Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1144569 .. 1145950

Gene Structure 1382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTGATCAATCTTCCACTCCTGCCAAGGTCGAGTTTTTAGCTACCAAAACCGTGCAAGAGCAACTCACTGAAGGAGAACTACTAGTACCACCACCGGAATATATTCTCAAAGATGGAATCCCATGTCCGAATGCTTCTCTTGAGTTAATGGATGTTCCAATTATTGATCTTGGTCTCCTCATCCCTTCCTCAATCAGTGTGGAAGAACTTGACAAACTCAGATCAGCTCTTACCACGCGCGGTTGCTTTCAGGTAATAAACCATGGAATGACTCTTGAATTCCTTGACAAAGCCCGTGAAATCACCAAGCAGTTTTTCGCTATGCCAGTGGAAGAGAAACAGAAATATTTGAGGCCAGTTGATGATTTTGAAGGATATGGGAATGACATGGTTGTTTCAGAGCAGGAAACACTTGATTGGACTGACAGACTATACCTTACTGCATATCCACCAGACCAGCGCAAGCTCAAGTTGTGGCCTGAAAATCCCAAATCTTTCAGGGATACTCTAGACCAATATACCAGTAAGTTACAGGTGATAACTGAAACTGTCCTTAAGGGCATGGCGCGGTCATTGAATTTGGAGGAAGATTGCTTTGTGAACATGTATGGAGAACAAAGGAAAATGGATGCTAGGTTTAACTTATATCCTCCATGTTCAAGGCCTGATTGTGTCCTTGGTTTCAAGCCACATTCAGATAGTTCAATAATCACCATTATTTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTATGAAAGATGATCAATGGTTTAGGGCTCCCATTGTTCCTGAGGGGCTTCTCATTGTTGTTGGTGATCAAATAGAGATATTGACTAATGGACTGGTCAAGAGCCCTGTGCACAAGGTAGTGATAAATGGAGAAAAGGAGAGGATTTCTGTGGCTGTGTTCTGTGTCCCGGATTCAGAGACAGAGATTGAACCCTTTGAAAGCCTCATCAATGAGTCAAGGCCAAGGTTGTACAAAAAGCTGAAAAATTACGTTGAGATCTATTTTGAACACTTCCTGCAGGGAAGAAGGCCAATTGAAGCAGCACTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

356

Amino Acids

40.62

Weight (kDa)

