Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Reverse (-)

56434146 .. 56438832

Gene Structure 4687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0473300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2871 bp

ATGAAGAGAAGTTTGGGGAAGATAATAAGGAGGTGGAACTTGGAAGGGTGGAGAGATGCTTTAACCAAAGTGGCCAGTCTCGCTGGATGGACTTCAGAGAGTTATAGGTACGAAACACAGCTTATCAGAGAGATTGTGCAAGAACTATGGAGCAAAGTGCATACTAGTCTCACAGTATTTGGTTCCTCAGAGAAGTTAGTTGGAATGGATACTAAGTTGGAGGAAATAGATGTTCTTTTAGATAAAGAAGCAAATGATGTTCGCTTTATAGGGATATGGGGGATGGGTGGTATTGGTAAGACAACCCTTGCTAGACTAGTTTATGAGAAAGTCTCTCATCAATTTGATGTTTGCATCTTTCTTGATGATGTCAGAAAGGTTTCCGCAACCCATGGTCTAGTTGATCTACAAAAACAAATTCTTTCCCAAATCTTGAAGGAAGAAAATGTTCAAGTATGGAATGTTTATAGTGGAATAACTATGATAAAGAGATGTTTTTGTAATAAAGCGGTTCTTCTAGTTCTTGACAATGTGGATCAATCAGAGCAATTGGAAAACTTGGTGGGAGAAAAAGACTGGTTTGGTTTAAGGAGTAGAATCATCATTACAACCAGAAACCTGCGTGTACTAGTCACACATGGTATAGAAGAACCATATGAGTTGAAGGGATTAACTGAAGATGAAGCTCTTCAGCTCTTTAGTTGGAAAGCCTTTAGGAACTATGAGCCTGAAGAAGATTATGCAGAACAGTCTAAGAGTTTTGTTAGGTATGCTAGAGGTCTTCCCTTAGCTCTTAACATTTTGGGGTCTTTCTTGTACAAAAGAAGTTTAGATTCATGGAGTTCTGTATTTCAAAAACTAAAACAAACTCCCAACCCAACAGTTTTTGAAATACTGAAAGTAAGTTTTGATGGACTTGATTATATGGAGAAGAAAATTTTTCTGGACATCGCTTGTTTCCGCGGGCTGTTTCATAATGAGTCTATGATTGAACAAGTATATGGTTCCGAGTTTTGCTCTCGTATTGCAATAGATGTTCTTGTTGAGAAATCTCTCTTAAATATTTCATCATACAGCAGGATATTTATGCATGACTTGATACAAGAAATGGGATGTGAAATTGTTCGTCGAGAGAATGAAGAGCCTGGTGGACGCAGTCGGTTGTGGCTGCGCAACGACATTTTTCATGTATTCACAAAGAATACGGGAACAGAAGCCATTGAAGGCATATCGTTACACTTGTATGAATTAGAAGAGGCAGATTGGAATCTTGAAGCCTTCTCTAAAATGTGTAAACTGAAGCTGCTCTACATTCATAATTTGAGGCTTTCTCTTGGCCCAAAATATCTTCCTAATACCTTGAGATTTCTGAACTGGAGTTGGTATCCTTCAAAATCTCTCCCACCATGTTTTCAACCGGAAGAACTTACTGGACTCAGTTTGGTTCATAGTAACATTGATCACCTCTGGAATGGAATAAAATACTTAGGCAAGTTGAAATCCATCGATCTTAGTTACTCAAGAAACTTGAGAAGGACCCCAGATTTCACAGGTATTCCAAATCTTGAGAGGTTGGTTCTGGAAGGTTGTCCCAATTTAGTTAAAATTCATCCATCCATTGCATTGCTGAAGAGACTCAAAATTTGGAATTTTAGAAACTGCAGAAGTATAAAGAGTCTACCAAGTGAAGTAAATATGGAGTTTCTTGAAACATTTGATGTGTCCGGCTGCTCAAAACTGAAAATGATTCCAGAATTTTTGGGGCAAACGAAAAGATTATCAAAGCTTTGTTTAGGTGGGACTGCTGTTGAGAAACTGCCTTCATCAATTGAGCACTGCAGTGAGAGTTTGATGGAGCTTGATTTGAATGGAATTGTTATAAGAGAGCAGCCACACTCCTTTTTTCTTAAGCTGCAGAATCTCATAGTAAAATCTTTTGGCTTATTTCAAAGAAAGATTCCTCAACCTTTGATTCCTCTGGTAGCGTCCTTGAAGCAGTTCTCTTGTTTGACGACCTTAAAATTGAATGACTGTAATCTCAGTGAAGGAGAAATTCCCAATGACATTGGTTCTCTGTCCTCCTTAGAGTGGTTGGAACTCAGAGGAAACAATTTTGTTAGCCTTCCTGCAAGTATTTATTTGCTTTCTAAGCTTAAAGGTATTGATGTGGAGAATTGCAAAAGGCTTCAACAATTGCCAGAACTTCCGGCAAGTGACGACTTATGCGTGACGGCCAACAATTGTACTTCCTTACAAGTGTTTCCAGATCCACCAGATTTGCGCAGATTACGGTACTTTAACCTCACTTGCATCAATTGCTTGAGTATGGTCGGTAACCCCCTGTTATATTCAGTGTTGAAGCGGCTGCTTGAGGTAGATACTCCTGTCTCGGTTCTTATGCAGGGAACCCCTTGTTCTTTCTATTTCCGGTTTGTAATTCCTGGAAGTGAAATTCCTGAGTGGTTCAATAATCAAAGTGTGGGAGACAGGGTAACTGAGAAGTTACATTCGGATGCATGTAATATCAAGTGGATTGGGGTTGCTTTGTGTGCTGTATTTGTACCTCAAGACAATCCGTCTTCCGTTCCTGAAAACCGTCTGTTAAATCCTGATTTCTGTTTCATTTCTTGGACTTTGAACCGGGTAGGTTACAGTTTCAGTGTAAGACAAATTGTTTCAGATCACCTTTTTTTAATTGTTTTGCCCATTTTTAACTGGAAACCTGAGAACTGTCTGAAGGACACAGACATTGAGGTTGAGTTTTTCTTCGAAACCGCTCGAGCTGTAGGAAGCAACAGATGCATGAAGGTAAAGAAATGTGGGGCCCGTGTATTGTACGAGCACGAGATGGACGGGCTGGTAGTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

956

Amino Acids

109.59

Weight (kDa)

6.8

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	71 - 240	9.2e-24	NB-ARC domain
WHD_ROQ1	PF23282	310 - 377	9.3e-15	Disease resistance protein Roq1-like, winged-helix domain
LRR_13	PF23286	568 - 738	1.3e-07	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	667 - 785	1.3e-08	Leucine-rich repeat region
C-JID	PF20160	813 - 950	7.5e-12	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1880
Acc16I	TGCGCA	2 cut(s)	1172, 2282
Acc36I	ACCTGC	1 cut(s)	627
AccBSI	CCGCTC	1 cut(s)	2777
AccI	GTMKAC	1 cut(s)	1678
AccII	CGCG	1 cut(s)	963
AciI	CCGC	6 cut(s)	384, 509, 961, 963, 2362, 2775
AclWI	GGATC	2 cut(s)	543, 2261
AcoI	YGGCCR	2 cut(s)	72, 2232
AcsI	RAATTY	8 cut(s)	417, 936, 1605, 1641, 1648, 1754, 2052, 2451
AcuI	CTGAAG	7 cut(s)	78, 674, 696, 750, 1319, 1649, 2756
AfaI	GTAC	7 cut(s)	110, 627, 818, 2245, 2294, 2562, 2837
AfiI	CCNNNNNNNGG	1 cut(s)	2088
AflII	CTTAAG	1 cut(s)	1907
AhdI	GACNNNNNGTC	1 cut(s)	2575
AhlI	ACTAGT	3 cut(s)	164, 316, 628
AjnI	CCWGG	2 cut(s)	1144, 2440
