Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1434356 .. 1436539

Gene Structure 2184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1020000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGTTATTAGGTTCCAAAACTGTCCAGGAAGTGCTCATCCAAGGGGAACAGGTGCCAGAGAAATATATCCATAAAGTTGAAGATGGTGGAGTCCAAGTCCCAGATGCTTCTGCTGCCCAGTTGATGGATGTTCCAGTTATTGATCTTGCTTTCCTCGCAGCTTCTTCAATCTCTGCCGATGAACTTGAGAAGCTCAGATCAGCTCTTGCCACATGGGGTTGCTTCCAGGTAATAAACCACGGTATGTCGCCGGAATTCCTAGACGAGGTCCGAGAGATTGCAAAGCAATTTTTTGCACTTCCAGTGGAAGATAAGAAGAAGTACTTGAGACAAGTCAACGACATTCAAGGATATGGAAACGACATGGTTTTTTCAGAGCAACAAACACTGGATTGGAGTGATAGACTATACCTTTCGGTGTATCCACAAGACAACCGTAAGCTCAACTTGTGGCCTGAAAACCCCAAATCTTTTAGGCGGACTTTAGACCAATATACCACGGAATTGCAAGTGGTAACAAAAACAGTCCTCAAGGCCATGGCAAGGTCATTGGATTTGGAGGACAATTGCTTTTCCGACCTGTATGGGGGAGAACAAGGGAAAATGGACATCAGATTTAACTTTTATCCTCCATGTCCAAGGCCTGATCTCGTCCTTGGTGTCAAAGCACACGCAGACGGAACCCTAATCACCCTTCTCTTGCAAGACAAGGAAGTTGAAGGTCTTCAATTTCTCAAAGGTGACGAGTGGTTTCGAGCTCCCATTGTTCCTGATGCGCTTCTCATCAACGTTGGTGATCAAGTAGAGATACTGAGCAATGGAATATTCAAGAGCCCTGTACACAAGGTGGTGACAAATTCCGACAAGGAGAGGATATCGGTGGCGGCCTTCTGCATACCAGAGTCGGATAAAGAGATTGAACCCTTTGAAAGGTTGGTCGACGAGTCAAGGCCAAGATTGTACAAGAAGGTGAAAAATTATGTTGGCATCTATTTCGAATACTATCAGCAAGGGAGGAGACCAATGGAAGCAGCAATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

349

Amino Acids

39.65

Weight (kDa)

