Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1151222 .. 1152586

Gene Structure 1365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02152.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTGAATCATCCACTCCTGCAAAGTTTGAGTTATTAGCAACCAAAACTGTGCAAGAGCAACTCACTGAAGTAGAAATACTAGTACCACAGAACTACATTCTCAAAGATGGAATCCCACTTCCAGATCCTTCTGTTGAGTTTATGGATGTTCCGGTGATTGATCTTGGTCTCCTTACACCTTACTCAGAAGGTGTCGAAGAACTTGACAAACTCAGATCAGCTCTTATTACAGGGTGTTGCTTTCATGTAATAAACCATGGAATGACAGCTGAATTCCTTGACGAAGTACGTGAAATCATAAAACAGTTTTTCGCAATTCCAGTGGAAGAGAAGCAGAAATATCTGAGGGAAGTCAACGATTTTGAAGGATATGGGAATGACATGGTACTTTCAGAGCAGCAAACACTTGATTGGACTGACAGACTATACCTTACTGTATATCCACCAGACCAGCGCAAGTTGAAGTTTTGGCCTGAAAATCCCATATCTTTTAGGGATACTCTAGACCAATTTACCAGTAGGTTACAGGTCATAACAGAAACTATCCTTATGAGCATGGCGAGGTCATTGAATTTGGAGGAAGATTGCTTTATGGACAAGTATGGAGAACAAAGGAAAATGGAGGCTAGGTTTAACTTATATCCTCCATGTTCAAGGCCTGATTGTGTCCTTGGTTTCAAGCCACATTCAGATAGTTCAATAATCACCATTGTCTTGCAAGACAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCGATGGTTTAGGGCTCCCATTGTTCCTGAGGCGCTTCTCATTAATGTTGGTGATCAAGTAGAGATAATGACTAATGGACTGTTCAAGAGCCCAGTGCACAAGGTAGTGATAAATGGAGAAAAGGAGAGGATTTCTTTGGCTGTGTTCTGTTTCCCAGATTCAGGGACAGAGATTAAACCCTTTGATTGCCTCATCAATGAGTCAAGGCCAAGGTTGTACAAAAAGATAAAAAACTACGGTGACATCTTTTTCGAATACTACCAGCAGGGAAGAAGACCAATCGAAGCAGCAATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

354

Amino Acids

40.79

Weight (kDa)