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	1839
Alw21I	GWGCWC	2 cut(s)	1836, 2844
Alw26I	GTCTC	6 cut(s)	83, 173, 337, 1627, 2392, 2478
AlwI	GGATC	2 cut(s)	543, 2261
Ama87I	CYCGRG	1 cut(s)	2778
AoxI	GGCC	4 cut(s)	72, 1336, 2232, 2823
ApaI	GGGCCC	1 cut(s)	2827
ApeKI	GCWGC	6 cut(s)	1168, 1303, 1728, 1888, 1912, 2365
ApoI	RAATTY	8 cut(s)	417, 936, 1605, 1641, 1648, 1754, 2052, 2451
ArsI	GACNNNNNNTTYG	2 cut(s)	1626, 1658
Asp700I	GAANNNNTTC	5 cut(s)	379, 447, 687, 1122, 1997
AspLEI	GCGC	2 cut(s)	1173, 2283
AspS9I	GGNCC	4 cut(s)	1337, 1536, 2823, 2824
AsuC2I	CCSGG	1 cut(s)	2642
AsuHPI	GGTGA	2 cut(s)	1454, 2675
AsuII	TTCGAA	1 cut(s)	2769
AvaI	CYCGRG	1 cut(s)	2778
AvaII	GGWCC	1 cut(s)	1536
BaeGI	GKGCMC	1 cut(s)	2827
BaeI	ACNNNNGTAYC	2 cut(s)	2370, 2403
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	2827
BarI	GAAGNNNNNNTAC	2 cut(s)	1292, 1324
BauI	CACGAG	1 cut(s)	2843
BbsI	GAAGAC	2 cut(s)	773, 2571
Bbv12I	GWGCWC	2 cut(s)	1836, 2844
BbvI	GCAGC	6 cut(s)	1155, 1290, 1715, 1899, 1900, 2352
BccI	CCATC	7 cut(s)	81, 277, 905, 1511, 1621, 1846, 2842
BceAI	ACGGC	1 cut(s)	2247
BciT130I	CCWGG	2 cut(s)	1146, 2442
BciVI	GTATCC	2 cut(s)	202, 1395
BclI	TGATCA	1 cut(s)	1459
BcnI	CCSGG	1 cut(s)	2642
BcoDI	GTCTC	6 cut(s)	83, 173, 337, 1627, 2392, 2478
BcuI	ACTAGT	3 cut(s)	164, 316, 628
BfaI	CTAG	7 cut(s)	165, 312, 317, 398, 518, 629, 774
BfmI	CTRYAG	4 cut(s)	1660, 1837, 1913, 2784
BfrI	CTTAAG	1 cut(s)	1907
BfuAI	ACCTGC	1 cut(s)	627
BfuI	GTATCC	2 cut(s)	202, 1395
BisI	GCNGC	7 cut(s)	1169, 1304, 1729, 1889, 1913, 2363, 2366
BlsI	GCNGC	7 cut(s)	1170, 1305, 1730, 1890, 1914, 2364, 2367
Bme1390I	CCNGG	3 cut(s)	1146, 2442, 2642
Bme18I	GGWCC	1 cut(s)	1536
BmeRI	GACNNNNNGTC	1 cut(s)	2575
BmeT110I	CYCGRG	1 cut(s)	2778
BmgT120I	GGNCC	4 cut(s)	1337, 1536, 2823, 2824
BmiI	GGNNCC	6 cut(s)	184, 1006, 1538, 2407, 2824, 2825
BmrFI	CCNGG	3 cut(s)	1146, 2442, 2642
BmsI	GCATC	5 cut(s)	46, 363, 2319, 2503, 2789
BpiI	GAAGAC	2 cut(s)	773, 2571
BplI	GAGNNNNNCTC	6 cut(s)	317, 349, 1001, 1033, 1315, 1347
BpmI	CTGGAG	1 cut(s)	1396
Bpu10I	CCTNAGC	1 cut(s)	787
Bpu14I	TTCGAA	1 cut(s)	2769
BpuEI	CTTGAG	7 cut(s)	1381, 1504, 1549, 1586, 2341, 2390, 2550
