Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

17034447 .. 17035091

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1108700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGTTATTAGGATCCAAAACTGTCCAGGAAGTGCTCATCCAAATGGAACAGGTGCCAGAGAAATATATCCATAAAGTTGAAGATGGTGGAGTCCAAGTTCCAGATGCTTCTGCTGCCCAGTTGATGGATGTTCCAGTTATTGATCTTGCTGTCCTCGCAGCTTCTTCAATCTCTGTCAATGAACTTGAGAAGCTCAGATCATCTCTTGCCACATGGGGTTGCTTCCAGGTAATAAACCACGGTATGTCGCCGGAATTCCTAGACGAGGTCCGAGAAATTGCAAAGCAATTTTTTGCACTTCCAATGGAAGATAAGAAGAAGTACTTGAGACAAGTTAACGACATTCAAGGATATGGAAACGACATGGTTTTTTTTTCAGAGCAACAAACACTAGAGTGGAGTGATAGACTATACCTTTCGGTGTATCCACAAGACAACCGTAAGCTCAACTTGTGGCTTGAAAACCCGAAATCTTTTAGGCTTTGCCATTGCAGGGCAACAACTGGCATGCCGAAAGCACGAACCAGAACAGATGGTATGGCGTCGGTGCCAACGATGCCTCGCAGTTTTCATATGGTACTGCTGTGTGCATTGAGCACGCCCTCGACTGGGGCTCCGGTAGTGGAGAGATGTCATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

215

Amino Acids

24.14

Weight (kDa)