4.91

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 155	5.4e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	205 - 300	2.4e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	942
AciI	CCGC	2 cut(s)	481, 887
AclI	AACGTT	1 cut(s)	792
AcsI	RAATTY	2 cut(s)	257, 859
AdeI	CACNNNGTG	1 cut(s)	850
AfaI	GTAC	3 cut(s)	326, 843, 965
AfiI	CCNNNNNNNGG	5 cut(s)	127, 268, 546, 589, 933
AgsI	TTSAA	8 cut(s)	83, 171, 350, 722, 731, 832, 923, 932
AjnI	CCWGG	2 cut(s)	27, 228
AluBI	AGCT	5 cut(s)	164, 196, 206, 445, 761
AluI	AGCT	5 cut(s)	164, 196, 206, 445, 761
Alw21I	GWGCWC	2 cut(s)	39, 763
Alw26I	GTCTC	2 cut(s)	325, 1015
AoxI	GGCC	5 cut(s)	455, 537, 644, 888, 953
ApeKI	GCWGC	3 cut(s)	116, 161, 1034
ApoI	RAATTY	2 cut(s)	257, 859
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	5 cut(s)	685, 755, 809, 865, 985
AsuII	TTCGAA	1 cut(s)	999
AvaII	GGWCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	763, 839
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	2 cut(s)	39, 763
BbvI	GCAGC	2 cut(s)	103, 173
BccI	CCATC	2 cut(s)	80, 121
BcgI	CGANNNNNNTGC	2 cut(s)	979, 1013
BciT130I	CCWGG	2 cut(s)	29, 230
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	325, 1015
BfaI	CTAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	4 cut(s)	117, 162, 888, 1035
BlsI	GCNGC	4 cut(s)	118, 163, 889, 1036
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	29, 230
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	16, 57, 685
BmrFI	CCNGG	2 cut(s)	29, 230
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	3 cut(s)	97, 766, 999
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	719
Bpu14I	TTCGAA	1 cut(s)	999
BpuEI	CTTGAG	3 cut(s)	209, 349, 518
BsaI	GGTCTC	1 cut(s)	1015
BsaJI	CCNNGG	6 cut(s)	43, 241, 501, 540, 641, 658
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 268, 546, 589, 933
Bse1I	ACTGG	4 cut(s)	121, 137, 305, 396
Bse3DI	GCAATG	1 cut(s)	826
BseBI	CCWGG	2 cut(s)	29, 230
BseDI	CCNNGG	6 cut(s)	43, 241, 501, 540, 641, 658
BseGI	GGATG	2 cut(s)	39, 136
BseLI	CCNNNNNNNGG	5 cut(s)	127, 268, 546, 589, 933
BseMI	GCAATG	1 cut(s)	826
BseMII	CTCAG	2 cut(s)	211, 806
BseNI	ACTGG	4 cut(s)	121, 137, 305, 396
BseRI	GAGGAG	1 cut(s)	1033
BseXI	GCAGC	2 cut(s)	103, 173
BshFI	GGCC	5 cut(s)	457, 539, 646, 890, 955
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	39, 763
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	5 cut(s)	127, 268, 546, 589, 933
BsmAI	GTCTC	2 cut(s)	325, 1015
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	5 cut(s)	457, 539, 646, 890, 955
Bso31I	GGTCTC	1 cut(s)	1015
Bsp119I	TTCGAA	1 cut(s)	999
Bsp1286I	GDGCHC	3 cut(s)	39, 763, 839
Bsp1407I	TGTACA	2 cut(s)	841, 963
Bsp143I	GATC	4 cut(s)	145, 200, 649, 799
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	2 cut(s)	481, 887
BspANI	GGCC	5 cut(s)	457, 539, 646, 890, 955
BspCNI	CTCAG	2 cut(s)	210, 807
BspLI	GGNNCC	3 cut(s)	16, 57, 685
BspT104I	TTCGAA	1 cut(s)	999
BspT107I	GGYRCC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	1015
BsrDI	GCAATG	1 cut(s)	826
BsrGI	TGTACA	2 cut(s)	841, 963
BsrI	ACTGG	4 cut(s)	121, 137, 305, 396
BssECI	CCNNGG	6 cut(s)	43, 241, 501, 540, 641, 658
BssMI	GATC	4 cut(s)	145, 200, 649, 799
BssT1I	CCWWGG	4 cut(s)	43, 540, 641, 658
Bst2UI	CCWGG	2 cut(s)	29, 230
Bst4CI	ACNGT	4 cut(s)	25, 245, 440, 529
BstAUI	TGTACA	2 cut(s)	841, 963
BstBI	TTCGAA	1 cut(s)	999
BstDEI	CTNAG	2 cut(s)	197, 815
BstDSI	CCRYGG	3 cut(s)	241, 501, 540
BstENI	CCTNNNNNAGG	2 cut(s)	266, 931
BstF5I	GGATG	2 cut(s)	39, 136
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	4 cut(s)	148, 203, 652, 802
BstMAI	GTCTC	2 cut(s)	325, 1015
BstMBI	GATC	4 cut(s)	145, 200, 649, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 158
BstNI	CCWGG	2 cut(s)	29, 230
BstSCI	CCNGG	2 cut(s)	27, 228
BstV1I	GCAGC	2 cut(s)	103, 173
BstV2I	GAAGAC	1 cut(s)	719
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	5 cut(s)	457, 539, 646, 890, 955
BtgI	CCRYGG	3 cut(s)	241, 501, 540
BtsCI	GGATG	2 cut(s)	39, 136
BtsIMutI	CAGTG	2 cut(s)	312, 389
CfoI	GCGC	1 cut(s)	781
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	325, 842, 964
CviAII	CATG	4 cut(s)	216, 367, 541, 636
CviQI	GTAC	3 cut(s)	325, 842, 964
DdeI	CTNAG	2 cut(s)	197, 815
DpnI	GATC	4 cut(s)	147, 202, 651, 801
DpnII	GATC	4 cut(s)	145, 200, 649, 799
DraIII	CACNNNGTG	1 cut(s)	850
EciI	GGCGGA	1 cut(s)	496
Ecl136II	GAGCTC	1 cut(s)	761
Eco130I	CCWWGG	4 cut(s)	43, 540, 641, 658
Eco147I	AGGCCT	1 cut(s)	646
Eco24I	GRGCYC	2 cut(s)	763, 839
Eco31I	GGTCTC	1 cut(s)	1015
Eco32I	GATATC	1 cut(s)	879
Eco47I	GGWCC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	761
EcoICRI	GAGCTC	1 cut(s)	761