BpuMI	CCSGG	1 cut(s)	2642
Bsa29I	ATCGAT	1 cut(s)	1506
BsaBI	GATNNNNATC	1 cut(s)	1266
BsaJI	CCNNGG	2 cut(s)	391, 961
BsaWI	WCCGGW	2 cut(s)	1417, 2427
BsaXI	ACNNNNNCTCC	2 cut(s)	2475, 2505
Bsc4I	CCNNNNNNNGG	1 cut(s)	2088
Bse1I	ACTGG	5 cut(s)	75, 581, 1379, 1435, 2720
Bse3DI	GCAATG	2 cut(s)	1617, 1622
Bse8I	GATNNNNATC	1 cut(s)	1266
BseBI	CCWGG	2 cut(s)	1146, 2442
BseCI	ATCGAT	1 cut(s)	1506
BseDI	CCNNGG	2 cut(s)	391, 961
BseGI	GGATG	6 cut(s)	92, 288, 1118, 1609, 1613, 2518
BseJI	GATNNNNATC	1 cut(s)	1266
BseLI	CCNNNNNNNGG	1 cut(s)	2088
BseMI	GCAATG	2 cut(s)	1617, 1622
BseMII	CTCAG	7 cut(s)	201, 1450, 2053, 2113, 2448, 2487, 2715
BseNI	ACTGG	5 cut(s)	75, 581, 1379, 1435, 2720
BseSI	GKGCMC	1 cut(s)	2827
BseXI	GCAGC	6 cut(s)	1155, 1290, 1715, 1899, 1900, 2352
Bsh1236I	CGCG	1 cut(s)	963
BshFI	GGCC	4 cut(s)	74, 1338, 2234, 2825
BshVI	ATCGAT	1 cut(s)	1506
BsiHKAI	GWGCWC	2 cut(s)	1836, 2844
BsiHKCI	CYCGRG	1 cut(s)	2778
BsiSI	CCGG	5 cut(s)	1418, 1725, 2207, 2428, 2641
BslFI	GGGAC	2 cut(s)	1575, 1813
BslI	CCNNNNNNNGG	1 cut(s)	2088
BsmAI	GTCTC	6 cut(s)	83, 173, 337, 1627, 2392, 2478
BsmFI	GGGAC	2 cut(s)	1575, 1813
BsnI	GGCC	4 cut(s)	74, 1338, 2234, 2825
BsoBI	CYCGRG	1 cut(s)	2778
Bsp119I	TTCGAA	1 cut(s)	2769
Bsp120I	GGGCCC	1 cut(s)	2823
Bsp1286I	GDGCHC	3 cut(s)	1836, 2827, 2844
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	6 cut(s)	403, 535, 1459, 1507, 2266, 2680
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	6 cut(s)	384, 509, 961, 963, 2362, 2775
BspANI	GGCC	4 cut(s)	74, 1338, 2234, 2825
BspCNI	CTCAG	7 cut(s)	200, 1449, 2052, 2112, 2449, 2488, 2716
BspDI	ATCGAT	1 cut(s)	1506
BspFNI	CGCG	1 cut(s)	963
BspLI	GGNNCC	6 cut(s)	184, 1006, 1538, 2407, 2824, 2825
BspMAI	CTGCAG	3 cut(s)	1664, 1841, 1917
BspMI	ACCTGC	1 cut(s)	627
BspPI	GGATC	2 cut(s)	543, 2261
BspQI	GCTCTTC	2 cut(s)	693, 1134
BspT104I	TTCGAA	1 cut(s)	2769
BspTI	CTTAAG	1 cut(s)	1907
BsrBI	CCGCTC	1 cut(s)	2777
BsrDI	GCAATG	2 cut(s)	1617, 1622
BsrGI	TGTACA	1 cut(s)	816
BsrI	ACTGG	5 cut(s)	75, 581, 1379, 1435, 2720
BssECI	CCNNGG	2 cut(s)	391, 961
BssMI	GATC	6 cut(s)	403, 535, 1459, 1507, 2266, 2680
