, 903, 1038
BlsI	GCNGC	3 cut(s)	402, 904, 1039
BmcAI	AGTACT	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	917
BmiI	GGNNCC	2 cut(s)	87, 1028
BmrFI	CCNGG	1 cut(s)	917
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	3 cut(s)	616, 1061, 1072
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	917
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	4 cut(s)	24, 259, 979, 1000
Bse1I	ACTGG	6 cut(s)	87, 155, 330, 353, 519, 854
Bse21I	CCTNAGG	1 cut(s)	789
Bse3DI	GCAATG	2 cut(s)	1055, 1060
BseDI	CCNNGG	4 cut(s)	24, 259, 979, 1000
BseGI	GGATG	2 cut(s)	154, 631
BseMI	GCAATG	2 cut(s)	1055, 1060
BseMII	CTCAG	2 cut(s)	229, 780
BseNI	ACTGG	6 cut(s)	87, 155, 330, 353, 519, 854
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	861
BseXI	GCAGC	3 cut(s)	412, 889, 1049
Bsh1236I	CGCG	2 cut(s)	565, 669
BshFI	GGCC	4 cut(s)	352, 475, 661, 970
BshNI	GGYRCC	2 cut(s)	85, 1026
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	1 cut(s)	899
BsmAI	GTCTC	2 cut(s)	176, 920
BsmFI	GGGAC	1 cut(s)	899
BsnI	GGCC	4 cut(s)	352, 475, 661, 970
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	3 cut(s)	778, 854, 861
Bsp143I	GATC	6 cut(s)	163, 218, 664, 760, 814, 1117
Bsp19I	CCATGG	2 cut(s)	259, 1000
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	4 cut(s)	352, 475, 661, 970
BspCNI	CTCAG	2 cut(s)	228, 781
BspFNI	CGCG	2 cut(s)	565, 669
BspLI	GGNNCC	2 cut(s)	87, 1028
BspT107I	GGYRCC	2 cut(s)	85, 1026
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	1055, 1060
BsrI	ACTGG	6 cut(s)	87, 155, 330, 353, 519, 854
BssECI	CCNNGG	4 cut(s)	24, 259, 979, 1000
BssMI	GATC	6 cut(s)	163, 218, 664, 760, 814, 1117
BssT1I	CCWWGG	3 cut(s)	24, 259, 1000
Bst4CI	ACNGT	5 cut(s)	52, 439, 547, 843, 980
Bst6I	CTCTTC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	215, 789
BstDSI	CCRYGG	3 cut(s)	259, 979, 1000
BstF5I	GGATG	2 cut(s)	154, 631
BstFNI	CGCG	2 cut(s)	565, 669
BstHHI	GCGC	2 cut(s)	459, 565
BstKTI	GATC	6 cut(s)	166, 221, 667, 763, 817, 1120
BstMAI	GTCTC	2 cut(s)	176, 920
BstMBI	GATC	6 cut(s)	163, 218, 664, 760, 814, 1117
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	915
BstSLI	GKGCMC	1 cut(s)	861
BstUI	CGCG	2 cut(s)	565, 669
BstV1I	GCAGC	3 cut(s)	412, 889, 1049
BstV2I	GAAGAC	1 cut(s)	734
Bsu36I	CCTNAGG	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	4 cut(s)	352, 475, 661, 970
BtgI	CCRYGG	3 cut(s)	259, 979, 1000
BtsCI	GGATG	2 cut(s)	154, 631
BtsIMutI	CAGTG	3 cut(s)	66, 323, 861
Cac8I	GCNNGC	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	545
CfoI	GCGC	2 cut(s)	459, 565
Csp6I	GTAC	2 cut(s)	80, 671
CviAII	CATG	7 cut(s)	234, 260, 385, 559, 689, 1001, 1010
CviQI	GTAC	2 cut(s)	80, 671
DdeI	CTNAG	2 cut(s)	215, 789
DpnI	GATC	6 cut(s)	165, 220, 666, 762, 816, 1119
DpnII	GATC	6 cut(s)	163, 218, 664, 760, 814, 1117
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	3 cut(s)	24, 259, 1000
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	2 cut(s)	778, 854
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	789
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	3 cut(s)	24, 259, 1000
EcoT38I	GRGCYC	2 cut(s)	778, 854
ErhI	CCWWGG	3 cut(s)	24, 259, 1000
FaeI	CATG	7 cut(s)	237, 263, 388, 562, 692, 1004, 1013
FalI	AAGNNNNNCTT	2 cut(s)	980, 1012
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	7 cut(s)	233, 259, 384, 558, 688, 1000, 1009
FbaI	TGATCA	3 cut(s)	760, 814, 1117
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	401, 903, 1038
FokI	GGATG	2 cut(s)	161, 638
FriOI	GRGCYC	2 cut(s)	778, 854
Fsp4HI	GCNGC	3 cut(s)	401, 903, 1038
FspBI	CTAG	3 cut(s)	506, 630, 674
GlaI	GCGC	2 cut(s)	458, 564
GluI	GCNGC	3 cut(s)	401, 903, 1038
HaeIII	GGCC	4 cut(s)	352, 475, 661, 970
HapII	CCGG	1 cut(s)	917
HhaI	GCGC	2 cut(s)	459, 565
Hin1II	CATG	7 cut(s)	237, 263, 388, 562, 692, 1004, 1013
