Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1625450 .. 1626808

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTGAATTTCCCACTCCTGCCAAGGTCGAGTTAATAGCAACCAAAACTGTGCAAGAGCAACTCACTGAAGGAGAACTACTAGTACCACAGAAATATATTCTCAAAGATGGTGTCCCACTTCCAAATGCTTCTGTTGAGTTAATGGATGTTCCAGTTATTGATCTTGGTCTCCTTACACCTTCCTCAATCAGTGTGGAAGAACTTGACAAACTCGGATCAGCTCTTAGTAGAGGGTGTTGCTTTCATGTAATAAACCATGGCATGACACCTGAATTCCTTGACAAACTTCGTGAAATCACGAAACAGTTTTTTGCAATTCCAGTGGAAGAGAAGCAGAAATATTTGAGGCCAGTCGAGGATTTTGAAGGATATGGGAATGACATGGTTTTCTCAGAGCAGGAAACACTTGATTGGACTGACAGACTATACCTTATTGCATATCCACCAGACCAGCGCAAGCTCAAGCTTTGGCCTGAAAATCCCAAATCTTTTAGGGATACTCTAGACCAATATACCAGTAAGTTACAGGTGATAACAGAAACTGTCCTTAAGGCCATGGCGCGGTCATTGAATTTGGAGGAAGATTGCTTTCTGGATAAGTATGGAGAACAGAGGAAAATGGATGCTAGGTTTAACTTATATCCTCCATGTTCAAGGCCTGATCACGTCCACGGTTTCAAGCCACATTCAGATAGTTCAATAATCACCATTGTCTTGCAAGATAAAGAAGTGGAAGGTCTTCAATTTCTGAAAGATGATCAATGGTTTAGGGCTCCCATTGTTCCTGAGGCGCTTCTCATTATTGTTGGTGATCAAGTAGAGATATTGACTAATGGACTGTTCAAGAGCCCAGAGCACAAGGTAGTGATAAATGCAGAAAAGGAGAGGATCTCTGTGGCTGTGTTCTGTGTCCCGGATTCAGAGACAGAGATTGAACCCTTTGAAAGCCTCATCAATGAGTCAAGGCCAAGGTTGTACAAAAAGGTGAAAAACTACGTTGACATCTATTTCGAATACTACCAGCAGGGAAGAAGACCAATTGAAGCAGCAATGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

353

Amino Acids

40.62

Weight (kDa)

