Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003367.1

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

60415 .. 61782

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003367.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggctgaatcttccactcctgccaaggccacggccgaattattagcaaccaaaactgtgcaagagctactcactgaaggagaactacttgtaccaccacagaaatttattctcaaggatggcatcccacttccaaatgcttctgttgagttgatggatgttccagttattgatcttggtctcctcacaccttcctcattcagtgtggaagaacttgacaaactcagatcagcacttaccacagggtgttgctttcatgtaataaaccatggaatgactccagaattccttgacaaagtccgtgaaatcaccagacagtttttcgcaattccagtggaagagaagcagaaatatttgaggccagtcgacgatattgaaggttatgggaatgacatggttttatcagagcagcaaacacttgattggactgatagactataccttactgtatatccaccagaccagcgcaggcttgagttttggcctgaaaatcccaaatcatttagggatactctagaccaatataccagtaagatgcaggtgataacagaaactgtccttaaggccatggcgtggtcattgaatttggaggaagattgctttctggacaagtatggagaacaaggaaaattggatgctaggtttaacttctatcctccatgttcaaggcctgatcgcatcctcggtttcaagccacatgcagatagttcaataatcaccattgtcttgcaagataaagaagtggaaggtcttcaatttctgaaagatgatcaatggtttagggctcccattgttcctgaggcgcttctcattaatgttggtgatcaagtagagatattgactaatggactgttcaagagcccagtgcacaaggttgtgataaatggagaaaaggagaggatttctttggctgtattctctttcccggattcagagacagagattaaacccttagaaagcctcatcaatgagtcaaggccaaggttgtacagaaaaatgaaaaactacggtgacatctttttcgaatactaccagcagggaataagaccaatcgaagcagcaataatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

356

Amino Acids

40.74

Weight (kDa)