4.83

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 163	2.4e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 308	2.3e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	241, 243, 571
AciI	CCGC	2 cut(s)	243, 571
AcsI	RAATTY	2 cut(s)	281, 580
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	90, 986
AflII	CTTAAG	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	606
AhlI	ACTAGT	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	44, 230, 469, 994
AluI	AGCT	4 cut(s)	44, 230, 469, 994
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	2 cut(s)	182, 926
Alw44I	GTGCAC	1 cut(s)	863
AoxI	GGCC	5 cut(s)	356, 479, 665, 974, 1043
ApaLI	GTGCAC	1 cut(s)	863
ApeKI	GCWGC	1 cut(s)	1055
ApoI	RAATTY	2 cut(s)	281, 580
Asp700I	GAANNNNTTC	2 cut(s)	105, 747
AspLEI	GCGC	3 cut(s)	243, 465, 571
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	4 cut(s)	298, 550, 706, 830
AxyI	CCTNAGG	1 cut(s)	795
BaeGI	GKGCMC	1 cut(s)	867
BanII	GRGCYC	2 cut(s)	784, 860
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	867
BccI	CCATC	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	499
BclI	TGATCA	3 cut(s)	7, 766, 820
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	2 cut(s)	182, 926
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	3 cut(s)	86, 512, 636
BfmI	CTRYAG	1 cut(s)	1031
BfrI	CTTAAG	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	499
BglII	AGATCT	1 cut(s)	1011
BisI	GCNGC	1 cut(s)	1056
BlsI	GCNGC	1 cut(s)	1057
Bme1390I	CCNGG	1 cut(s)	923
BmiI	GGNNCC	1 cut(s)	783
BmrFI	CCNGG	1 cut(s)	923
BmsI	GCATC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	740
BpuEI	CTTGAG	2 cut(s)	164, 455
BpuMI	CCSGG	1 cut(s)	923
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	27, 265, 679, 977
BsaWI	WCCGGW	1 cut(s)	97
Bse1I	ACTGG	4 cut(s)	329, 359, 525, 852
Bse21I	CCTNAGG	1 cut(s)	795
BseDI	CCNNGG	4 cut(s)	27, 265, 679, 977
BseGI	GGATG	3 cut(s)	160, 183, 637
BseMII	CTCAG	2 cut(s)	235, 786
BseNI	ACTGG	4 cut(s)	329, 359, 525, 852
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	867
Bsh1236I	CGCG	3 cut(s)	241, 243, 571
BshFI	GGCC	5 cut(s)	358, 481, 667, 976, 1045
BsiHKAI	GWGCWC	1 cut(s)	867
BsiSI	CCGG	2 cut(s)	98, 923
BslFI	GGGAC	1 cut(s)	905
BsmAI	GTCTC	2 cut(s)	182, 926
BsmFI	GGGAC	1 cut(s)	905
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	5 cut(s)	358, 481, 667, 976, 1045
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	784, 860, 867
Bsp1407I	TGTACA	1 cut(s)	984
Bsp143I	GATC	6 cut(s)	7, 169, 224, 766, 820, 1011
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	2 cut(s)	243, 571
BspANI	GGCC	5 cut(s)	358, 481, 667, 976, 1045
BspCNI	CTCAG	2 cut(s)	234, 787
BspFNI	CGCG	3 cut(s)	241, 243, 571
BspLI	GGNNCC	1 cut(s)	783
BspMAI	CTGCAG	1 cut(s)	1035
BspTI	CTTAAG	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	984
BsrI	ACTGG	4 cut(s)	329, 359, 525, 852
BssECI	CCNNGG	4 cut(s)	27, 265, 679, 977
BssMI	GATC	6 cut(s)	7, 169, 224, 766, 820, 1011
BssT1I	CCWWGG	4 cut(s)	27, 265, 679, 977
Bst4CI	ACNGT	2 cut(s)	55, 553
Bst6I	CTCTTC	1 cut(s)	330
BstAFI	CTTAAG	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	984
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	2 cut(s)	221, 795
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	3 cut(s)	160, 183, 637
BstFNI	CGCG	3 cut(s)	241, 243, 571
BstHHI	GCGC	3 cut(s)	243, 465, 571
BstKTI	GATC	6 cut(s)	10, 172, 227, 769, 823, 1014
BstMAI	GTCTC	2 cut(s)	182, 926
BstMBI	GATC	6 cut(s)	7, 169, 224, 766, 820, 1011
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	921
BstSFI	CTRYAG	1 cut(s)	1031
BstSLI	GKGCMC	1 cut(s)	867
BstUI	CGCG	3 cut(s)	241, 243, 571
BstV2I	GAAGAC	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	1011
BstYI	RGATCY	1 cut(s)	1011
Bsu36I	CCTNAGG	1 cut(s)	795
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	5 cut(s)	358, 481, 667, 976, 1045
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	160, 183, 637
BtsIMutI	CAGTG	3 cut(s)	69, 205, 336
Cac8I	GCNNGC	1 cut(s)	467
CfoI	GCGC	3 cut(s)	243, 465, 571
Csp6I	GTAC	2 cut(s)	89, 985
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	6 cut(s)	126, 266, 391, 565, 607, 657
CviQI	GTAC	2 cut(s)	89, 985
DdeI	CTNAG	2 cut(s)	221, 795
DpnI	GATC	6 cut(s)	9, 171, 226, 768, 822, 1013
DpnII	GATC	6 cut(s)	7, 169, 224, 766, 820, 1011
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	4 cut(s)	27, 265, 679, 977
Eco147I	AGGCCT	1 cut(s)	667
Eco24I	GRGCYC	2 cut(s)	784, 860