4.93

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 161	3e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 306	3.5e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	565
AciI	CCGC	1 cut(s)	565
AclWI	GGATC	2 cut(s)	226, 899
AcsI	RAATTY	3 cut(s)	8, 275, 574
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	87, 980
AfiI	CCNNNNNNNGG	1 cut(s)	564
AflII	CTTAAG	1 cut(s)	551
AhlI	ACTAGT	1 cut(s)	82
AjiI	CACGTC	1 cut(s)	670
AluBI	AGCT	3 cut(s)	224, 463, 469
AluI	AGCT	3 cut(s)	224, 463, 469
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	2 cut(s)	176, 920
AlwI	GGATC	2 cut(s)	226, 899
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	5 cut(s)	350, 473, 555, 659, 968
ApeKI	GCWGC	1 cut(s)	1049
ApoI	RAATTY	3 cut(s)	8, 275, 574
ArsI	GACNNNNNNTTYG	4 cut(s)	99, 131, 995, 1027
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	3 cut(s)	459, 565, 796
AsuC2I	CCSGG	1 cut(s)	917
AsuHPI	GGTGA	4 cut(s)	544, 700, 824, 1000
AsuII	TTCGAA	1 cut(s)	1014
AxyI	CCTNAGG	1 cut(s)	789
BanII	GRGCYC	2 cut(s)	778, 854
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	2 cut(s)	734, 1042
Bbv12I	GWGCWC	1 cut(s)	861
BccI	CCATC	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	493
BclI	TGATCA	3 cut(s)	664, 760, 814
BcnI	CCSGG	1 cut(s)	917
BcoDI	GTCTC	2 cut(s)	176, 920
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	3 cut(s)	83, 506, 630
BfoI	RGCGCY	1 cut(s)	797
BfrI	CTTAAG	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	1 cut(s)	1050
BlsI	GCNGC	1 cut(s)	1051
Bme1390I	CCNGG	1 cut(s)	917
BmgBI	CACGTC	1 cut(s)	670
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	1 cut(s)	917
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	734, 1042
BplI	GAGNNNNNCTC	2 cut(s)	878, 910
Bpu14I	TTCGAA	1 cut(s)	1014
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	917
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	5 cut(s)	24, 259, 558, 673, 971
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse1I	ACTGG	4 cut(s)	155, 323, 353, 519
Bse21I	CCTNAGG	1 cut(s)	789
Bse3DI	GCAATG	1 cut(s)	1059
BseDI	CCNNGG	5 cut(s)	24, 259, 558, 673, 971
BseGI	GGATG	2 cut(s)	154, 631
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseMI	GCAATG	1 cut(s)	1059
BseMII	CTCAG	2 cut(s)	408, 780
BseNI	ACTGG	4 cut(s)	155, 323, 353, 519
Bsh1236I	CGCG	1 cut(s)	565
BshFI	GGCC	5 cut(s)	352, 475, 557, 661, 970
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	2 cut(s)	101, 899
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmAI	GTCTC	2 cut(s)	176, 920
BsmFI	GGGAC	2 cut(s)	101, 899
BsnI	GGCC	5 cut(s)	352, 475, 557, 661, 970
Bso31I	GGTCTC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	1014
Bsp1286I	GDGCHC	3 cut(s)	778, 854, 861
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	6 cut(s)	163, 218, 664, 760, 814, 891
Bsp19I	CCATGG	2 cut(s)	259, 558
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	5 cut(s)	352, 475, 557, 661, 970
BspCNI	CTCAG	2 cut(s)	407, 781
BspFNI	CGCG	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	777
BspPI	GGATC	2 cut(s)	226, 899
BspT104I	TTCGAA	1 cut(s)	1014
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	1059
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	4 cut(s)	155, 323, 353, 519
BssECI	CCNNGG	5 cut(s)	24, 259, 558, 673, 971
BssMI	GATC	6 cut(s)	163, 218, 664, 760, 814, 891
BssT1I	CCWWGG	4 cut(s)	24, 259, 558, 971
Bst4CI	ACNGT	5 cut(s)	52, 309, 547, 677, 843
Bst6I	CTCTTC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	978
BstBI	TTCGAA	1 cut(s)	1014
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	3 cut(s)	227, 394, 789
BstDSI	CCRYGG	3 cut(s)	259, 558, 673
BstF5I	GGATG	2 cut(s)	154, 631
BstFNI	CGCG	1 cut(s)	565
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	3 cut(s)	459, 565, 796
BstKTI	GATC	6 cut(s)	166, 221, 667, 763, 817, 894
BstMAI	GTCTC	2 cut(s)	176, 920
BstMBI	GATC	6 cut(s)	163, 218, 664, 760, 814, 891
BstSCI	CCNGG	1 cut(s)	915
BstUI	CGCG	1 cut(s)	565
BstV2I	GAAGAC	2 cut(s)	734, 1042
BstX2I	RGATCY	1 cut(s)	891
BstYI	RGATCY	1 cut(s)	891
Bsu36I	CCTNAGG	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	5 cut(s)	352, 475, 557, 661, 970
BtgI	CCRYGG	3 cut(s)	259, 558, 673
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	2 cut(s)	154, 631
BtsIMutI	CAGTG	3 cut(s)	66, 199, 330
Cac8I	GCNNGC	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	545
CfoI	GCGC	3 cut(s)	459, 565, 796
Csp6I	GTAC	2 cut(s)	86, 979
CspCI	CAANNNNNGTGG	4 cut(s)	177, 212, 306, 341
