Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Reverse (-)

6952397 .. 6953971

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCAGGCGAAGGAATACCGGAGAGATACCTCCAACCACCAGCCGTCGACGACAATGGTCAACATCTTAACGCTGCCGTGCCGGTGATGGATATTCCGGCCATCGATTTGAGTCTTCTCCTCTCTCCTTCTGATGACGGTCGAGAAGAGTTGAGTAAACTTCACTCGGCACTCTCTACATGGGGAGTTGTTCAGGTGATAAATCATGGAATTACAAAAGCGTTGCTCGACAAGATTTACAAGCTAACCAAGGAGTTCTGTGCACTTCCGTCCGAAGAGAAACAAAAGTACGCGAGAGAGATTGGTAGTATCCAAGGATATGGTAACGATATGATTCTGTGGGATGATCAAGTTCTTGATTGGATCGACCGTTTGTATATCACTACTTACCCTGAAGATCAGAGACAACTTAAGTTCTGGCCTGATGTCCCTGTCGGATTCAGGGAAACTTTACATGAATACACAATGAAGCAACATCTAGTGTTTAATCAAGTCTTTAAAGCGATGGCTATATCGTTGGAATTGGAAGAGAATTGCTTTCTAGACATGTGTGGAGAAAATGCTACGATGGATACAAGATTCAACATGTATCCTCCATGTCCGAGGCCGGACAAGGTTATTGGCGTTAGACCGCACGCTGATAAGTCGGCTTTCACTCTTCTCTTGCCTGACAAAAATGTCGAAGGGCTTCAGTTCCTTAAAGATGGGAAGTGGTATAAAGCTCCAGTTGTCGCTTCAGATACAATTCTGATCAATGTTGGAGATCAGATGGAGATAATGAGCAATGGGATATACAAGAGCCCGGTTCATAGAGTGGTGACTAATACAGAAAAAGAAAGGATATCTGTGGCAACGTTTTGCATTCCAGGTGCAGACAAAGAGATTCAGCCTGTTGATGGGCTTGTGTCTGAGGCAAGACCAAGATTGTATAAGCCAGTAAAAAACTATGTGGACCTCTTAAACAAGTACTATATACAGGGTCAAAGACCAATTGCAGCGTCATTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

349

Amino Acids

39.53

Weight (kDa)