EcoNI	CCTNNNNNAGG	2 cut(s)	266, 931
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	27, 228
EcoRV	GATATC	1 cut(s)	879
EcoT14I	CCWWGG	4 cut(s)	43, 540, 641, 658
EcoT38I	GRGCYC	2 cut(s)	763, 839
ErhI	CCWWGG	4 cut(s)	43, 540, 641, 658
FaeI	CATG	4 cut(s)	219, 370, 544, 639
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 434, 466
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	4 cut(s)	215, 366, 540, 635
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	4 cut(s)	117, 162, 888, 1035
FokI	GGATG	2 cut(s)	26, 143
FriOI	GRGCYC	2 cut(s)	763, 839
Fsp4HI	GCNGC	4 cut(s)	117, 162, 888, 1035
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	4 cut(s)	117, 162, 888, 1035
HaeIII	GGCC	5 cut(s)	457, 539, 646, 890, 955
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	4 cut(s)	219, 370, 544, 639
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HincII	GTYRAC	2 cut(s)	340, 943
HindII	GTYRAC	2 cut(s)	340, 943
HinfI	GANTC	3 cut(s)	93, 905, 947
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	5 cut(s)	685, 755, 809, 865, 985
Hpy166II	GTNNAC	3 cut(s)	340, 844, 943
Hpy188I	TCNGA	7 cut(s)	200, 275, 379, 580, 617, 865, 910
Hpy188III	TCNNGA	2 cut(s)	773, 832
Hpy8I	GTNNAC	3 cut(s)	340, 844, 943
Hpy99I	CGWCG	1 cut(s)	947
HpyAV	CCTTC	4 cut(s)	707, 716, 901, 964
HpyCH4III	ACNGT	4 cut(s)	25, 245, 440, 529
HpyCH4IV	ACGT	1 cut(s)	792
HpyCH4V	TGCA	5 cut(s)	284, 299, 511, 706, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 158
HpyF3I	CTNAG	2 cut(s)	197, 815
HpySE526I	ACGT	1 cut(s)	792
Hsp92II	CATG	4 cut(s)	219, 370, 544, 639
HspAI	GCGC	1 cut(s)	779
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	4 cut(s)	145, 200, 649, 799
LmnI	GCTCC	1 cut(s)	766
Lsp1109I	GCAGC	2 cut(s)	103, 173
LweI	GCATC	3 cut(s)	97, 766, 999
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	3 cut(s)	517, 743, 853
MalI	GATC	4 cut(s)	147, 202, 651, 801
MboI	GATC	4 cut(s)	145, 200, 649, 799
MboII	GAAGA	5 cut(s)	95, 159, 323, 331, 719
MfeI	CAATTG	1 cut(s)	568
MhlI	GDGCHC	3 cut(s)	39, 763, 839
MluCI	AATT	8 cut(s)	257, 290, 506, 568, 731, 859, 979, 1038
MlyI	GAGTC	3 cut(s)	102, 914, 956
MmeI	TCCRAC	3 cut(s)	603, 888, 888
MnlI	CCTC	7 cut(s)	167, 262, 542, 556, 642, 867, 1011
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	1 cut(s)	621
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	29, 230
MunI	CAATTG	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	29, 230
MwoI	GCNNNNNNNGC	2 cut(s)	116, 158
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	4 cut(s)	145, 200, 649, 799
NlaIII	CATG	4 cut(s)	219, 370, 544, 639
NlaIV	GGNNCC	3 cut(s)	16, 57, 685
NmuCI	GTSAC	2 cut(s)	743, 853
NspV	TTCGAA	1 cut(s)	999
PceI	AGGCCT	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	726
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	118, 163, 889, 1036
PleI	GAGTC	3 cut(s)	101, 913, 955
PpsI	GAGTC	3 cut(s)	101, 913, 955
Psp124BI	GAGCTC	1 cut(s)	763
Psp1406I	AACGTT	1 cut(s)	792
Psp6I	CCWGG	2 cut(s)	27, 228
PspGI	CCWGG	2 cut(s)	27, 228
PspN4I	GGNNCC	3 cut(s)	16, 57, 685
PspPI	GGNCC	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	3 cut(s)	326, 843, 965
RsaNI	GTAC	3 cut(s)	325, 842, 964
SacI	GAGCTC	1 cut(s)	763
SalI	GTCGAC	1 cut(s)	941
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	4 cut(s)	117, 162, 888, 1035
Sau3AI	GATC	4 cut(s)	145, 200, 649, 799
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	3 cut(s)	102, 914, 956
ScrFI	CCNGG	2 cut(s)	29, 230
SduI	GDGCHC	3 cut(s)	39, 763, 839
SfaNI	GCATC	3 cut(s)	97, 766, 999
SfuI	TTCGAA	1 cut(s)	999
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	3 cut(s)	188, 328, 533
SmoI	CTYRAG	3 cut(s)	188, 328, 533
Sse9I	AATT	8 cut(s)	257, 290, 506, 568, 731, 859, 979, 1038
SseBI	AGGCCT	1 cut(s)	646
SsiI	CCGC	2 cut(s)	481, 887
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	763
StuI	AGGCCT	1 cut(s)	646
StyD4I	CCNGG	2 cut(s)	27, 228
StyI	CCWWGG	4 cut(s)	43, 540, 641, 658
TaaI	ACNGT	4 cut(s)	25, 245, 440, 529
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	3 cut(s)	757, 942, 999
TasI	AATT	8 cut(s)	257, 290, 506, 568, 731, 859, 979, 1038
TatI	WGTACW	3 cut(s)	324, 841, 963
TauI	GCSGC	1 cut(s)	890
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	2 cut(s)	312, 396
TseFI	GTSAC	2 cut(s)	743, 853
TseI	GCWGC	3 cut(s)	116, 161, 1034
Tsp45I	GTSAC	2 cut(s)	743, 853
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	2 cut(s)	518, 696
TspRI	CASTG	2 cut(s)	312, 396
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	271
XagI	CCTNNNNNAGG	2 cut(s)	266, 931
XapI	RAATTY	2 cut(s)	257, 859
XmiI	GTMKAC	1 cut(s)	942
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.