4.78

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 161	8.3e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 306	5.7e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	275, 574
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	4 cut(s)	87, 291, 390, 980
AfiI	CCNNNNNNNGG	1 cut(s)	923
AgsI	TTSAA	8 cut(s)	368, 466, 574, 657, 682, 702, 746, 847
AhlI	ACTAGT	1 cut(s)	82
AluBI	AGCT	2 cut(s)	224, 272
AluI	AGCT	2 cut(s)	224, 272
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	1 cut(s)	176
Alw44I	GTGCAC	1 cut(s)	857
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	3 cut(s)	473, 659, 968
ApaLI	GTGCAC	1 cut(s)	857
ApeKI	GCWGC	2 cut(s)	400, 1049
ApoI	RAATTY	2 cut(s)	275, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	995, 1027
AseI	ATTAAT	1 cut(s)	804
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	2 cut(s)	459, 796
AsuHPI	GGTGA	4 cut(s)	169, 700, 824, 1013
AsuII	TTCGAA	1 cut(s)	1014
AxyI	CCTNAGG	1 cut(s)	789
BaeGI	GKGCMC	1 cut(s)	861
BanII	GRGCYC	2 cut(s)	778, 854
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	2 cut(s)	734, 1042
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	104, 759
BciVI	GTATCC	1 cut(s)	493
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	176
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	3 cut(s)	83, 506, 630
BfoI	RGCGCY	1 cut(s)	797
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	2 cut(s)	401, 1050
BlsI	GCNGC	2 cut(s)	402, 1051
BmiI	GGNNCC	1 cut(s)	777
BmrI	ACTGGG	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	2 cut(s)	734, 1042
Bpu14I	TTCGAA	1 cut(s)	1014
Bsa29I	ATCGAT	1 cut(s)	763
BsaAI	YACGTR	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	259, 673, 971
BsaWI	WCCGGW	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	923
Bse1I	ACTGG	3 cut(s)	323, 519, 854
Bse21I	CCTNAGG	1 cut(s)	789
BseCI	ATCGAT	1 cut(s)	763
BseDI	CCNNGG	3 cut(s)	259, 673, 971
BseGI	GGATG	2 cut(s)	11, 154
BseLI	CCNNNNNNNGG	1 cut(s)	923
BseMII	CTCAG	4 cut(s)	201, 229, 338, 780
BseNI	ACTGG	3 cut(s)	323, 519, 854
BseSI	GKGCMC	1 cut(s)	861
BseXI	GCAGC	1 cut(s)	412
BshFI	GGCC	3 cut(s)	475, 661, 970
BshVI	ATCGAT	1 cut(s)	763
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	1 cut(s)	923
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	940
BsnI	GGCC	3 cut(s)	475, 661, 970
Bso31I	GGTCTC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	1014
Bsp1286I	GDGCHC	3 cut(s)	778, 854, 861
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	5 cut(s)	127, 163, 218, 760, 814
Bsp19I	CCATGG	1 cut(s)	259
BspANI	GGCC	3 cut(s)	475, 661, 970
BspCNI	CTCAG	4 cut(s)	200, 228, 339, 781
BspDI	ATCGAT	1 cut(s)	763
BspLI	GGNNCC	1 cut(s)	777
BspPI	GGATC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	1014
BspTNI	GGTCTC	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	3 cut(s)	323, 519, 854
BssECI	CCNNGG	3 cut(s)	259, 673, 971
BssMI	GATC	5 cut(s)	127, 163, 218, 760, 814
BssT1I	CCWWGG	3 cut(s)	259, 673, 971
Bst4CI	ACNGT	5 cut(s)	52, 309, 439, 843, 1001
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	978
BstBAI	YACGTR	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	1014
BstDEI	CTNAG	4 cut(s)	187, 215, 347, 789
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	11, 154
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	2 cut(s)	459, 796
BstKTI	GATC	5 cut(s)	130, 166, 221, 763, 817
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	5 cut(s)	127, 163, 218, 760, 814
BstSLI	GKGCMC	1 cut(s)	861
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	2 cut(s)	734, 1042
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	763
Bsu36I	CCTNAGG	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	3 cut(s)	475, 661, 970
BsuTUI	ATCGAT	1 cut(s)	763
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	11, 154
BtsIMutI	CAGTG	3 cut(s)	66, 330, 861
CfoI	GCGC	2 cut(s)	459, 796
ClaI	ATCGAT	1 cut(s)	763
Csp6I	GTAC	4 cut(s)	86, 290, 389, 979
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	5 cut(s)	248, 260, 385, 559, 651
CviQI	GTAC	4 cut(s)	86, 290, 389, 979
DdeI	CTNAG	4 cut(s)	187, 215, 347, 789