5.39

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 155	5.2e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	205 - 302	6.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	332
AciI	CCGC	1 cut(s)	671
AclI	AACGTT	1 cut(s)	893
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	3 cut(s)	453, 713, 759
AfaI	GTAC	2 cut(s)	329, 1007
AfiI	CCNNNNNNNGG	2 cut(s)	34, 935
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	2 cut(s)	585, 624
AgsI	TTSAA	2 cut(s)	19, 622
AjnI	CCWGG	1 cut(s)	904
AluBI	AGCT	2 cut(s)	283, 761
AluI	AGCT	2 cut(s)	283, 761
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	436
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	3 cut(s)	138, 458, 644
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	3 cut(s)	41, 113, 1034
Asp700I	GAANNNNTTC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	991
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	3 cut(s)	136, 247, 868
AvaII	GGWCC	1 cut(s)	991
BaeGI	GKGCMC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	842
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	53, 100, 1046
BccI	CCATC	7 cut(s)	121, 149, 538, 601, 737, 802, 929
BceAI	ACGGC	2 cut(s)	68, 101
BciT130I	CCWGG	1 cut(s)	906
BciVI	GTATCC	3 cut(s)	359, 604, 639
BclI	TGATCA	2 cut(s)	385, 789
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	2 cut(s)	518, 581
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	3 cut(s)	359, 604, 639
BisI	GCNGC	3 cut(s)	42, 114, 1035
BlsI	GCNGC	3 cut(s)	43, 115, 1036
BmcAI	AGTACT	1 cut(s)	1007
Bme1390I	CCNGG	2 cut(s)	842, 906
Bme18I	GGWCC	1 cut(s)	991
BmgT120I	GGNCC	1 cut(s)	991
BmrFI	CCNGG	2 cut(s)	842, 906
BoxI	GACNNNNGTC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	747
BpuMI	CCSGG	1 cut(s)	842
Bsa29I	ATCGAT	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	288, 352, 641
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 935
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	764, 974
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	906
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	288, 352, 641
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	34, 935
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	939
BseNI	ACTGG	2 cut(s)	764, 974
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	53, 100, 1046
BsgI	GTGCAG	1 cut(s)	930
Bsh1236I	CGCG	1 cut(s)	332
Bsh1285I	CGRYCG	2 cut(s)	181, 409
BshFI	GGCC	3 cut(s)	140, 460, 646
BshVI	ATCGAT	1 cut(s)	144
BsiEI	CGRYCG	2 cut(s)	181, 409
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	5 cut(s)	59, 122, 137, 647, 842
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	34, 935
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	3 cut(s)	140, 460, 646
Bsp1286I	GDGCHC	2 cut(s)	304, 842
Bsp143I	GATC	6 cut(s)	385, 402, 436, 789, 802, 1044
BspACI	CCGC	1 cut(s)	671
BspANI	GGCC	3 cut(s)	140, 460, 646
BspCNI	CTCAG	1 cut(s)	940
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	332
BspPI	GGATC	1 cut(s)	410
BspTI	CTTAAG	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	829
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	764, 974
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	288, 352, 641
BssMI	GATC	6 cut(s)	385, 402, 436, 789, 802, 1044
BssT1I	CCWWGG	2 cut(s)	288, 352
Bst2UI	CCWGG	1 cut(s)	906
Bst4CI	ACNGT	3 cut(s)	25, 179, 410
Bst6I	CTCTTC	4 cut(s)	180, 309, 561, 702
BstAFI	CTTAAG	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	46, 675
BstDEI	CTNAG	1 cut(s)	948
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	6 cut(s)	388, 405, 439, 792, 805, 1047
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	6 cut(s)	385, 402, 436, 789, 802, 1044
BstMCI	CGRYCG	2 cut(s)	181, 409
BstNI	CCWGG	1 cut(s)	906
BstNSI	RCATGY	2 cut(s)	589, 628
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	840, 904
BstSLI	GKGCMC	1 cut(s)	304
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	53, 100, 1046
BstV2I	GAAGAC	1 cut(s)	146
BstXI	CCANNNNNNTGG	1 cut(s)	359
Bsu15I	ATCGAT	1 cut(s)	144
BsuI	GTATCC	3 cut(s)	359, 604, 639
BsuRI	GGCC	3 cut(s)	140, 460, 646
BsuTUI	ATCGAT	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	557
BtsCI	GGATG	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	46, 675
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	991
ClaI	ATCGAT	1 cut(s)	144
CseI	GACGC	1 cut(s)	1026
Csp6I	GTAC	2 cut(s)	328, 1006
CviAII	CATG	6 cut(s)	219, 245, 494, 586, 625, 636
CviQI	GTAC	2 cut(s)	328, 1006
DdeI	CTNAG	1 cut(s)	948
DpnI	GATC	6 cut(s)	387, 404, 438, 791, 804, 1046
DpnII	GATC	6 cut(s)	385, 402, 436, 789, 802, 1044
DraI	TTTAAA	1 cut(s)	538
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	4 cut(s)	180, 309, 561, 702