BssSI	CACGAG	1 cut(s)	2843
BssT1I	CCWWGG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	2843
Bst2UI	CCWGG	2 cut(s)	1146, 2442
Bst4CI	ACNGT	8 cut(s)	175, 750, 883, 2033, 2292, 2597, 2654, 2732
Bst6I	CTCTTC	4 cut(s)	693, 1134, 1248, 1625
BstAFI	CTTAAG	1 cut(s)	1907
BstAPI	GCANNNNNTGC	2 cut(s)	2316, 2799
BstAUI	TGTACA	1 cut(s)	816
BstBI	TTCGAA	1 cut(s)	2769
BstC8I	GCNNGC	1 cut(s)	965
BstDSI	CCRYGG	2 cut(s)	391, 961
BstEII	GGTNACC	1 cut(s)	2333
BstF5I	GGATG	6 cut(s)	92, 288, 1118, 1609, 1613, 2518
BstFNI	CGCG	1 cut(s)	963
BstHHI	GCGC	2 cut(s)	1173, 2283
BstKTI	GATC	6 cut(s)	406, 538, 1462, 1510, 2269, 2683
BstMAI	GTCTC	6 cut(s)	83, 173, 337, 1627, 2392, 2478
BstMBI	GATC	6 cut(s)	403, 535, 1459, 1507, 2266, 2680
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 2149, 2316, 2549, 2799
BstNI	CCWGG	2 cut(s)	1146, 2442
BstNSI	RCATGY	1 cut(s)	2520
BstPI	GGTNACC	1 cut(s)	2333
BstSCI	CCNGG	3 cut(s)	1144, 2440, 2640
BstSFI	CTRYAG	4 cut(s)	1660, 1837, 1913, 2784
BstSLI	GKGCMC	1 cut(s)	2827
BstUI	CGCG	1 cut(s)	963
BstV1I	GCAGC	6 cut(s)	1155, 1290, 1715, 1899, 1900, 2352
BstV2I	GAAGAC	2 cut(s)	773, 2571
BstX2I	RGATCY	1 cut(s)	2266
BstYI	RGATCY	1 cut(s)	2266
Bsu15I	ATCGAT	1 cut(s)	1506
BsuI	GTATCC	2 cut(s)	202, 1395
BsuRI	GGCC	4 cut(s)	74, 1338, 2234, 2825
BsuTUI	ATCGAT	1 cut(s)	1506
BtgI	CCRYGG	2 cut(s)	391, 961
BtgZI	GCGATG	1 cut(s)	934
BtsCI	GGATG	6 cut(s)	92, 288, 1118, 1609, 1613, 2518
BtsI	GCAGTG	2 cut(s)	1834, 1846
BtsIMutI	CAGTG	5 cut(s)	1834, 1846, 2047, 2358, 2665
BveI	ACCTGC	1 cut(s)	627
Cac8I	GCNNGC	1 cut(s)	965
CfoI	GCGC	2 cut(s)	1173, 2283
Cfr13I	GGNCC	4 cut(s)	1337, 1536, 2823, 2824
Cfr42I	CCGCGG	1 cut(s)	964
ClaI	ATCGAT	1 cut(s)	1506
CseI	GACGC	2 cut(s)	1161, 1974
Csp6I	GTAC	7 cut(s)	109, 626, 817, 2244, 2293, 2561, 2836
CspCI	CAANNNNNGTGG	2 cut(s)	2259, 2294
CviAII	CATG	8 cut(s)	392, 638, 837, 1091, 1187, 1407, 2517, 2803
CviQI	GTAC	7 cut(s)	109, 626, 817, 2244, 2293, 2561, 2836
DpnI	GATC	6 cut(s)	405, 537, 1461, 1509, 2268, 2682
DpnII	GATC	6 cut(s)	403, 535, 1459, 1507, 2266, 2680
DriI	GACNNNNNGTC	1 cut(s)	2575
EaeI	YGGCCR	2 cut(s)	72, 2232
