Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1148796 .. 1150156

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02151.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTGAGTCTTACTCTCCTGCCAAGCTCGAGTTATTTGCAACCAGATCTGTGCAAGAGCAACTCGCTGAAGGTGAACTACTAGTACCATCACAGAAATATATTCTCAAAGATGGAATCACACTTCCAGATGCTTCTGTTGACTTGATGGATGTTCCGGTTATTGATCTTGGTCTCCTCACACCTTCCTCAATCAGTGAAGAAGAATTTGACAAACTAAGATCAGCTCTAACCAAATGGGGTTGCTTTCAGGTAATAAACCATGGAATGACTCCAGAATTCCTTGACAAAGTCCGTGAAGTCACGAAACAATTCTTTGCAATGCCCCTGGAAGAGAAGCATAAATATTTGAGGCCAGCCGACGATATTGAAGGATATGGGAATGACATGGTTTTTTCAGAGGAGCAAACACTTGATTGGACAGACAGACTATACCTTAATGTTTATCCACCAGACCTGCGCAAGCTAAAGTTTTGGCCTGAAAATCCCATATCTTTTAGGGATACTCTAGACCAGTATATCAGTCAGTTACAGGTGATAACAGAAACTGTCCTTAAGGGCATGGCGCGGTCATTGAATTTGGAGGAAGATTGCTTTCTGGACAAGTATGGAGAACAAAGGAAAATGCAGGCTAGGTTCTGCTTCTATCCTCCATGTTCAAGGCCCGATCGCGTACTCGGTGTCAAGCCACATGGAGATGGATCACTGATCACCCTTCTGTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATAATCAATGGTTTAGAGCTCCAATTGTTGCCGAGGCTCTTCTCATTAATGTTGGTGATCAAGCAGAGATATTGAGCAATGGACTGTTCAAGAGCCCAGTGCACAAGGTAGTGACAAATGCAGAGAAGGAGAGGATTTCTTTGGCTGTGTTCTGTCTTCCGGATTCAGAGACAGAGATTGGACCCTTTGAAAGCCTCATCAATGAGTCAAGGCCAAGGTTGTATAAAAATCTGAAAAACTACCTTGGCTTCTATTTCCAATACTACCAGCAGGGAAGAAGACCAATTGAGGCAGCAATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

40.68

Weight (kDa)