EarI	CTCTTC	4 cut(s)	180, 309, 561, 702
Eco130I	CCWWGG	2 cut(s)	288, 352
Eco24I	GRGCYC	1 cut(s)	842
Eco32I	GATATC	1 cut(s)	882
Eco47I	GGWCC	1 cut(s)	991
Eco57I	CTGAAG	3 cut(s)	453, 713, 759
EcoRII	CCWGG	1 cut(s)	904
EcoRV	GATATC	1 cut(s)	882
EcoT14I	CCWWGG	2 cut(s)	288, 352
EcoT38I	GRGCYC	1 cut(s)	842
ErhI	CCWWGG	2 cut(s)	288, 352
FaeI	CATG	6 cut(s)	222, 248, 497, 589, 628, 639
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	218, 244, 493, 585, 624, 635
FbaI	TGATCA	2 cut(s)	385, 789
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	42, 114, 1035
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	3 cut(s)	42, 114, 1035
FspBI	CTAG	2 cut(s)	518, 581
GluI	GCNGC	3 cut(s)	42, 114, 1035
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	140, 460, 646
HapII	CCGG	5 cut(s)	59, 122, 137, 647, 842
HgaI	GACGC	1 cut(s)	1026
Hin1II	CATG	6 cut(s)	222, 248, 497, 589, 628, 639
HincII	GTYRAC	2 cut(s)	88, 101
HindII	GTYRAC	2 cut(s)	88, 101
HinfI	GANTC	5 cut(s)	151, 373, 477, 618, 922
HpaII	CCGG	5 cut(s)	59, 122, 137, 647, 842
HphI	GGTGA	3 cut(s)	136, 247, 868
Hpy166II	GTNNAC	5 cut(s)	88, 101, 197, 302, 991
Hpy188III	TCNNGA	4 cut(s)	19, 182, 395, 581
Hpy8I	GTNNAC	5 cut(s)	88, 101, 197, 302, 991
Hpy99I	CGWCG	2 cut(s)	89, 92
HpyAV	CCTTC	3 cut(s)	44, 177, 716
HpyCH4III	ACNGT	3 cut(s)	25, 179, 410
HpyCH4IV	ACGT	1 cut(s)	893
HpyCH4V	TGCA	5 cut(s)	41, 302, 900, 911, 1034
HpyF3I	CTNAG	1 cut(s)	948
HpySE526I	ACGT	1 cut(s)	893
Hsp92II	CATG	6 cut(s)	222, 248, 497, 589, 628, 639
Ksp22I	TGATCA	2 cut(s)	385, 789
Kzo9I	GATC	6 cut(s)	385, 402, 436, 789, 802, 1044
LmnI	GCTCC	1 cut(s)	766
Lsp1109I	GCAGC	3 cut(s)	53, 100, 1046
MaeI	CTAG	2 cut(s)	518, 581
MaeII	ACGT	1 cut(s)	893
MaeIII	GTNAC	2 cut(s)	362, 856
MalI	GATC	6 cut(s)	387, 404, 438, 791, 804, 1046
MboI	GATC	6 cut(s)	385, 402, 436, 789, 802, 1044
MboII	GAAGA	6 cut(s)	146, 197, 326, 446, 578, 689
MfeI	CAATTG	1 cut(s)	1029
MhlI	GDGCHC	2 cut(s)	304, 842
MluCI	AATT	5 cut(s)	249, 560, 571, 783, 1029
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	4 cut(s)	97, 454, 537, 778
MnlI	CCTC	7 cut(s)	25, 80, 170, 636, 642, 943, 1004
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	6 cut(s)	108, 450, 525, 537, 738, 998
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	5 cut(s)	59, 122, 137, 647, 842
MspR9I	CCNGG	2 cut(s)	842, 906
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	1 cut(s)	906
MvnI	CGCG	1 cut(s)	332
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	6 cut(s)	385, 402, 436, 789, 802, 1044
NlaIII	CATG	6 cut(s)	222, 248, 497, 589, 628, 639
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	856
NspI	RCATGY	2 cut(s)	589, 628
PciI	ACATGT	2 cut(s)	585, 624
PctI	GAATGC	1 cut(s)	900
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	4 cut(s)	373, 477, 618, 922
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	43, 115, 1036
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PscI	ACATGT	2 cut(s)	585, 624
PshAI	GACNNNNGTC	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	893
Psp6I	CCWGG	1 cut(s)	904
PspGI	CCWGG	1 cut(s)	904
PspPI	GGNCC	1 cut(s)	991
RsaI	GTAC	2 cut(s)	329, 1007
RsaNI	GTAC	2 cut(s)	328, 1006
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	6 cut(s)	108, 450, 525, 537, 738, 998
SatI	GCNGC	3 cut(s)	42, 114, 1035
Sau3AI	GATC	6 cut(s)	385, 402, 436, 789, 802, 1044
Sau96I	GGNCC	1 cut(s)	991
ScaI	AGTACT	1 cut(s)	1007
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	842, 906
SduI	GDGCHC	2 cut(s)	304, 842
SetI	ASST	9 cut(s)	36, 72, 237, 285, 657, 763, 896, 910, 996
SgrDI	CGTCGACG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	991
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	5 cut(s)	249, 560, 571, 783, 1029
SsiI	CCGC	1 cut(s)	671
SspMI	CTAG	2 cut(s)	518, 581
StyD4I	CCNGG	2 cut(s)	840, 904
StyI	CCWWGG	2 cut(s)	288, 352
TaaI	ACNGT	3 cut(s)	25, 179, 410
TaiI	ACGT	1 cut(s)	896
TaqI	TCGA	6 cut(s)	87, 144, 181, 267, 405, 720
TasI	AATT	5 cut(s)	249, 560, 571, 783, 1029
TatI	WGTACW	1 cut(s)	1005
TfiI	GAWTC	4 cut(s)	373, 477, 618, 922
Tru1I	TTAA	6 cut(s)	108, 450, 525, 537, 738, 998
Tru9I	TTAA	6 cut(s)	108, 450, 525, 537, 738, 998
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	3 cut(s)	41, 113, 1034
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	3 cut(s)	510, 521, 836
TspGWI	ACGGA	1 cut(s)	297
Van91I	CCANNNNNTGG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	449
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	991
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	2 cut(s)	589, 628
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	2 cut(s)	518, 581
ZrmI	AGTACT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.