DpnI	GATC	5 cut(s)	129, 165, 220, 762, 816
DpnII	GATC	5 cut(s)	127, 163, 218, 760, 814
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	3 cut(s)	259, 673, 971
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	2 cut(s)	778, 854
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	789
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	3 cut(s)	259, 673, 971
EcoT38I	GRGCYC	2 cut(s)	778, 854
ErhI	CCWWGG	3 cut(s)	259, 673, 971
FaeI	CATG	5 cut(s)	251, 263, 388, 562, 654
FaqI	GGGAC	1 cut(s)	940
FatI	CATG	5 cut(s)	247, 259, 384, 558, 650
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	2 cut(s)	401, 1050
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	2 cut(s)	778, 854
Fsp4HI	GCNGC	2 cut(s)	401, 1050
FspBI	CTAG	3 cut(s)	83, 506, 630
GlaI	GCGC	2 cut(s)	458, 795
GluI	GCNGC	2 cut(s)	401, 1050
HaeII	RGCGCY	1 cut(s)	797
HaeIII	GGCC	3 cut(s)	475, 661, 970
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	2 cut(s)	459, 796
Hin1II	CATG	5 cut(s)	251, 263, 388, 562, 654
Hin6I	GCGC	2 cut(s)	457, 794
HinP1I	GCGC	2 cut(s)	457, 794
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	4 cut(s)	8, 114, 920, 962
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	4 cut(s)	169, 700, 824, 1013
Hpy166II	GTNNAC	2 cut(s)	358, 859
Hpy188I	TCNGA	6 cut(s)	190, 218, 348, 397, 694, 753
Hpy188III	TCNNGA	4 cut(s)	125, 506, 788, 847
Hpy8I	GTNNAC	2 cut(s)	358, 859
HpyAV	CCTTC	4 cut(s)	141, 185, 362, 731
HpyCH4III	ACNGT	5 cut(s)	52, 309, 439, 843, 1001
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	23, 55, 721, 859
HpyF3I	CTNAG	4 cut(s)	187, 215, 347, 789
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	5 cut(s)	251, 263, 388, 562, 654
HspAI	GCGC	2 cut(s)	457, 794
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	5 cut(s)	127, 163, 218, 760, 814
LmnI	GCTCC	1 cut(s)	781
Lsp1109I	GCAGC	1 cut(s)	412
MaeI	CTAG	3 cut(s)	83, 506, 630
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	525, 1001
MalI	GATC	5 cut(s)	129, 165, 220, 762, 816
MboI	GATC	5 cut(s)	127, 163, 218, 760, 814
MboII	GAAGA	6 cut(s)	212, 341, 596, 734, 1044, 1047
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	3 cut(s)	778, 854, 861
MluCI	AATT	5 cut(s)	275, 318, 512, 574, 746
MlyI	GAGTC	1 cut(s)	971
MnlI	CCTC	8 cut(s)	342, 558, 574, 619, 657, 784, 882, 962
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	3 cut(s)	636, 804, 936
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	5 cut(s)	127, 163, 218, 760, 814
NlaIII	CATG	5 cut(s)	251, 263, 388, 562, 654
NlaIV	GGNNCC	1 cut(s)	777
NmuCI	GTSAC	1 cut(s)	1001
NspV	TTCGAA	1 cut(s)	1014
PceI	AGGCCT	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	8, 114, 920
PkrI	GCNGC	2 cut(s)	402, 1051
PleI	GAGTC	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	970
Ppu21I	YACGTR	1 cut(s)	293
PshBI	ATTAAT	1 cut(s)	804
PspN4I	GGNNCC	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	4 cut(s)	87, 291, 390, 980
RsaNI	GTAC	4 cut(s)	86, 290, 389, 979
SaqAI	TTAA	3 cut(s)	636, 804, 936
SatI	GCNGC	2 cut(s)	401, 1050
Sau3AI	GATC	5 cut(s)	127, 163, 218, 760, 814
SchI	GAGTC	1 cut(s)	971
SduI	GDGCHC	3 cut(s)	778, 854, 861
SfuI	TTCGAA	1 cut(s)	1014
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	5 cut(s)	275, 318, 512, 574, 746
SseBI	AGGCCT	1 cut(s)	661
SspMI	CTAG	3 cut(s)	83, 506, 630
StuI	AGGCCT	1 cut(s)	661
StyI	CCWWGG	3 cut(s)	259, 673, 971
TaaI	ACNGT	5 cut(s)	52, 309, 439, 843, 1001
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	4 cut(s)	198, 763, 1014, 1044
TasI	AATT	5 cut(s)	275, 318, 512, 574, 746
TatI	WGTACW	1 cut(s)	978
TfiI	GAWTC	3 cut(s)	8, 114, 920
Tru1I	TTAA	3 cut(s)	636, 804, 936
Tru9I	TTAA	3 cut(s)	636, 804, 936
TscAI	CASTG	3 cut(s)	73, 330, 861
TseFI	GTSAC	1 cut(s)	1001
TseI	GCWGC	2 cut(s)	400, 1049
Tsp45I	GTSAC	1 cut(s)	1001
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	3 cut(s)	73, 330, 861
VneI	GTGCAC	1 cut(s)	857
VspI	ATTAAT	1 cut(s)	804
XapI	RAATTY	2 cut(s)	275, 574
XbaI	TCTAGA	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	3 cut(s)	83, 506, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.