Hin6I	GCGC	2 cut(s)	457, 563
HinP1I	GCGC	2 cut(s)	457, 563
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	6 cut(s)	8, 114, 268, 920, 962, 992
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	3 cut(s)	544, 700, 824
Hpy166II	GTNNAC	2 cut(s)	358, 859
Hpy188I	TCNGA	4 cut(s)	218, 397, 753, 925
Hpy188III	TCNNGA	7 cut(s)	272, 301, 506, 596, 788, 847, 1131
Hpy8I	GTNNAC	2 cut(s)	358, 859
HpyAV	CCTTC	6 cut(s)	65, 362, 722, 731, 1006, 1097
HpyCH4III	ACNGT	5 cut(s)	52, 439, 547, 843, 980
HpyCH4V	TGCA	9 cut(s)	55, 317, 692, 721, 859, 878, 1037, 1060, 1085
HpyF3I	CTNAG	2 cut(s)	215, 789
Hsp92II	CATG	7 cut(s)	237, 263, 388, 562, 692, 1004, 1013
HspAI	GCGC	2 cut(s)	457, 563
Ksp22I	TGATCA	3 cut(s)	760, 814, 1117
Kzo9I	GATC	6 cut(s)	163, 218, 664, 760, 814, 1117
Lsp1109I	GCAGC	3 cut(s)	412, 889, 1049
LweI	GCATC	3 cut(s)	616, 1061, 1072
MaeI	CTAG	3 cut(s)	506, 630, 674
MaeIII	GTNAC	3 cut(s)	525, 868, 1070
MalI	GATC	6 cut(s)	165, 220, 666, 762, 816, 1119
MboI	GATC	6 cut(s)	163, 218, 664, 760, 814, 1117
MboII	GAAGA	5 cut(s)	3, 212, 341, 596, 734
MfeI	CAATTG	1 cut(s)	780
MhlI	GDGCHC	3 cut(s)	778, 854, 861
MluCI	AATT	8 cut(s)	203, 275, 308, 574, 746, 780, 1032, 1044
MlyI	GAGTC	3 cut(s)	262, 971, 1001
MnlI	CCTC	8 cut(s)	185, 196, 342, 574, 657, 784, 882, 962
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	3 cut(s)	552, 636, 804
MslI	CAYNNNNRTG	1 cut(s)	693
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	917
MunI	CAATTG	1 cut(s)	780
MvnI	CGCG	2 cut(s)	565, 669
NciI	CCSGG	1 cut(s)	917
NcoI	CCATGG	2 cut(s)	259, 1000
NdeII	GATC	6 cut(s)	163, 218, 664, 760, 814, 1117
NlaIII	CATG	7 cut(s)	237, 263, 388, 562, 692, 1004, 1013
NlaIV	GGNNCC	2 cut(s)	87, 1028
NmuCI	GTSAC	2 cut(s)	868, 1070
NspI	RCATGY	1 cut(s)	692
PceI	AGGCCT	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	8, 114, 920
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	915
PkrI	GCNGC	3 cut(s)	402, 904, 1039
PleI	GAGTC	3 cut(s)	262, 970, 1000
PpsI	GAGTC	3 cut(s)	262, 970, 1000
PshBI	ATTAAT	1 cut(s)	804
PspN4I	GGNNCC	2 cut(s)	87, 1028
PstNI	CAGNNNCTG	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	81, 672
RsaNI	GTAC	2 cut(s)	80, 671
RseI	CAYNNNNRTG	1 cut(s)	693
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	552, 636, 804
SatI	GCNGC	3 cut(s)	401, 903, 1038
Sau3AI	GATC	6 cut(s)	163, 218, 664, 760, 814, 1117
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	3 cut(s)	262, 971, 1001
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	3 cut(s)	778, 854, 861
SfaNI	GCATC	3 cut(s)	616, 1061, 1072
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	2 cut(s)	464, 551
SmoI	CTYRAG	2 cut(s)	464, 551
Sse9I	AATT	8 cut(s)	203, 275, 308, 574, 746, 780, 1032, 1044
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	1 cut(s)	565
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	3 cut(s)	506, 630, 674
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	915
StyI	CCWWGG	3 cut(s)	24, 259, 1000
TaaI	ACNGT	5 cut(s)	52, 439, 547, 843, 980
TaqI	TCGA	3 cut(s)	30, 357, 1048
TasI	AATT	8 cut(s)	203, 275, 308, 574, 746, 780, 1032, 1044
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	8, 114, 920
Tru1I	TTAA	3 cut(s)	552, 636, 804
Tru9I	TTAA	3 cut(s)	552, 636, 804
TscAI	CASTG	3 cut(s)	73, 330, 861
TseFI	GTSAC	2 cut(s)	868, 1070
TseI	GCWGC	3 cut(s)	400, 902, 1037
Tsp45I	GTSAC	2 cut(s)	868, 1070
TspDTI	ATGAA	1 cut(s)	1106
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	73, 330, 861
Tth111I	GACNNNGTC	1 cut(s)	287
Vha464I	CTTAAG	1 cut(s)	551
VneI	GTGCAC	1 cut(s)	857
VspI	ATTAAT	1 cut(s)	804
XapI	RAATTY	3 cut(s)	203, 275, 574
XbaI	TCTAGA	1 cut(s)	505
XceI	RCATGY	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	3 cut(s)	506, 630, 674
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.