Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425197.1

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Reverse (-)

195 .. 1409

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atggatgttccagttattgatcttggtctcctcacaccttcctcattcagtgtggaagaacttgacaaactcagatcagcacttaccacagggtgttgctttcatgtaataaaccatggaatgactccagaattccttgacaaagtccgtgaaatcaccagacagtttttcgcaattccagtggaagagaagcagaaatatttgaggccagtcgacgatattgaaggttatgggaatgacatggttttatcagagcagcaaacacttgattggactgatagactataccttactgtatatccaccagaccagcgcaggcttgagttttggcctgaaaatcccaaatcatttagggatactctagaccaatataccagtaagatgcaggtgataacagaaactgtccttaaggccatggcgtggtcattgaatttggaggaagattgctttctggacaagtatggagaacaaggaaaattggatgctaggtttaacttctatcctccatgttcaaggcctgatcgcatcctcggtttcaagccacatgcagatagttcaataatcaccattgtcttgcaagataaagaagtggaaggtcttcaatttctgaaagatgatcaatggtttagggctcccattgttcctgaggcgcttctcattaatgttggtgatcaagtagagatattgactaatggactgttcaagagcccagtgcacaaggttgtgataaatggagaaaaggagaggatttctttggctgtattctctttcccggattcagagacagagattaaacccttagaaagcctcatcaatgagtcaaggccaaggttgtacagaaaaatgaaaaactacggtgacatctttttcgaatactaccagcagggaataagaccaatcgaagcagcaataatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

305

Amino Acids

35.36

Weight (kDa)