CviAII	CATG	6 cut(s)	248, 260, 265, 385, 559, 651
CviQI	GTAC	2 cut(s)	86, 979
DdeI	CTNAG	3 cut(s)	227, 394, 789
DpnI	GATC	6 cut(s)	165, 220, 666, 762, 816, 893
DpnII	GATC	6 cut(s)	163, 218, 664, 760, 814, 891
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	4 cut(s)	24, 259, 558, 971
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	2 cut(s)	778, 854
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	789
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	4 cut(s)	24, 259, 558, 971
EcoT38I	GRGCYC	2 cut(s)	778, 854
ErhI	CCWWGG	4 cut(s)	24, 259, 558, 971
FaeI	CATG	6 cut(s)	251, 263, 268, 388, 562, 654
FaqI	GGGAC	2 cut(s)	101, 899
FatI	CATG	6 cut(s)	247, 259, 264, 384, 558, 650
FbaI	TGATCA	3 cut(s)	664, 760, 814
Fnu4HI	GCNGC	1 cut(s)	1050
FokI	GGATG	2 cut(s)	161, 638
FriOI	GRGCYC	2 cut(s)	778, 854
Fsp4HI	GCNGC	1 cut(s)	1050
FspBI	CTAG	3 cut(s)	83, 506, 630
GlaI	GCGC	3 cut(s)	458, 564, 795
GluI	GCNGC	1 cut(s)	1050
HaeII	RGCGCY	1 cut(s)	797
HaeIII	GGCC	5 cut(s)	352, 475, 557, 661, 970
HapII	CCGG	1 cut(s)	917
HhaI	GCGC	3 cut(s)	459, 565, 796
Hin1II	CATG	6 cut(s)	251, 263, 268, 388, 562, 654
Hin6I	GCGC	3 cut(s)	457, 563, 794
HinP1I	GCGC	3 cut(s)	457, 563, 794
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	920, 962
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	4 cut(s)	544, 700, 824, 1000
Hpy166II	GTNNAC	2 cut(s)	673, 1003
Hpy188I	TCNGA	5 cut(s)	218, 397, 694, 753, 925
Hpy188III	TCNNGA	6 cut(s)	293, 301, 506, 596, 788, 847
Hpy8I	GTNNAC	2 cut(s)	673, 1003
HpyAV	CCTTC	4 cut(s)	65, 192, 362, 731
HpyCH4III	ACNGT	5 cut(s)	52, 309, 547, 677, 843
HpyCH4IV	ACGT	2 cut(s)	669, 999
HpyCH4V	TGCA	5 cut(s)	55, 317, 440, 721, 878
HpyF3I	CTNAG	3 cut(s)	227, 394, 789
HpySE526I	ACGT	2 cut(s)	669, 999
Hsp92II	CATG	6 cut(s)	251, 263, 268, 388, 562, 654
HspAI	GCGC	3 cut(s)	457, 563, 794
Ksp22I	TGATCA	3 cut(s)	664, 760, 814
Kzo9I	GATC	6 cut(s)	163, 218, 664, 760, 814, 891
LmnI	GCTCC	1 cut(s)	781
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	3 cut(s)	83, 506, 630
MaeII	ACGT	2 cut(s)	669, 999
MaeIII	GTNAC	1 cut(s)	525
MalI	GATC	6 cut(s)	165, 220, 666, 762, 816, 893
MboI	GATC	6 cut(s)	163, 218, 664, 760, 814, 891
MboII	GAAGA	6 cut(s)	212, 341, 596, 734, 1044, 1047
MfeI	CAATTG	1 cut(s)	1041
MflI	RGATCY	1 cut(s)	891
MhlI	GDGCHC	3 cut(s)	778, 854, 861
MluCI	AATT	6 cut(s)	8, 275, 318, 574, 746, 1041
MlyI	GAGTC	1 cut(s)	971
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	4 cut(s)	35, 143, 552, 636
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	917
MunI	CAATTG	1 cut(s)	1041
MvnI	CGCG	1 cut(s)	565
NciI	CCSGG	1 cut(s)	917
NcoI	CCATGG	2 cut(s)	259, 558
NdeII	GATC	6 cut(s)	163, 218, 664, 760, 814, 891
NlaIII	CATG	6 cut(s)	251, 263, 268, 388, 562, 654
NlaIV	GGNNCC	1 cut(s)	777
NspV	TTCGAA	1 cut(s)	1014
PceI	AGGCCT	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	920
PfoI	TCCNGGA	1 cut(s)	915
PkrI	GCNGC	1 cut(s)	1051
PleI	GAGTC	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	970
PspN4I	GGNNCC	1 cut(s)	777
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	891
RsaI	GTAC	2 cut(s)	87, 980
RsaNI	GTAC	2 cut(s)	86, 979
SaqAI	TTAA	4 cut(s)	35, 143, 552, 636
SatI	GCNGC	1 cut(s)	1050
Sau3AI	GATC	6 cut(s)	163, 218, 664, 760, 814, 891
SchI	GAGTC	1 cut(s)	971
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	3 cut(s)	778, 854, 861
SfaNI	GCATC	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	1014
SmlI	CTYRAG	2 cut(s)	464, 551
SmoI	CTYRAG	2 cut(s)	464, 551
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	6 cut(s)	8, 275, 318, 574, 746, 1041
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	1 cut(s)	565
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	3 cut(s)	83, 506, 630
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	915
StyI	CCWWGG	4 cut(s)	24, 259, 558, 971
TaaI	ACNGT	5 cut(s)	52, 309, 547, 677, 843
TaiI	ACGT	2 cut(s)	672, 1002
TaqI	TCGA	3 cut(s)	30, 357, 1014
TasI	AATT	6 cut(s)	8, 275, 318, 574, 746, 1041
TatI	WGTACW	1 cut(s)	978
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	4 cut(s)	35, 143, 552, 636
Tru9I	TTAA	4 cut(s)	35, 143, 552, 636
TscAI	CASTG	3 cut(s)	73, 199, 330
TseI	GCWGC	1 cut(s)	1049
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	3 cut(s)	73, 199, 330
Vha464I	CTTAAG	1 cut(s)	551
XapI	RAATTY	3 cut(s)	8, 275, 574
XbaI	TCTAGA	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	3 cut(s)	83, 506, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.