Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1634460 .. 1635821

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTGAATCTTCCACTCCTGCCAAGGCAGAATTATTAGCAACCAAAACTGTGCAAGAGCTACTCACTGAAGGAGAACTACTTGTACCACCACAGAAATTTATTCTCAAAGATGGCATCCCACTTCCAAATGCTTCTGTTGAGTTGATGGATGTTCCAGTTATTGATCTTGGTCTCCTCACACCTTCCTCATTCAGTGTGGAAGAACTTGACAAACTCAGATCAGCACTTACCACAGGGTGTTGCTTTCATGTAATAAACCATGGAATGACTCCAGAATTCCTTGACAAAGTCCGTGAAATCACCAAACAGTTTTTCGCAATTCCAGTGGAAGAGAAGCAGAAATATTTGAGGCCAGTCGATGATATTGAAGGTTATGGGAATGACATGGTTTTATCGGAGCAGCAAACACTTGATTGGACTGATAGACTATACCTTACTGTATATCCACCACACCAGCGCAGGCTCGAGTTTTGGCCTGAAAATCCCAAATCTTTTAGGGATACTCTAGACCAATATACCAGTAAGATGCAGGTGATAACAGAAACTGTCCTTAAGGCCATGGCGTGGTCATTGAATTTGGAGGAAGATTGCTTTATGGACAAGTATGGAGAACAAGGAAAATTGGATGCTAGGTTTAACTTCTATCCTCCATGTTCAAGGCCTGATCGCATCCTCGGTTTCAAGCCACATGCAGATAGTTCAATAATCACCATTGTCTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGGGCTCCCATTGTTCCTGAGGCGCTTCTCATTAATGTTGGTGATCAAGTAGAGATATTGACTAATGGACTGTTCAAGAGCCCAGTGCACAAGGTTGTGATAAATGGAGAAAAGGAGAGGATTTCTTTGGCTGTATTCTCTTTCCCGGATTCAGAGACAGAGATTAAACCCTTAGAAAGCCTCATCAATGAGTCAAGGCCAAGGTTGTACAGAAAAATGAAAAACTACGGTGACATCTTTTTCGAATACTACCAGCAGGGAATAAGACCAATCGAAGCAGCAATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

354

Amino Acids

40.58

Weight (kDa)