4.87

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	131, 430
AdeI	CACNNNGTG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	7 cut(s)	224, 430, 513, 538, 558, 602, 703
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	2 cut(s)	32, 776
Alw44I	GTGCAC	1 cut(s)	713
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	5 cut(s)	206, 329, 411, 515, 824
ApaLI	GTGCAC	1 cut(s)	713
ApeKI	GCWGC	2 cut(s)	256, 905
ApoI	RAATTY	2 cut(s)	131, 430
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
AseI	ATTAAT	1 cut(s)	660
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	315, 652
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	5 cut(s)	148, 400, 556, 680, 869
AsuII	TTCGAA	1 cut(s)	870
AxyI	CCTNAGG	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	717
BanII	GRGCYC	2 cut(s)	634, 710
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	2 cut(s)	616, 670
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	32, 776
BfaI	CTAG	2 cut(s)	362, 486
BfoI	RGCGCY	1 cut(s)	653
BfrI	CTTAAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	257, 906
BlsI	GCNGC	2 cut(s)	258, 907
Bme1390I	CCNGG	1 cut(s)	773
BmiI	GGNNCC	1 cut(s)	633
BmrFI	CCNGG	1 cut(s)	773
BmrI	ACTGGG	1 cut(s)	704
BmsI	GCATC	3 cut(s)	372, 472, 534
BmuI	ACTGGG	1 cut(s)	704
BpiI	GAAGAC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	4 cut(s)	115, 414, 529, 827
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	5 cut(s)	11, 179, 209, 375, 710
Bse21I	CCTNAGG	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	115, 414, 529, 827
BseGI	GGATG	3 cut(s)	10, 487, 525
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	85, 636
BseNI	ACTGG	5 cut(s)	11, 179, 209, 375, 710
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	717
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	5 cut(s)	208, 331, 413, 517, 826
BsiHKAI	GWGCWC	1 cut(s)	717
BsiSI	CCGG	1 cut(s)	773
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	2 cut(s)	32, 776
BsnI	GGCC	5 cut(s)	208, 331, 413, 517, 826
Bso31I	GGTCTC	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	870
Bsp1286I	GDGCHC	3 cut(s)	634, 710, 717
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	5 cut(s)	19, 74, 520, 616, 670
Bsp19I	CCATGG	2 cut(s)	115, 414
BspANI	GGCC	5 cut(s)	208, 331, 413, 517, 826
BspCNI	CTCAG	2 cut(s)	84, 637
BspLI	GGNNCC	1 cut(s)	633
BspMI	ACCTGC	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	870
BspTI	CTTAAG	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	5 cut(s)	11, 179, 209, 375, 710
BssECI	CCNNGG	4 cut(s)	115, 414, 529, 827
BssMI	GATC	5 cut(s)	19, 74, 520, 616, 670
BssT1I	CCWWGG	3 cut(s)	115, 414, 827
Bst4CI	ACNGT	5 cut(s)	165, 295, 403, 699, 857
Bst6I	CTCTTC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	407
BstAUI	TGTACA	1 cut(s)	834
BstBI	TTCGAA	1 cut(s)	870
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	3 cut(s)	71, 645, 799
BstDSI	CCRYGG	2 cut(s)	115, 414
BstF5I	GGATG	3 cut(s)	10, 487, 525
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	2 cut(s)	315, 652
BstKTI	GATC	5 cut(s)	22, 77, 523, 619, 673
BstMAI	GTCTC	2 cut(s)	32, 776
BstMBI	GATC	5 cut(s)	19, 74, 520, 616, 670
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	717
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	590
Bsu36I	CCTNAGG	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	5 cut(s)	208, 331, 413, 517, 826
BtgI	CCRYGG	2 cut(s)	115, 414
BtsCI	GGATG	3 cut(s)	10, 487, 525
BtsIMutI	CAGTG	3 cut(s)	55, 186, 717
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	317
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	2 cut(s)	315, 652
Csp6I	GTAC	1 cut(s)	835
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	6 cut(s)	104, 116, 241, 415, 507, 545
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	3 cut(s)	71, 645, 799
DpnI	GATC	5 cut(s)	21, 76, 522, 618, 672
DpnII	GATC	5 cut(s)	19, 74, 520, 616, 670
DraIII	CACNNNGTG	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	3 cut(s)	115, 414, 827
Eco147I	AGGCCT	1 cut(s)	517
Eco24I	GRGCYC	2 cut(s)	634, 710
Eco31I	GGTCTC	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	131
EcoT14I	CCWWGG	3 cut(s)	115, 414, 827