4.93

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	52 - 162	2.2e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 307	3.1e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	465
AccII	CGCG	2 cut(s)	568, 672
AccIII	TCCGGA	1 cut(s)	919
AciI	CCGC	1 cut(s)	568
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	3 cut(s)	206, 278, 577
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	87, 675
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	6 cut(s)	371, 577, 660, 749, 850, 950
AhlI	ACTAGT	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	4 cut(s)	28, 227, 466, 779
AluI	AGCT	4 cut(s)	28, 227, 466, 779
Alw21I	GWGCWC	2 cut(s)	781, 864
Alw26I	GTCTC	2 cut(s)	179, 923
Alw44I	GTGCAC	1 cut(s)	860
AlwI	GGATC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	919
AoxI	GGCC	4 cut(s)	353, 476, 662, 971
ApaLI	GTGCAC	1 cut(s)	860
ApeKI	GCWGC	1 cut(s)	1052
ApoI	RAATTY	3 cut(s)	206, 278, 577
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	2 cut(s)	311, 744
AspLEI	GCGC	2 cut(s)	462, 568
AspS9I	GGNCC	2 cut(s)	663, 941
AsuHPI	GGTGA	4 cut(s)	86, 547, 703, 827
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	941
BaeGI	GKGCMC	1 cut(s)	864
BanII	GRGCYC	2 cut(s)	781, 857
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	3 cut(s)	737, 908, 1045
Bbv12I	GWGCWC	2 cut(s)	781, 864
BccI	CCATC	4 cut(s)	97, 107, 142, 692
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	2 cut(s)	708, 817
BcoDI	GTCTC	2 cut(s)	179, 923
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	3 cut(s)	83, 509, 633
BfrI	CTTAAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	1 cut(s)	1053
BlsI	GCNGC	1 cut(s)	1054
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	941
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	663, 941
BmiI	GGNNCC	1 cut(s)	943
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	851
BpiI	GAAGAC	3 cut(s)	737, 908, 1045
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	5 cut(s)	262, 327, 792, 974, 1003
BsaWI	WCCGGW	2 cut(s)	157, 919
Bse1I	ACTGG	2 cut(s)	514, 857
Bse3DI	GCAATG	2 cut(s)	327, 844
BseAI	TCCGGA	1 cut(s)	919
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	5 cut(s)	262, 327, 792, 974, 1003
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	2 cut(s)	327, 844
BseNI	ACTGG	2 cut(s)	514, 857
BseRI	GAGGAG	2 cut(s)	167, 416
BseSI	GKGCMC	1 cut(s)	864
Bsh1236I	CGCG	2 cut(s)	568, 672
Bsh1285I	CGRYCG	1 cut(s)	670
BshFI	GGCC	4 cut(s)	355, 478, 664, 973
BsiEI	CGRYCG	1 cut(s)	670
BsiHKAI	GWGCWC	2 cut(s)	781, 864
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	158, 920
BsmAI	GTCTC	2 cut(s)	179, 923
BsnI	GGCC	4 cut(s)	355, 478, 664, 973
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	781, 857, 864
Bsp13I	TCCGGA	1 cut(s)	919
Bsp143I	GATC	7 cut(s)	47, 166, 221, 667, 701, 708, 817
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	1 cut(s)	568
BspANI	GGCC	4 cut(s)	355, 478, 664, 973
BspEI	TCCGGA	1 cut(s)	919
BspFNI	CGCG	2 cut(s)	568, 672
BspLI	GGNNCC	1 cut(s)	943
BspMI	ACCTGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	804
BspTI	CTTAAG	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	327, 844
BsrI	ACTGG	2 cut(s)	514, 857
BssECI	CCNNGG	5 cut(s)	262, 327, 792, 974, 1003
BssMI	GATC	7 cut(s)	47, 166, 221, 667, 701, 708, 817
BssT1I	CCWWGG	3 cut(s)	262, 974, 1003
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	550, 846
Bst6I	CTCTTC	2 cut(s)	327, 804
BstAFI	CTTAAG	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	357, 464, 630
BstDEI	CTNAG	2 cut(s)	6, 218
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	2 cut(s)	568, 672
BstHHI	GCGC	2 cut(s)	462, 568
BstKTI	GATC	7 cut(s)	50, 169, 224, 670, 704, 711, 820
BstMAI	GTCTC	2 cut(s)	179, 923
BstMBI	GATC	7 cut(s)	47, 166, 221, 667, 701, 708, 817
BstMCI	CGRYCG	1 cut(s)	670
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	864
BstUI	CGCG	2 cut(s)	568, 672
BstV2I	GAAGAC	3 cut(s)	737, 908, 1045
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	4 cut(s)	355, 478, 664, 973
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	202, 704, 864
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	357, 464, 630
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	2 cut(s)	462, 568
Cfr13I	GGNCC	2 cut(s)	663, 941
Csp6I	GTAC	2 cut(s)	86, 674
CviAII	CATG	5 cut(s)	263, 388, 562, 654, 692
CviQI	GTAC	2 cut(s)	86, 674
DdeI	CTNAG	2 cut(s)	6, 218
DpnI	GATC	7 cut(s)	49, 168, 223, 669, 703, 710, 819
DpnII	GATC	7 cut(s)	47, 166, 221, 667, 701, 708, 817
Eam1104I	CTCTTC	2 cut(s)	327, 804
EarI	CTCTTC	2 cut(s)	327, 804
Ecl136II	GAGCTC	1 cut(s)	779
Eco130I	CCWWGG	3 cut(s)	262, 974, 1003
Eco24I	GRGCYC	2 cut(s)	781, 857
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	941
Eco53kI	GAGCTC	1 cut(s)	779
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	3 cut(s)	262, 974, 1003
