Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Reverse (-)

90534203 .. 90534973

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTGTATCTTCCACTCCTGCCAAGGTCGAGTTATTAGCAACCAAAACTGTGCAAGAGCTACTCACTGAAGGAGAAGTACTGGTGCCACAGAAATATATTCTCAAAGATGGAATCCCACTTCCAAATGCTTCTGTTGAGTTGATGGATGTTCCAGTTATTGATCTTGGTCTCCTCGCACCTTCCTCATTCAGTATGGAAGAGTTTGACAAACTTAGATCAGCTCTTACCACATGGGGTTGCTTTCAGGTAATAAACCATGGAATGACTCCTGAATTCCTTGACAAAGTCCGTGAAATCACGAAACAATTTTTTGCACTTCCACTGGAAGAGAAGCAGAAATATTTGAGGCCAGTCGACAACATTGAAGGATATGGGAATGACATGGTTTTTTCAGAGCAGCAAACACTTGATTGGACTGATAGACTATACCTTACTGTCTACCCACCAGACAAGCGCAAGCTCAAGTTTTGGCCTGAAAATCCCAAATCTTTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

166

Amino Acids

19.04

Weight (kDa)

5.0

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 161	9e-31	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AccI	GTMKAC	2 cut(s)	357, 441
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	368
AluBI	AGCT	3 cut(s)	61, 224, 463
AluI	AGCT	3 cut(s)	61, 224, 463
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	350, 473
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	459
BanI	GGYRCC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	104, 139
BcoDI	GTCTC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
BmcAI	AGTACT	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	24, 259
Bse1I	ACTGG	4 cut(s)	87, 155, 330, 353
BseDI	CCNNGG	2 cut(s)	24, 259
BseGI	GGATG	1 cut(s)	154
BseNI	ACTGG	4 cut(s)	87, 155, 330, 353
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	412
BshFI	GGCC	2 cut(s)	352, 475
BshNI	GGYRCC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	352, 475
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	163, 218
Bsp19I	CCATGG	1 cut(s)	259
BspANI	GGCC	2 cut(s)	352, 475
BspLI	GGNNCC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	4 cut(s)	87, 155, 330, 353
BssECI	CCNNGG	2 cut(s)	24, 259
BssMI	GATC	2 cut(s)	163, 218
BssT1I	CCWWGG	2 cut(s)	24, 259
Bst4CI	ACNGT	2 cut(s)	52, 439
Bst6I	CTCTTC	2 cut(s)	195, 324
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	166, 221
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	163, 218
BstV1I	GCAGC	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	352, 475
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	66, 323
Cac8I	GCNNGC	1 cut(s)	461
CfoI	GCGC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	3 cut(s)	234, 260, 385
CviJI	RGCY	6 cut(s)	5, 61, 224, 352, 463, 475
CviKI_1	RGCY	6 cut(s)	5, 61, 224, 352, 463, 475
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	2 cut(s)	165, 220
DpnII	GATC	2 cut(s)	163, 218
Eam1104I	CTCTTC	2 cut(s)	195, 324
EarI	CTCTTC	2 cut(s)	195, 324
Eco130I	CCWWGG	2 cut(s)	24, 259
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	24, 259
ErhI	CCWWGG	2 cut(s)	24, 259
FaeI	CATG	3 cut(s)	237, 263, 388
FaiI	YATR	7 cut(s)	99, 197, 235, 261, 375, 386, 430
FatI	CATG	3 cut(s)	233, 259, 384
FblI	GTMKAC	2 cut(s)	357, 441
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	401
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	352, 475
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	237, 263, 388
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	2 cut(s)	114, 268
Hpy166II	GTNNAC	2 cut(s)	358, 442
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	2 cut(s)	272, 301
Hpy8I	GTNNAC	2 cut(s)	358, 442
HpyAV	CCTTC	3 cut(s)	65, 192, 362
HpyCH4III	ACNGT	2 cut(s)	52, 439
HpyCH4V	TGCA	2 cut(s)	55, 317
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	237, 263, 388
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	163, 218
LpnPI	CCDG	9 cut(s)	33, 68, 168, 233, 285, 311, 366, 462, 489
Lsp1109I	GCAGC	1 cut(s)	412
MalI	GATC	2 cut(s)	165, 220
MboI	GATC	2 cut(s)	163, 218
MboII	GAAGA	3 cut(s)	3, 212, 341
MluCI	AATT	2 cut(s)	275, 308
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	3 cut(s)	185, 196, 342
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	163, 218
NlaIII	CATG	3 cut(s)	237, 263, 388
NlaIV	GGNNCC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	402
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	356
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	2 cut(s)	163, 218
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	1 cut(s)	262
SetI	ASST	8 cut(s)	30, 63, 184, 226, 252, 435, 465, 500
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	275, 308
SspI	AATATT	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	24, 259
TaaI	ACNGT	2 cut(s)	52, 439
TaqI	TCGA	2 cut(s)	30, 357
TasI	AATT	2 cut(s)	275, 308
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	114
TscAI	CASTG	2 cut(s)	73, 330
TseI	GCWGC	1 cut(s)	400
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	73, 330
Tth111I	GACNNNGTC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	275
XmiI	GTMKAC	2 cut(s)	357, 441
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.