4.81

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	573
AccI	GTMKAC	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	3 cut(s)	104, 284, 583
AcuI	CTGAAG	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	93, 989
AfiI	CCNNNNNNNGG	1 cut(s)	573
AflII	CTTAAG	1 cut(s)	560
AgsI	TTSAA	7 cut(s)	377, 583, 666, 691, 711, 755, 856
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	185, 929
Alw44I	GTGCAC	1 cut(s)	866
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	7 cut(s)	27, 33, 359, 482, 564, 668, 977
ApaLI	GTGCAC	1 cut(s)	866
ApeKI	GCWGC	2 cut(s)	409, 1058
ApoI	RAATTY	3 cut(s)	104, 284, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
AseI	ATTAAT	1 cut(s)	813
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	468, 805
AsuC2I	CCSGG	1 cut(s)	926
AsuHPI	GGTGA	5 cut(s)	301, 553, 709, 833, 1022
AsuII	TTCGAA	1 cut(s)	1023
AxyI	CCTNAGG	1 cut(s)	798
BaeGI	GKGCMC	1 cut(s)	870
BanII	GRGCYC	2 cut(s)	787, 863
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
BbsI	GAAGAC	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	2 cut(s)	113, 148
BceAI	ACGGC	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	2 cut(s)	769, 823
BcnI	CCSGG	1 cut(s)	926
BcoDI	GTCTC	2 cut(s)	185, 929
BfaI	CTAG	2 cut(s)	515, 639
BfoI	RGCGCY	1 cut(s)	806
BfrI	CTTAAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	529
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	2 cut(s)	410, 1059
BlsI	GCNGC	2 cut(s)	411, 1060
Bme1390I	CCNGG	1 cut(s)	926
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	1 cut(s)	926
BmrI	ACTGGG	1 cut(s)	857
BmsI	GCATC	4 cut(s)	132, 525, 625, 687
BmuI	ACTGGG	1 cut(s)	857
BpiI	GAAGAC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	1023
BpuEI	CTTGAG	2 cut(s)	98, 494
BpuMI	CCSGG	1 cut(s)	926
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	6 cut(s)	24, 30, 268, 567, 682, 980
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse1I	ACTGG	5 cut(s)	164, 332, 362, 528, 863
Bse21I	CCTNAGG	1 cut(s)	798
BseDI	CCNNGG	6 cut(s)	24, 30, 268, 567, 682, 980
BseGI	GGATG	5 cut(s)	123, 124, 163, 640, 678
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	238, 789
BseNI	ACTGG	5 cut(s)	164, 332, 362, 528, 863
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	870
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	421
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	7 cut(s)	29, 35, 361, 484, 566, 670, 979
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	926
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	2 cut(s)	185, 929
BsnI	GGCC	7 cut(s)	29, 35, 361, 484, 566, 670, 979
Bso31I	GGTCTC	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	1023
Bsp1286I	GDGCHC	3 cut(s)	787, 863, 870
Bsp1407I	TGTACA	1 cut(s)	987
Bsp143I	GATC	5 cut(s)	172, 227, 673, 769, 823
Bsp19I	CCATGG	2 cut(s)	268, 567
BspANI	GGCC	7 cut(s)	29, 35, 361, 484, 566, 670, 979
BspCNI	CTCAG	2 cut(s)	237, 790
BspLI	GGNNCC	1 cut(s)	786
BspMI	ACCTGC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	1023
BspTI	CTTAAG	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	987
BsrI	ACTGG	5 cut(s)	164, 332, 362, 528, 863
BssECI	CCNNGG	6 cut(s)	24, 30, 268, 567, 682, 980
BssMI	GATC	5 cut(s)	172, 227, 673, 769, 823
BssT1I	CCWWGG	4 cut(s)	24, 268, 567, 980
Bst4CI	ACNGT	6 cut(s)	58, 318, 448, 556, 852, 1010
Bst6I	CTCTTC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	987
BstBI	TTCGAA	1 cut(s)	1023
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	3 cut(s)	224, 798, 952
BstDSI	CCRYGG	3 cut(s)	30, 268, 567
BstF5I	GGATG	5 cut(s)	123, 124, 163, 640, 678
BstH2I	RGCGCY	1 cut(s)	806
BstHHI	GCGC	2 cut(s)	468, 805
BstKTI	GATC	5 cut(s)	175, 230, 676, 772, 826
BstMAI	GTCTC	2 cut(s)	185, 929
BstMBI	GATC	5 cut(s)	172, 227, 673, 769, 823
BstMCI	CGRYCG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	924
BstSLI	GKGCMC	1 cut(s)	870
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	743
BstZI	CGGCCG	1 cut(s)	33
Bsu36I	CCTNAGG	1 cut(s)	798
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	7 cut(s)	29, 35, 361, 484, 566, 670, 979
BtgI	CCRYGG	3 cut(s)	30, 268, 567
BtsCI	GGATG	5 cut(s)	123, 124, 163, 640, 678
BtsIMutI	CAGTG	4 cut(s)	72, 208, 339, 870
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	470
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	2 cut(s)	468, 805
Csp6I	GTAC	2 cut(s)	92, 988
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	6 cut(s)	257, 269, 394, 568, 660, 698
CviQI	GTAC	2 cut(s)	92, 988
DdeI	CTNAG	3 cut(s)	224, 798, 952
DpnI	GATC	5 cut(s)	174, 229, 675, 771, 825
DpnII	GATC	5 cut(s)	172, 227, 673, 769, 823