EcoT38I	GRGCYC	2 cut(s)	781, 857
ErhI	CCWWGG	3 cut(s)	262, 974, 1003
FaeI	CATG	5 cut(s)	266, 391, 565, 657, 695
FatI	CATG	5 cut(s)	262, 387, 561, 653, 691
FbaI	TGATCA	2 cut(s)	708, 817
Fnu4HI	GCNGC	1 cut(s)	1053
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	781, 857
Fsp4HI	GCNGC	1 cut(s)	1053
FspBI	CTAG	3 cut(s)	83, 509, 633
FspI	TGCGCA	1 cut(s)	461
GlaI	GCGC	2 cut(s)	461, 567
GluI	GCNGC	1 cut(s)	1053
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	355, 478, 664, 973
HapII	CCGG	2 cut(s)	158, 920
HhaI	GCGC	2 cut(s)	462, 568
Hin1II	CATG	5 cut(s)	266, 391, 565, 657, 695
Hin6I	GCGC	2 cut(s)	460, 566
HinP1I	GCGC	2 cut(s)	460, 566
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	5 cut(s)	8, 117, 271, 923, 965
HpaII	CCGG	2 cut(s)	158, 920
HphI	GGTGA	4 cut(s)	86, 547, 703, 827
Hpy166II	GTNNAC	3 cut(s)	77, 142, 862
Hpy188I	TCNGA	4 cut(s)	400, 756, 928, 993
Hpy188III	TCNNGA	7 cut(s)	128, 275, 304, 509, 599, 850, 920
Hpy8I	GTNNAC	3 cut(s)	77, 142, 862
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	6 cut(s)	65, 195, 365, 725, 734, 880
HpyCH4III	ACNGT	2 cut(s)	550, 846
HpyCH4V	TGCA	7 cut(s)	41, 55, 320, 628, 724, 862, 881
HpyF3I	CTNAG	2 cut(s)	6, 218
Hsp92II	CATG	5 cut(s)	266, 391, 565, 657, 695
HspAI	GCGC	2 cut(s)	460, 566
Kpn2I	TCCGGA	1 cut(s)	919
Ksp22I	TGATCA	2 cut(s)	708, 817
Kzo9I	GATC	7 cut(s)	47, 166, 221, 667, 701, 708, 817
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	2 cut(s)	403, 784
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	3 cut(s)	83, 509, 633
MaeIII	GTNAC	3 cut(s)	301, 528, 871
MalI	GATC	7 cut(s)	49, 168, 223, 669, 703, 710, 819
MboI	GATC	7 cut(s)	47, 166, 221, 667, 701, 708, 817
MboII	GAAGA	9 cut(s)	212, 215, 344, 599, 737, 791, 908, 1047, 1050
MfeI	CAATTG	2 cut(s)	783, 1044
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	3 cut(s)	781, 857, 864
MluCI	AATT	7 cut(s)	206, 278, 311, 577, 749, 783, 1044
MlyI	GAGTC	3 cut(s)	17, 265, 974
MroI	TCCGGA	1 cut(s)	919
MroXI	GAANNNNTTC	2 cut(s)	311, 744
MseI	TTAA	3 cut(s)	438, 555, 807
MslI	CAYNNNNRTG	1 cut(s)	696
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	2 cut(s)	158, 920
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	2 cut(s)	783, 1044
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	2 cut(s)	568, 672
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	7 cut(s)	47, 166, 221, 667, 701, 708, 817
NlaIII	CATG	5 cut(s)	266, 391, 565, 657, 695
NlaIV	GGNNCC	1 cut(s)	943
NmeAIII	GCCGAG	1 cut(s)	817
NmuCI	GTSAC	2 cut(s)	301, 871
NsbI	TGCGCA	1 cut(s)	461
PaeR7I	CTCGAG	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	804
PdmI	GAANNNNTTC	2 cut(s)	311, 744
PfeI	GAWTC	2 cut(s)	117, 923
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	1054
Ple19I	CGATCG	1 cut(s)	670
PleI	GAGTC	3 cut(s)	16, 265, 973
PpsI	GAGTC	3 cut(s)	16, 265, 973
PshBI	ATTAAT	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	781
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	943
PspPI	GGNCC	2 cut(s)	663, 941
PspXI	VCTCGAGB	1 cut(s)	29
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	290
PvuI	CGATCG	1 cut(s)	670
RsaI	GTAC	2 cut(s)	87, 675
RsaNI	GTAC	2 cut(s)	86, 674
RseI	CAYNNNNRTG	1 cut(s)	696
SacI	GAGCTC	1 cut(s)	781
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	3 cut(s)	438, 555, 807
SatI	GCNGC	1 cut(s)	1053
Sau3AI	GATC	7 cut(s)	47, 166, 221, 667, 701, 708, 817
Sau96I	GGNCC	2 cut(s)	663, 941
SchI	GAGTC	3 cut(s)	17, 265, 974
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	781, 857, 864
SfaNI	GCATC	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	941
SlaI	CTCGAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	2 cut(s)	29, 554
SmoI	CTYRAG	2 cut(s)	29, 554
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	7 cut(s)	206, 278, 311, 577, 749, 783, 1044
SsiI	CCGC	1 cut(s)	568
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	3 cut(s)	83, 509, 633
SstI	GAGCTC	1 cut(s)	781
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	3 cut(s)	262, 974, 1003
TaaI	ACNGT	2 cut(s)	550, 846
TaqI	TCGA	1 cut(s)	30
TasI	AATT	7 cut(s)	206, 278, 311, 577, 749, 783, 1044
TfiI	GAWTC	2 cut(s)	117, 923
Tru1I	TTAA	3 cut(s)	438, 555, 807
Tru9I	TTAA	3 cut(s)	438, 555, 807
TscAI	CASTG	3 cut(s)	202, 711, 864
TseFI	GTSAC	2 cut(s)	301, 871
TseI	GCWGC	1 cut(s)	1052
Tsp45I	GTSAC	2 cut(s)	301, 871
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	3 cut(s)	202, 711, 864
Tth111I	GACNNNGTC	1 cut(s)	290
Vha464I	CTTAAG	1 cut(s)	554
VneI	GTGCAC	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	941
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	3 cut(s)	206, 278, 577
XbaI	TCTAGA	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	29
XmnI	GAANNNNTTC	2 cut(s)	311, 744
XspI	CTAG	3 cut(s)	83, 509, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.