Eam1104I	CTCTTC	4 cut(s)	693, 1134, 1248, 1625
Eam1105I	GACNNNNNGTC	1 cut(s)	2575
EarI	CTCTTC	4 cut(s)	693, 1134, 1248, 1625
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	2827
Eco47I	GGWCC	1 cut(s)	1536
Eco57I	CTGAAG	7 cut(s)	78, 674, 696, 750, 1319, 1649, 2756
Eco88I	CYCGRG	1 cut(s)	2778
Eco91I	GGTNACC	1 cut(s)	2333
EcoO109I	RGGNCCY	2 cut(s)	1536, 2823
EcoO65I	GGTNACC	1 cut(s)	2333
EcoRII	CCWGG	2 cut(s)	1144, 2440
EcoT14I	CCWWGG	1 cut(s)	391
EcoT22I	ATGCAT	3 cut(s)	1092, 2518, 2804
EcoT38I	GRGCYC	1 cut(s)	2827
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	8 cut(s)	395, 641, 840, 1094, 1190, 1410, 2520, 2806
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	2 cut(s)	1575, 1813
FatI	CATG	8 cut(s)	391, 637, 836, 1090, 1186, 1406, 2516, 2802
FauI	CCCGC	1 cut(s)	956
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	1459
FblI	GTMKAC	1 cut(s)	1678
Fnu4HI	GCNGC	7 cut(s)	1169, 1304, 1729, 1889, 1913, 2363, 2366
FokI	GGATG	6 cut(s)	99, 295, 1125, 1596, 1600, 2525
FriOI	GRGCYC	1 cut(s)	2827
Fsp4HI	GCNGC	7 cut(s)	1169, 1304, 1729, 1889, 1913, 2363, 2366
FspBI	CTAG	7 cut(s)	165, 312, 317, 398, 518, 629, 774
FspI	TGCGCA	2 cut(s)	1172, 2282
GlaI	GCGC	2 cut(s)	1172, 2282
GluI	GCNGC	7 cut(s)	1169, 1304, 1729, 1889, 1913, 2363, 2366
GsuI	CTGGAG	1 cut(s)	1396
HaeIII	GGCC	4 cut(s)	74, 1338, 2234, 2825
HapII	CCGG	5 cut(s)	1418, 1725, 2207, 2428, 2641
HgaI	GACGC	2 cut(s)	1161, 1974
HhaI	GCGC	2 cut(s)	1173, 2283
Hin1II	CATG	8 cut(s)	395, 641, 840, 1094, 1190, 1410, 2520, 2806
Hin6I	GCGC	2 cut(s)	1171, 2281
HinP1I	GCGC	2 cut(s)	1171, 2281
HindIII	AAGCTT	2 cut(s)	1784, 2150
HpaII	CCGG	5 cut(s)	1418, 1725, 2207, 2428, 2641
HphI	GGTGA	2 cut(s)	1454, 2675
Hpy166II	GTNNAC	4 cut(s)	626, 1151, 1295, 1679
Hpy8I	GTNNAC	4 cut(s)	626, 1151, 1295, 1679
Hpy99I	CGWCG	1 cut(s)	1131
HpyCH4III	ACNGT	8 cut(s)	175, 750, 883, 2033, 2292, 2597, 2654, 2732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 2149, 2316, 2549, 2799
Hsp92II	CATG	8 cut(s)	395, 641, 840, 1094, 1190, 1410, 2520, 2806
HspAI	GCGC	2 cut(s)	1171, 2281
Ksp22I	TGATCA	1 cut(s)	1459
KspI	CCGCGG	1 cut(s)	964
