Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

2051454 .. 2052623

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46268

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACACCTGAATTCCTTGACAAACTCCGTGAAATCACAAAACAGTTTTTTGCACTTCCAGTGGAAGAGAAGCAGAAATATTTGAGGCCAGTCGAGGATTTTGAAGGATATGGGAATGACATGGTTTTTTCAGAGCAGGAAACACTTGATTGGACTGACAGACTATACCTTATTGCATATCCACCAGACCAGCGCAAGCTCAAGCTTTGGCCTGAAAATCCCAAATCTTTTAGGGATACTCTAGACCAATATACCAGTAAGTTACAGGTGATAACAGAAACTGTCCTTAAGGCCATGGCGCGGTCATTGAATTTGGAGGAAGATTGCTTTCTGGATAAGTATGGAGAACAGAGGAAAATGGATGCTAGGTTTAACTTATATCCTCCATGTTCAAGGCCTGATCACGTCCACGGTTTCAAGCCACATTCAGATAGTTCAATAATCACCATTGTCTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGGGCTCCCATTGTTCCTGAGGCGCTTCTCATTATTGTTGGTGATCAAGTAGAGATATTGACTAATGGACTGTTCAAGAGCCCAGAGCACAAGGTAGTGATAAATGCAGAAAAGGAGAGGATCTCTGTGGCTGTGTTCTGTGTCCCAGATTCAGAGACAGAGATTGAACCCTTTGAAAGCCTCATCAATGAGTCAAGGCCAAGGTTGTACAAAAAGGTGAAAAACTACGTTGACATCTATTTCGAATACTACCAGCAGGGAAGAAGACCAATTGAAGCAGCAATGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

265

Amino Acids

31.18

Weight (kDa)