4.89

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	52 - 162	2.4e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 307	4e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	567
AcsI	RAATTY	3 cut(s)	98, 278, 577
AcuI	CTGAAG	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	87, 983
AfiI	CCNNNNNNNGG	1 cut(s)	567
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	7 cut(s)	371, 577, 660, 685, 705, 749, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	2 cut(s)	179, 923
Alw44I	GTGCAC	1 cut(s)	860
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	5 cut(s)	353, 476, 558, 662, 971
ApaLI	GTGCAC	1 cut(s)	860
ApeKI	GCWGC	2 cut(s)	403, 1052
ApoI	RAATTY	3 cut(s)	98, 278, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	998, 1030
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	2 cut(s)	462, 799
AsuC2I	CCSGG	1 cut(s)	920
AsuHPI	GGTGA	5 cut(s)	295, 547, 703, 827, 1016
AsuII	TTCGAA	1 cut(s)	1017
AvaI	CYCGRG	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	792
BaeGI	GKGCMC	1 cut(s)	864
BanII	GRGCYC	2 cut(s)	781, 857
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	864
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	107, 142
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	2 cut(s)	763, 817
BcnI	CCSGG	1 cut(s)	920
BcoDI	GTCTC	2 cut(s)	179, 923
BfaI	CTAG	2 cut(s)	509, 633
BfoI	RGCGCY	1 cut(s)	800
BfrI	CTTAAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	2 cut(s)	404, 1053
BlsI	GCNGC	2 cut(s)	405, 1054
Bme1390I	CCNGG	1 cut(s)	920
BmeT110I	CYCGRG	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	780
BmrFI	CCNGG	1 cut(s)	920
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	4 cut(s)	126, 519, 619, 681
BmuI	ACTGGG	1 cut(s)	851
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	1017
BpuMI	CCSGG	1 cut(s)	920
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	5 cut(s)	24, 262, 561, 676, 974
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	5 cut(s)	158, 326, 356, 522, 857
Bse21I	CCTNAGG	1 cut(s)	792
BseDI	CCNNGG	5 cut(s)	24, 262, 561, 676, 974
BseGI	GGATG	4 cut(s)	117, 157, 634, 672
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	232, 783
BseNI	ACTGG	5 cut(s)	158, 326, 356, 522, 857
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	5 cut(s)	355, 478, 560, 664, 973
BsiHKAI	GWGCWC	1 cut(s)	864
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	920
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmAI	GTCTC	2 cut(s)	179, 923
BsnI	GGCC	5 cut(s)	355, 478, 560, 664, 973
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	1017
Bsp1286I	GDGCHC	3 cut(s)	781, 857, 864
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	5 cut(s)	166, 221, 667, 763, 817
Bsp19I	CCATGG	2 cut(s)	262, 561
BspANI	GGCC	5 cut(s)	355, 478, 560, 664, 973
BspCNI	CTCAG	2 cut(s)	231, 784
BspLI	GGNNCC	1 cut(s)	780
BspMI	ACCTGC	1 cut(s)	523
BspT104I	TTCGAA	1 cut(s)	1017
BspTI	CTTAAG	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	981
BsrI	ACTGG	5 cut(s)	158, 326, 356, 522, 857
BssECI	CCNNGG	5 cut(s)	24, 262, 561, 676, 974
BssMI	GATC	5 cut(s)	166, 221, 667, 763, 817
BssT1I	CCWWGG	4 cut(s)	24, 262, 561, 974
Bst4CI	ACNGT	6 cut(s)	52, 312, 442, 550, 846, 1004
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	981
BstBI	TTCGAA	1 cut(s)	1017
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	3 cut(s)	218, 792, 946
BstDSI	CCRYGG	2 cut(s)	262, 561
BstF5I	GGATG	4 cut(s)	117, 157, 634, 672
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	2 cut(s)	462, 799
BstKTI	GATC	5 cut(s)	169, 224, 670, 766, 820
BstMAI	GTCTC	2 cut(s)	179, 923
BstMBI	GATC	5 cut(s)	166, 221, 667, 763, 817
BstNSI	RCATGY	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	864
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	737
Bsu36I	CCTNAGG	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	5 cut(s)	355, 478, 560, 664, 973
BtgI	CCRYGG	2 cut(s)	262, 561
BtsCI	GGATG	4 cut(s)	117, 157, 634, 672
BtsIMutI	CAGTG	4 cut(s)	66, 202, 333, 864
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	464
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	2 cut(s)	462, 799
Csp6I	GTAC	2 cut(s)	86, 982
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	6 cut(s)	251, 263, 388, 562, 654, 692
CviQI	GTAC	2 cut(s)	86, 982
DdeI	CTNAG	3 cut(s)	218, 792, 946
DpnI	GATC	5 cut(s)	168, 223, 669, 765, 819
DpnII	GATC	5 cut(s)	166, 221, 667, 763, 817
DraIII	CACNNNGTG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	4 cut(s)	24, 262, 561, 974
Eco147I	AGGCCT	1 cut(s)	664