EcoT38I	GRGCYC	2 cut(s)	634, 710
ErhI	CCWWGG	3 cut(s)	115, 414, 827
FaeI	CATG	6 cut(s)	107, 119, 244, 418, 510, 548
FatI	CATG	6 cut(s)	103, 115, 240, 414, 506, 544
FbaI	TGATCA	2 cut(s)	616, 670
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	257, 906
FokI	GGATG	3 cut(s)	17, 494, 512
FriOI	GRGCYC	2 cut(s)	634, 710
Fsp4HI	GCNGC	2 cut(s)	257, 906
FspBI	CTAG	2 cut(s)	362, 486
GlaI	GCGC	2 cut(s)	314, 651
GluI	GCNGC	2 cut(s)	257, 906
GsuI	CTGGAG	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	5 cut(s)	208, 331, 413, 517, 826
HapII	CCGG	1 cut(s)	773
HhaI	GCGC	2 cut(s)	315, 652
Hin1II	CATG	6 cut(s)	107, 119, 244, 418, 510, 548
Hin6I	GCGC	2 cut(s)	313, 650
HinP1I	GCGC	2 cut(s)	313, 650
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	124, 776, 818
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	5 cut(s)	148, 400, 556, 680, 869
Hpy166II	GTNNAC	2 cut(s)	214, 715
Hpy188I	TCNGA	4 cut(s)	74, 253, 609, 781
Hpy188III	TCNNGA	5 cut(s)	128, 362, 452, 644, 703
Hpy8I	GTNNAC	2 cut(s)	214, 715
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	48, 218, 587
HpyCH4III	ACNGT	5 cut(s)	165, 295, 403, 699, 857
HpyCH4V	TGCA	4 cut(s)	385, 548, 577, 715
HpyF3I	CTNAG	3 cut(s)	71, 645, 799
Hsp92II	CATG	6 cut(s)	107, 119, 244, 418, 510, 548
HspAI	GCGC	2 cut(s)	313, 650
Ksp22I	TGATCA	2 cut(s)	616, 670
Kzo9I	GATC	5 cut(s)	19, 74, 520, 616, 670
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	3 cut(s)	372, 472, 534
MaeI	CTAG	2 cut(s)	362, 486
MaeIII	GTNAC	1 cut(s)	857
MalI	GATC	5 cut(s)	21, 76, 522, 618, 672
MboI	GATC	5 cut(s)	19, 74, 520, 616, 670
MboII	GAAGA	4 cut(s)	68, 197, 452, 590
MhlI	GDGCHC	3 cut(s)	634, 710, 717
MluCI	AATT	5 cut(s)	131, 174, 430, 476, 602
MlyI	GAGTC	2 cut(s)	118, 827
MnlI	CCTC	9 cut(s)	41, 52, 198, 430, 513, 539, 640, 738, 818
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	4 cut(s)	408, 492, 660, 792
MspCI	CTTAAG	1 cut(s)	407
MspI	CCGG	1 cut(s)	773
MspR9I	CCNGG	1 cut(s)	773
NciI	CCSGG	1 cut(s)	773
NcoI	CCATGG	2 cut(s)	115, 414
NdeII	GATC	5 cut(s)	19, 74, 520, 616, 670
NlaIII	CATG	6 cut(s)	107, 119, 244, 418, 510, 548
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	1 cut(s)	857
NspI	RCATGY	1 cut(s)	548
NspV	TTCGAA	1 cut(s)	870
PaqCI	CACCTGC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	776
PflFI	GACNNNGTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	420
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	2 cut(s)	258, 907
PleI	GAGTC	2 cut(s)	118, 826
PpsI	GAGTC	2 cut(s)	118, 826
PshBI	ATTAAT	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	633
PstNI	CAGNNNCTG	1 cut(s)	401
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	4 cut(s)	408, 492, 660, 792
SatI	GCNGC	2 cut(s)	257, 906
Sau3AI	GATC	5 cut(s)	19, 74, 520, 616, 670
SchI	GAGTC	2 cut(s)	118, 827
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	3 cut(s)	634, 710, 717
SetI	ASST	8 cut(s)	40, 229, 291, 390, 491, 598, 723, 833
SfaNI	GCATC	3 cut(s)	372, 472, 534
SfuI	TTCGAA	1 cut(s)	870
SmlI	CTYRAG	2 cut(s)	320, 407
SmoI	CTYRAG	2 cut(s)	320, 407
Sse9I	AATT	5 cut(s)	131, 174, 430, 476, 602
SseBI	AGGCCT	1 cut(s)	517
SspI	AATATT	1 cut(s)	200
SspMI	CTAG	2 cut(s)	362, 486
StuI	AGGCCT	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	771
StyI	CCWWGG	3 cut(s)	115, 414, 827
TaaI	ACNGT	5 cut(s)	165, 295, 403, 699, 857
TaqI	TCGA	3 cut(s)	213, 870, 900
TasI	AATT	5 cut(s)	131, 174, 430, 476, 602
TatI	WGTACW	1 cut(s)	834
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	4 cut(s)	408, 492, 660, 792
Tru9I	TTAA	4 cut(s)	408, 492, 660, 792
TscAI	CASTG	3 cut(s)	55, 186, 717
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	2 cut(s)	256, 905
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	2 cut(s)	92, 860
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	3 cut(s)	55, 186, 717
Tth111I	GACNNNGTC	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	420
Vha464I	CTTAAG	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	713
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	2 cut(s)	131, 430
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	2 cut(s)	362, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.