5.03

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	2 - 73	2.6e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	124 - 218	2e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	301
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	635
AcsI	RAATTY	2 cut(s)	11, 310
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	1 cut(s)	300
AflII	CTTAAG	1 cut(s)	287
AjiI	CACGTC	1 cut(s)	406
AluBI	AGCT	2 cut(s)	199, 205
AluI	AGCT	2 cut(s)	199, 205
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	5 cut(s)	86, 209, 291, 395, 704
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	2 cut(s)	11, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	3 cut(s)	195, 301, 532
AsuHPI	GGTGA	4 cut(s)	280, 436, 560, 736
AsuII	TTCGAA	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	525
BanII	GRGCYC	2 cut(s)	514, 590
BbsI	GAAGAC	2 cut(s)	470, 778
Bbv12I	GWGCWC	1 cut(s)	597
BciVI	GTATCC	1 cut(s)	229
BclI	TGATCA	3 cut(s)	400, 496, 550
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	242, 366
BfoI	RGCGCY	1 cut(s)	533
BfrI	CTTAAG	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	786
BlsI	GCNGC	1 cut(s)	787
BmgBI	CACGTC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	1 cut(s)	352
BpiI	GAAGAC	2 cut(s)	470, 778
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
Bpu14I	TTCGAA	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	294, 409, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	3 cut(s)	59, 89, 255
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	294, 409, 707
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	3 cut(s)	59, 89, 255
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	88, 211, 293, 397, 706
BsiHKAI	GWGCWC	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	5 cut(s)	88, 211, 293, 397, 706
Bsp119I	TTCGAA	1 cut(s)	750
Bsp1286I	GDGCHC	3 cut(s)	514, 590, 597
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	400, 496, 550, 627
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	5 cut(s)	88, 211, 293, 397, 706
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	750
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	795
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	59, 89, 255
BssECI	CCNNGG	3 cut(s)	294, 409, 707
BssMI	GATC	4 cut(s)	400, 496, 550, 627
BssT1I	CCWWGG	2 cut(s)	294, 707
Bst4CI	ACNGT	4 cut(s)	45, 283, 413, 579
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	2 cut(s)	294, 409
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	3 cut(s)	195, 301, 532
BstKTI	GATC	4 cut(s)	403, 499, 553, 630
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	400, 496, 550, 627
BstUI	CGCG	1 cut(s)	301
BstV2I	GAAGAC	2 cut(s)	470, 778
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	229
BsuRI	GGCC	5 cut(s)	88, 211, 293, 397, 706
BtgI	CCRYGG	2 cut(s)	294, 409
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	3 cut(s)	195, 301, 532
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	3 cut(s)	121, 295, 387
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	4 cut(s)	402, 498, 552, 629
DpnII	GATC	4 cut(s)	400, 496, 550, 627
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	294, 707
Eco147I	AGGCCT	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	514, 590
Eco81I	CCTNAGG	1 cut(s)	525
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	2 cut(s)	294, 707
EcoT38I	GRGCYC	2 cut(s)	514, 590
ErhI	CCWWGG	2 cut(s)	294, 707
FaeI	CATG	3 cut(s)	124, 298, 390
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	3 cut(s)	120, 294, 386
FbaI	TGATCA	3 cut(s)	400, 496, 550
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	2 cut(s)	514, 590
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	2 cut(s)	242, 366
GlaI	GCGC	3 cut(s)	194, 300, 531
GluI	GCNGC	1 cut(s)	786
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	5 cut(s)	88, 211, 293, 397, 706
HhaI	GCGC	3 cut(s)	195, 301, 532
Hin1II	CATG	3 cut(s)	124, 298, 390
Hin6I	GCGC	3 cut(s)	193, 299, 530
HinP1I	GCGC	3 cut(s)	193, 299, 530
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	2 cut(s)	656, 698
HphI	GGTGA	4 cut(s)	280, 436, 560, 736
Hpy166II	GTNNAC	2 cut(s)	409, 739
Hpy188I	TCNGA	4 cut(s)	133, 430, 489, 661
Hpy188III	TCNNGA	4 cut(s)	242, 332, 524, 583
Hpy8I	GTNNAC	2 cut(s)	409, 739
HpyAV	CCTTC	2 cut(s)	98, 467
HpyCH4III	ACNGT	4 cut(s)	45, 283, 413, 579
HpyCH4IV	ACGT	2 cut(s)	405, 735
HpyCH4V	TGCA	4 cut(s)	53, 176, 457, 614
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	2 cut(s)	405, 735
Hsp92II	CATG	3 cut(s)	124, 298, 390
HspAI	GCGC	3 cut(s)	193, 299, 530
Ksp22I	TGATCA	3 cut(s)	400, 496, 550
Kzo9I	GATC	4 cut(s)	400, 496, 550, 627
LmnI	GCTCC	1 cut(s)	517
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	242, 366
MaeII	ACGT	2 cut(s)	405, 735
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	4 cut(s)	402, 498, 552, 629
MboI	GATC	4 cut(s)	400, 496, 550, 627
MboII	GAAGA	5 cut(s)	77, 332, 470, 780, 783
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	3 cut(s)	514, 590, 597
MluCI	AATT	4 cut(s)	11, 310, 482, 777
MlyI	GAGTC	1 cut(s)	707
MnlI	CCTC	8 cut(s)	78, 88, 310, 345, 393, 520, 618, 698
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	288, 372
MspCI	CTTAAG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	4 cut(s)	400, 496, 550, 627
NlaIII	CATG	3 cut(s)	124, 298, 390
NlaIV	GGNNCC	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PspN4I	GGNNCC	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	627
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SaqAI	TTAA	2 cut(s)	288, 372
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	4 cut(s)	400, 496, 550, 627
SchI	GAGTC	1 cut(s)	707
SduI	GDGCHC	3 cut(s)	514, 590, 597
SfaNI	GCATC	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	200, 287
SmoI	CTYRAG	2 cut(s)	200, 287
Sse9I	AATT	4 cut(s)	11, 310, 482, 777
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	301
SspI	AATATT	1 cut(s)	80
SspMI	CTAG	2 cut(s)	242, 366
StuI	AGGCCT	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	294, 707
TaaI	ACNGT	4 cut(s)	45, 283, 413, 579
TaiI	ACGT	2 cut(s)	408, 738
TaqI	TCGA	2 cut(s)	93, 750
TasI	AATT	4 cut(s)	11, 310, 482, 777
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	2 cut(s)	288, 372
Tru9I	TTAA	2 cut(s)	288, 372
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	785
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	287
XapI	RAATTY	2 cut(s)	11, 310
XbaI	TCTAGA	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	2 cut(s)	242, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.