5.76

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 155	8.5e-27	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	55, 550
AccB7I	CCANNNNNTGG	1 cut(s)	127
AclWI	GGATC	2 cut(s)	9, 22
AcsI	RAATTY	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	2 cut(s)	326, 582
AfiI	CCNNNNNNNGG	5 cut(s)	127, 268, 496, 611, 612
AgsI	TTSAA	4 cut(s)	83, 171, 350, 464
AjnI	CCWGG	2 cut(s)	27, 228
AleI	CACNNNNGTG	1 cut(s)	397
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	3 cut(s)	164, 196, 448
AluI	AGCT	3 cut(s)	164, 196, 448
Alw21I	GWGCWC	2 cut(s)	39, 602
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	9, 22
ApeKI	GCWGC	2 cut(s)	116, 161
ApoI	RAATTY	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	271
BaeI	ACNNNNGTAYC	2 cut(s)	572, 605
BamHI	GGATCC	1 cut(s)	14
BanI	GGYRCC	2 cut(s)	55, 550
BanII	GRGCYC	1 cut(s)	619
Bbv12I	GWGCWC	2 cut(s)	39, 602
BbvI	GCAGC	2 cut(s)	103, 173
BccI	CCATC	3 cut(s)	80, 121, 530
BciT130I	CCWGG	2 cut(s)	29, 230
BciVI	GTATCC	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	263, 395
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	2 cut(s)	117, 162
BlsI	GCNGC	2 cut(s)	118, 163
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	29, 230
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	4 cut(s)	16, 57, 552, 618
BmrFI	CCNGG	2 cut(s)	29, 230
BmrI	ACTGGG	2 cut(s)	115, 621
BmsI	GCATC	2 cut(s)	97, 549
BmuI	ACTGGG	2 cut(s)	115, 621
BpuEI	CTTGAG	2 cut(s)	209, 349
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	241
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 601, 631
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 268, 496, 611, 612
Bse1I	ACTGG	4 cut(s)	121, 137, 511, 616
Bse3DI	GCAATG	1 cut(s)	490
BseBI	CCWGG	2 cut(s)	29, 230
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	39, 136
BseLI	CCNNNNNNNGG	5 cut(s)	127, 268, 496, 611, 612
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	211
BseNI	ACTGG	4 cut(s)	121, 137, 511, 616
BseXI	GCAGC	2 cut(s)	103, 173
BshNI	GGYRCC	2 cut(s)	55, 550
BsiHKAI	GWGCWC	2 cut(s)	39, 602
BsiSI	CCGG	2 cut(s)	254, 620
BslI	CCNNNNNNNGG	5 cut(s)	127, 268, 496, 611, 612
BsmAI	GTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	3 cut(s)	39, 602, 619
Bsp143I	GATC	3 cut(s)	14, 145, 200
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	16, 57, 552, 618
BspPI	GGATC	2 cut(s)	9, 22
BspT107I	GGYRCC	2 cut(s)	55, 550
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	4 cut(s)	121, 137, 511, 616
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	14, 145, 200
BssNI	GRCGYC	1 cut(s)	545
Bst2UI	CCWGG	2 cut(s)	29, 230
Bst4CI	ACNGT	3 cut(s)	25, 245, 443
BstACI	GRCGYC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	512, 602
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	241
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	39, 136
BstKTI	GATC	3 cut(s)	17, 148, 203
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	14, 145, 200
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 158, 559
BstNI	CCWGG	2 cut(s)	29, 230
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	27, 228
BstV1I	GCAGC	2 cut(s)	103, 173
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	39, 136
Cac8I	GCNNGC	2 cut(s)	512, 602
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	325, 581
CviAII	CATG	3 cut(s)	216, 367, 511
CviJI	RGCY	6 cut(s)	164, 196, 448, 460, 484, 617
CviKI_1	RGCY	6 cut(s)	164, 196, 448, 460, 484, 617
CviQI	GTAC	2 cut(s)	325, 581
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	3 cut(s)	16, 147, 202
DpnII	GATC	3 cut(s)	14, 145, 200
Eco24I	GRGCYC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	27, 228
EcoT38I	GRGCYC	1 cut(s)	619
FaeI	CATG	3 cut(s)	219, 370, 514
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 437, 469
FatI	CATG	3 cut(s)	215, 366, 510
FauNDI	CATATG	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	117, 162
FokI	GGATG	2 cut(s)	26, 143
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	2 cut(s)	117, 162
FspBI	CTAG	2 cut(s)	263, 395
GluI	GCNGC	2 cut(s)	117, 162
HapII	CCGG	2 cut(s)	254, 620
HgaI	GACGC	1 cut(s)	534
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	3 cut(s)	219, 370, 514
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	1 cut(s)	93
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	254, 620
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	3 cut(s)	200, 275, 382
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	550
HpyCH4III	ACNGT	3 cut(s)	25, 245, 443
HpyCH4V	TGCA	4 cut(s)	284, 299, 495, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 158, 559
HpyF3I	CTNAG	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	3 cut(s)	219, 370, 514
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	14, 145, 200
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	103, 173
LweI	GCATC	2 cut(s)	97, 549
MaeI	CTAG	2 cut(s)	263, 395
MalI	GATC	3 cut(s)	16, 147, 202
MboI	GATC	3 cut(s)	14, 145, 200
MboII	GAAGA	4 cut(s)	95, 159, 323, 331
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	3 cut(s)	39, 602, 619
MluCI	AATT	3 cut(s)	257, 279, 290
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	167, 262, 573, 616
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	44, 397
MspI	CCGG	2 cut(s)	254, 620
MspR9I	CCNGG	2 cut(s)	29, 230
MvaI	CCWGG	2 cut(s)	29, 230
MwoI	GCNNNNNNNGC	3 cut(s)	116, 158, 559
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	3 cut(s)	14, 145, 200
NlaIII	CATG	3 cut(s)	219, 370, 514
NlaIV	GGNNCC	4 cut(s)	16, 57, 552, 618
NspI	RCATGY	1 cut(s)	514
OliI	CACNNNNGTG	1 cut(s)	397
PaeI	GCATGC	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	118, 163
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	27, 228
PspGI	CCWGG	2 cut(s)	27, 228
PspN4I	GGNNCC	4 cut(s)	16, 57, 552, 618
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	2 cut(s)	326, 582
RsaNI	GTAC	2 cut(s)	325, 581
RseI	CAYNNNNRTG	2 cut(s)	44, 397
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	117, 162
Sau3AI	GATC	3 cut(s)	14, 145, 200
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	29, 230
SduI	GDGCHC	3 cut(s)	39, 602, 619
SetI	ASST	7 cut(s)	57, 166, 198, 234, 273, 420, 450
SfaNI	GCATC	2 cut(s)	97, 549
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	44, 397
SmlI	CTYRAG	2 cut(s)	188, 328
SmoI	CTYRAG	2 cut(s)	188, 328
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	3 cut(s)	257, 279, 290
SspMI	CTAG	2 cut(s)	263, 395
StyD4I	CCNGG	2 cut(s)	27, 228
TaaI	ACNGT	3 cut(s)	25, 245, 443
TaqI	TCGA	1 cut(s)	608
TasI	AATT	3 cut(s)	257, 279, 290
TatI	WGTACW	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	2 cut(s)	116, 161
TspDTI	ATGAA	2 cut(s)	198, 563
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	2 cut(s)	263, 395
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.