Eco24I	GRGCYC	2 cut(s)	781, 857
Eco31I	GGTCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	467
EcoRI	GAATTC	1 cut(s)	278
EcoT14I	CCWWGG	4 cut(s)	24, 262, 561, 974
EcoT38I	GRGCYC	2 cut(s)	781, 857
ErhI	CCWWGG	4 cut(s)	24, 262, 561, 974
FaeI	CATG	6 cut(s)	254, 266, 391, 565, 657, 695
FatI	CATG	6 cut(s)	250, 262, 387, 561, 653, 691
FbaI	TGATCA	2 cut(s)	763, 817
Fnu4HI	GCNGC	2 cut(s)	404, 1053
FokI	GGATG	4 cut(s)	104, 164, 641, 659
FriOI	GRGCYC	2 cut(s)	781, 857
Fsp4HI	GCNGC	2 cut(s)	404, 1053
FspBI	CTAG	2 cut(s)	509, 633
GlaI	GCGC	2 cut(s)	461, 798
GluI	GCNGC	2 cut(s)	404, 1053
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	800
HaeIII	GGCC	5 cut(s)	355, 478, 560, 664, 973
HapII	CCGG	1 cut(s)	920
HhaI	GCGC	2 cut(s)	462, 799
Hin1II	CATG	6 cut(s)	254, 266, 391, 565, 657, 695
Hin6I	GCGC	2 cut(s)	460, 797
HinP1I	GCGC	2 cut(s)	460, 797
HinfI	GANTC	4 cut(s)	8, 271, 923, 965
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	5 cut(s)	295, 547, 703, 827, 1016
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188I	TCNGA	4 cut(s)	221, 400, 756, 928
Hpy188III	TCNNGA	4 cut(s)	275, 509, 791, 850
Hpy8I	GTNNAC	1 cut(s)	862
HpyAV	CCTTC	4 cut(s)	65, 195, 365, 734
HpyCH4III	ACNGT	6 cut(s)	52, 312, 442, 550, 846, 1004
HpyCH4V	TGCA	5 cut(s)	55, 532, 695, 724, 862
HpyF3I	CTNAG	3 cut(s)	218, 792, 946
Hsp92II	CATG	6 cut(s)	254, 266, 391, 565, 657, 695
HspAI	GCGC	2 cut(s)	460, 797
Ksp22I	TGATCA	2 cut(s)	763, 817
Kzo9I	GATC	5 cut(s)	166, 221, 667, 763, 817
LmnI	GCTCC	2 cut(s)	400, 784
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	4 cut(s)	126, 519, 619, 681
MaeI	CTAG	2 cut(s)	509, 633
MaeIII	GTNAC	1 cut(s)	1004
MalI	GATC	5 cut(s)	168, 223, 669, 765, 819
MboI	GATC	5 cut(s)	166, 221, 667, 763, 817
MboII	GAAGA	5 cut(s)	3, 215, 344, 599, 737
MhlI	GDGCHC	3 cut(s)	781, 857, 864
MluCI	AATT	7 cut(s)	32, 98, 278, 321, 577, 623, 749
MlyI	GAGTC	2 cut(s)	265, 974
MnlI	CCTC	9 cut(s)	188, 199, 345, 577, 660, 686, 787, 885, 965
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	4 cut(s)	555, 639, 807, 939
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	1 cut(s)	920
NciI	CCSGG	1 cut(s)	920
NcoI	CCATGG	2 cut(s)	262, 561
NdeII	GATC	5 cut(s)	166, 221, 667, 763, 817
NlaIII	CATG	6 cut(s)	254, 266, 391, 565, 657, 695
NlaIV	GGNNCC	1 cut(s)	780
NmuCI	GTSAC	1 cut(s)	1004
NspI	RCATGY	1 cut(s)	695
NspV	TTCGAA	1 cut(s)	1017
PaeR7I	CTCGAG	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	2 cut(s)	8, 923
PflFI	GACNNNGTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	567
PfoI	TCCNGGA	1 cut(s)	918
PkrI	GCNGC	2 cut(s)	405, 1054
PleI	GAGTC	2 cut(s)	265, 973
PpsI	GAGTC	2 cut(s)	265, 973
PshBI	ATTAAT	1 cut(s)	807
PspN4I	GGNNCC	1 cut(s)	780
PspXI	VCTCGAGB	1 cut(s)	467
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
PstNI	CAGNNNCTG	1 cut(s)	548
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	2 cut(s)	87, 983
RsaNI	GTAC	2 cut(s)	86, 982
SaqAI	TTAA	4 cut(s)	555, 639, 807, 939
SatI	GCNGC	2 cut(s)	404, 1053
Sau3AI	GATC	5 cut(s)	166, 221, 667, 763, 817
SchI	GAGTC	2 cut(s)	265, 974
ScrFI	CCNGG	1 cut(s)	920
SduI	GDGCHC	3 cut(s)	781, 857, 864
SetI	ASST	9 cut(s)	63, 187, 376, 438, 537, 638, 745, 870, 980
SfaNI	GCATC	4 cut(s)	126, 519, 619, 681
Sfr274I	CTCGAG	1 cut(s)	467
SfuI	TTCGAA	1 cut(s)	1017
SlaI	CTCGAG	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	467, 554
SmoI	CTYRAG	2 cut(s)	467, 554
Sse9I	AATT	7 cut(s)	32, 98, 278, 321, 577, 623, 749
SseBI	AGGCCT	1 cut(s)	664
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	2 cut(s)	509, 633
StuI	AGGCCT	1 cut(s)	664
StyD4I	CCNGG	1 cut(s)	918
StyI	CCWWGG	4 cut(s)	24, 262, 561, 974
TaaI	ACNGT	6 cut(s)	52, 312, 442, 550, 846, 1004
TaqI	TCGA	4 cut(s)	360, 468, 1017, 1047
TasI	AATT	7 cut(s)	32, 98, 278, 321, 577, 623, 749
TatI	WGTACW	1 cut(s)	981
TfiI	GAWTC	2 cut(s)	8, 923
Tru1I	TTAA	4 cut(s)	555, 639, 807, 939
Tru9I	TTAA	4 cut(s)	555, 639, 807, 939
TscAI	CASTG	4 cut(s)	73, 202, 333, 864
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	2 cut(s)	403, 1052
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	2 cut(s)	239, 1007
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	4 cut(s)	73, 202, 333, 864
Tth111I	GACNNNGTC	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	567
Vha464I	CTTAAG	1 cut(s)	554
VneI	GTGCAC	1 cut(s)	860
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	3 cut(s)	98, 278, 577
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	2 cut(s)	509, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.