Eco31I	GGTCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	795
EcoRI	GAATTC	1 cut(s)	281
EcoT14I	CCWWGG	4 cut(s)	27, 265, 679, 977
EcoT38I	GRGCYC	2 cut(s)	784, 860
ErhI	CCWWGG	4 cut(s)	27, 265, 679, 977
FaeI	CATG	6 cut(s)	129, 269, 394, 568, 610, 660
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	6 cut(s)	125, 265, 390, 564, 606, 656
FbaI	TGATCA	3 cut(s)	7, 766, 820
Fnu4HI	GCNGC	1 cut(s)	1056
FokI	GGATG	3 cut(s)	167, 170, 644
FriOI	GRGCYC	2 cut(s)	784, 860
Fsp4HI	GCNGC	1 cut(s)	1056
FspBI	CTAG	3 cut(s)	86, 512, 636
GlaI	GCGC	3 cut(s)	242, 464, 570
GluI	GCNGC	1 cut(s)	1056
HaeIII	GGCC	5 cut(s)	358, 481, 667, 976, 1045
HapII	CCGG	2 cut(s)	98, 923
HhaI	GCGC	3 cut(s)	243, 465, 571
Hin1II	CATG	6 cut(s)	129, 269, 394, 568, 610, 660
Hin6I	GCGC	3 cut(s)	241, 463, 569
HinP1I	GCGC	3 cut(s)	241, 463, 569
HinfI	GANTC	4 cut(s)	120, 274, 926, 968
HpaII	CCGG	2 cut(s)	98, 923
HphI	GGTGA	4 cut(s)	298, 550, 706, 830
Hpy166II	GTNNAC	2 cut(s)	604, 865
Hpy188I	TCNGA	5 cut(s)	132, 224, 403, 700, 931
Hpy188III	TCNNGA	5 cut(s)	143, 278, 512, 794, 853
Hpy8I	GTNNAC	2 cut(s)	604, 865
HpyAV	CCTTC	5 cut(s)	68, 198, 368, 737, 1035
HpyCH4III	ACNGT	2 cut(s)	55, 553
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	5 cut(s)	58, 446, 727, 865, 1033
HpyF3I	CTNAG	2 cut(s)	221, 795
HpySE526I	ACGT	1 cut(s)	1005
Hsp92II	CATG	6 cut(s)	129, 269, 394, 568, 610, 660
HspAI	GCGC	3 cut(s)	241, 463, 569
Ksp22I	TGATCA	3 cut(s)	7, 766, 820
Kzo9I	GATC	6 cut(s)	7, 169, 224, 766, 820, 1011
LmnI	GCTCC	1 cut(s)	787
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	3 cut(s)	86, 512, 636
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	6 cut(s)	9, 171, 226, 768, 822, 1013
MboI	GATC	6 cut(s)	7, 169, 224, 766, 820, 1011
MboII	GAAGA	6 cut(s)	6, 218, 347, 602, 740, 1050
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	1 cut(s)	1011
MhlI	GDGCHC	3 cut(s)	784, 860, 867
MluCI	AATT	6 cut(s)	162, 281, 580, 752, 1000, 1047
MlyI	GAGTC	2 cut(s)	268, 977
MnlI	CCTC	8 cut(s)	191, 202, 348, 580, 663, 790, 888, 968
MroXI	GAANNNNTTC	2 cut(s)	105, 747
MseI	TTAA	3 cut(s)	149, 558, 642
MslI	CAYNNNNRTG	1 cut(s)	1063
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	2 cut(s)	98, 923
MspR9I	CCNGG	1 cut(s)	923
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	1 cut(s)	139
MvnI	CGCG	3 cut(s)	241, 243, 571
NciI	CCSGG	1 cut(s)	923
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	6 cut(s)	7, 169, 224, 766, 820, 1011
NlaIII	CATG	6 cut(s)	129, 269, 394, 568, 610, 660
NlaIV	GGNNCC	1 cut(s)	783
NspI	RCATGY	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	667
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	2 cut(s)	105, 747
PfeI	GAWTC	2 cut(s)	120, 926
PfoI	TCCNGGA	1 cut(s)	921
PkrI	GCNGC	1 cut(s)	1057
PleI	GAGTC	2 cut(s)	268, 976
PpsI	GAGTC	2 cut(s)	268, 976
PscI	ACATGT	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	783
PsrI	GAACNNNNNNTAC	2 cut(s)	72, 104
PstI	CTGCAG	1 cut(s)	1035
PsuI	RGATCY	1 cut(s)	1011
RsaI	GTAC	2 cut(s)	90, 986
RsaNI	GTAC	2 cut(s)	89, 985
RseI	CAYNNNNRTG	1 cut(s)	1063
SaqAI	TTAA	3 cut(s)	149, 558, 642
SatI	GCNGC	1 cut(s)	1056
Sau3AI	GATC	6 cut(s)	7, 169, 224, 766, 820, 1011
SbfI	CCTGCAGG	1 cut(s)	1035
SchI	GAGTC	2 cut(s)	268, 977
ScrFI	CCNGG	1 cut(s)	923
SdaI	CCTGCAGG	1 cut(s)	1035
SduI	GDGCHC	3 cut(s)	784, 860, 867
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	1031
SmiMI	CAYNNNNRTG	1 cut(s)	1063
SmlI	CTYRAG	3 cut(s)	143, 470, 557
SmoI	CTYRAG	3 cut(s)	143, 470, 557
SpeI	ACTAGT	1 cut(s)	85
Sse8387I	CCTGCAGG	1 cut(s)	1035
Sse9I	AATT	6 cut(s)	162, 281, 580, 752, 1000, 1047
SseBI	AGGCCT	1 cut(s)	667
SsiI	CCGC	2 cut(s)	243, 571
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	3 cut(s)	86, 512, 636
StuI	AGGCCT	1 cut(s)	667
StyD4I	CCNGG	1 cut(s)	921
StyI	CCWWGG	4 cut(s)	27, 265, 679, 977
TaaI	ACNGT	2 cut(s)	55, 553
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	1 cut(s)	33
TasI	AATT	6 cut(s)	162, 281, 580, 752, 1000, 1047
TatI	WGTACW	1 cut(s)	984
TfiI	GAWTC	2 cut(s)	120, 926
Tru1I	TTAA	3 cut(s)	149, 558, 642
Tru9I	TTAA	3 cut(s)	149, 558, 642
TscAI	CASTG	3 cut(s)	76, 205, 336
TseI	GCWGC	1 cut(s)	1055
TspDTI	ATGAA	1 cut(s)	773
TspRI	CASTG	3 cut(s)	76, 205, 336
Vha464I	CTTAAG	1 cut(s)	557
VneI	GTGCAC	1 cut(s)	863
XapI	RAATTY	2 cut(s)	281, 580
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	1 cut(s)	610
XmnI	GAANNNNTTC	2 cut(s)	105, 747
XspI	CTAG	3 cut(s)	86, 512, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.