DraIII	CACNNNGTG	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	4 cut(s)	24, 268, 567, 980
Eco147I	AGGCCT	1 cut(s)	670
Eco24I	GRGCYC	2 cut(s)	787, 863
Eco31I	GGTCTC	1 cut(s)	185
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	798
EcoRI	GAATTC	1 cut(s)	284
EcoT14I	CCWWGG	4 cut(s)	24, 268, 567, 980
EcoT38I	GRGCYC	2 cut(s)	787, 863
ErhI	CCWWGG	4 cut(s)	24, 268, 567, 980
FaeI	CATG	6 cut(s)	260, 272, 397, 571, 663, 701
FatI	CATG	6 cut(s)	256, 268, 393, 567, 659, 697
FbaI	TGATCA	2 cut(s)	769, 823
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	410, 1059
FokI	GGATG	5 cut(s)	110, 131, 170, 647, 665
FriOI	GRGCYC	2 cut(s)	787, 863
Fsp4HI	GCNGC	2 cut(s)	410, 1059
FspBI	CTAG	2 cut(s)	515, 639
GlaI	GCGC	2 cut(s)	467, 804
GluI	GCNGC	2 cut(s)	410, 1059
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	806
HaeIII	GGCC	7 cut(s)	29, 35, 361, 484, 566, 670, 979
HapII	CCGG	1 cut(s)	926
HhaI	GCGC	2 cut(s)	468, 805
Hin1II	CATG	6 cut(s)	260, 272, 397, 571, 663, 701
Hin6I	GCGC	2 cut(s)	466, 803
HinP1I	GCGC	2 cut(s)	466, 803
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	4 cut(s)	8, 277, 929, 971
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	5 cut(s)	301, 553, 709, 833, 1022
Hpy166II	GTNNAC	2 cut(s)	367, 868
Hpy188I	TCNGA	4 cut(s)	227, 406, 762, 934
Hpy188III	TCNNGA	5 cut(s)	281, 515, 605, 797, 856
Hpy8I	GTNNAC	2 cut(s)	367, 868
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	4 cut(s)	71, 201, 371, 740
HpyCH4III	ACNGT	6 cut(s)	58, 318, 448, 556, 852, 1010
HpyCH4V	TGCA	5 cut(s)	61, 538, 701, 730, 868
HpyF3I	CTNAG	3 cut(s)	224, 798, 952
Hsp92II	CATG	6 cut(s)	260, 272, 397, 571, 663, 701
HspAI	GCGC	2 cut(s)	466, 803
Ksp22I	TGATCA	2 cut(s)	769, 823
Kzo9I	GATC	5 cut(s)	172, 227, 673, 769, 823
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	4 cut(s)	132, 525, 625, 687
MaeI	CTAG	2 cut(s)	515, 639
MaeIII	GTNAC	1 cut(s)	1010
MalI	GATC	5 cut(s)	174, 229, 675, 771, 825
MboI	GATC	5 cut(s)	172, 227, 673, 769, 823
MboII	GAAGA	5 cut(s)	3, 221, 350, 605, 743
MhlI	GDGCHC	3 cut(s)	787, 863, 870
MluCI	AATT	7 cut(s)	38, 104, 284, 327, 583, 629, 755
MlyI	GAGTC	2 cut(s)	271, 980
MnlI	CCTC	9 cut(s)	194, 205, 351, 583, 666, 692, 793, 891, 971
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	4 cut(s)	561, 645, 813, 945
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	1 cut(s)	926
NciI	CCSGG	1 cut(s)	926
NcoI	CCATGG	2 cut(s)	268, 567
NdeII	GATC	5 cut(s)	172, 227, 673, 769, 823
NlaIII	CATG	6 cut(s)	260, 272, 397, 571, 663, 701
NlaIV	GGNNCC	1 cut(s)	786
NmuCI	GTSAC	1 cut(s)	1010
NspI	RCATGY	1 cut(s)	701
NspV	TTCGAA	1 cut(s)	1023
PaqCI	CACCTGC	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	8, 929
PflFI	GACNNNGTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	573
PfoI	TCCNGGA	1 cut(s)	924
PkrI	GCNGC	2 cut(s)	411, 1060
PleI	GAGTC	2 cut(s)	271, 979
PpsI	GAGTC	2 cut(s)	271, 979
PshBI	ATTAAT	1 cut(s)	813
PspN4I	GGNNCC	1 cut(s)	786
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PstNI	CAGNNNCTG	1 cut(s)	554
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	93, 989
RsaNI	GTAC	2 cut(s)	92, 988
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	561, 645, 813, 945
SatI	GCNGC	2 cut(s)	410, 1059
Sau3AI	GATC	5 cut(s)	172, 227, 673, 769, 823
SchI	GAGTC	2 cut(s)	271, 980
ScrFI	CCNGG	1 cut(s)	926
SduI	GDGCHC	3 cut(s)	787, 863, 870
SetI	ASST	9 cut(s)	69, 193, 382, 444, 543, 644, 751, 876, 986
SfaNI	GCATC	4 cut(s)	132, 525, 625, 687
SfuI	TTCGAA	1 cut(s)	1023
SmlI	CTYRAG	3 cut(s)	113, 473, 560
SmoI	CTYRAG	3 cut(s)	113, 473, 560
Sse9I	AATT	7 cut(s)	38, 104, 284, 327, 583, 629, 755
SseBI	AGGCCT	1 cut(s)	670
SspI	AATATT	1 cut(s)	353
SspMI	CTAG	2 cut(s)	515, 639
StuI	AGGCCT	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	924
StyI	CCWWGG	4 cut(s)	24, 268, 567, 980
TaaI	ACNGT	6 cut(s)	58, 318, 448, 556, 852, 1010
TaqI	TCGA	3 cut(s)	366, 1023, 1053
TasI	AATT	7 cut(s)	38, 104, 284, 327, 583, 629, 755
TatI	WGTACW	1 cut(s)	987
TfiI	GAWTC	2 cut(s)	8, 929
Tru1I	TTAA	4 cut(s)	561, 645, 813, 945
Tru9I	TTAA	4 cut(s)	561, 645, 813, 945
TscAI	CASTG	4 cut(s)	79, 208, 339, 870
TseFI	GTSAC	1 cut(s)	1010
TseI	GCWGC	2 cut(s)	409, 1058
Tsp45I	GTSAC	1 cut(s)	1010
TspDTI	ATGAA	2 cut(s)	245, 1013
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	4 cut(s)	79, 208, 339, 870
Tth111I	GACNNNGTC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	573
Vha464I	CTTAAG	1 cut(s)	560
VneI	GTGCAC	1 cut(s)	866
VspI	ATTAAT	1 cut(s)	813
XapI	RAATTY	3 cut(s)	104, 284, 583
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	2 cut(s)	515, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.