Kzo9I	GATC	6 cut(s)	403, 535, 1459, 1507, 2266, 2680
LguI	GCTCTTC	2 cut(s)	693, 1134
LmnI	GCTCC	2 cut(s)	150, 1855
Lsp1109I	GCAGC	6 cut(s)	1155, 1290, 1715, 1899, 1900, 2352
LweI	GCATC	5 cut(s)	46, 363, 2319, 2503, 2789
MaeI	CTAG	7 cut(s)	165, 312, 317, 398, 518, 629, 774
MalI	GATC	6 cut(s)	405, 537, 1461, 1509, 2268, 2682
MbiI	CCGCTC	1 cut(s)	2777
MboI	GATC	6 cut(s)	403, 535, 1459, 1507, 2266, 2680
MfeI	CAATTG	5 cut(s)	548, 1827, 2192, 2239, 2314
MflI	RGATCY	1 cut(s)	2266
MhlI	GDGCHC	3 cut(s)	1836, 2827, 2844
MlsI	TGGCCA	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	4 cut(s)	989, 1428, 1629, 1684
MmeI	TCCRAC	4 cut(s)	181, 198, 683, 2073
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	3 cut(s)	1092, 2518, 2804
MroXI	GAANNNNTTC	5 cut(s)	379, 447, 687, 1122, 1997
MscI	TGGCCA	1 cut(s)	74
MslI	CAYNNNNRTG	3 cut(s)	1242, 1839, 2511
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	963
MspCI	CTTAAG	1 cut(s)	1907
MspI	CCGG	5 cut(s)	1418, 1725, 2207, 2428, 2641
MspR9I	CCNGG	3 cut(s)	1146, 2442, 2642
MunI	CAATTG	5 cut(s)	548, 1827, 2192, 2239, 2314
MvaI	CCWGG	2 cut(s)	1146, 2442
MvnI	CGCG	1 cut(s)	963
MwoI	GCNNNNNNNGC	5 cut(s)	80, 2149, 2316, 2549, 2799
NciI	CCSGG	1 cut(s)	2642
NcoI	CCATGG	1 cut(s)	391
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	6 cut(s)	403, 535, 1459, 1507, 2266, 2680
NlaIII	CATG	8 cut(s)	395, 641, 840, 1094, 1190, 1410, 2520, 2806
NlaIV	GGNNCC	6 cut(s)	184, 1006, 1538, 2407, 2824, 2825
NmuCI	GTSAC	3 cut(s)	631, 2213, 2227
NsbI	TGCGCA	2 cut(s)	1172, 2282
NsiI	ATGCAT	3 cut(s)	1092, 2518, 2804
NspI	RCATGY	1 cut(s)	2520
NspV	TTCGAA	1 cut(s)	2769
OliI	CACNNNNGTG	1 cut(s)	1839
PaeR7I	CTCGAG	1 cut(s)	2778
PciSI	GCTCTTC	2 cut(s)	693, 1134
PcsI	WCGNNNNNNNCGW	1 cut(s)	2223
PdmI	GAANNNNTTC	5 cut(s)	379, 447, 687, 1122, 1997
PfeI	GAWTC	7 cut(s)	597, 833, 1267, 1747, 1918, 1957, 1972
PflFI	GACNNNGTC	1 cut(s)	1155
PfoI	TCCNGGA	1 cut(s)	2440
PkrI	GCNGC	7 cut(s)	1170, 1305, 1730, 1890, 1914, 2364, 2367
PleI	GAGTC	4 cut(s)	988, 1428, 1629, 1683
PpsI	GAGTC	4 cut(s)	988, 1428, 1629, 1683
PpuMI	RGGWCCY	1 cut(s)	1536
PsiI	TTATAA	1 cut(s)	1880
Psp5II	RGGWCCY	1 cut(s)	1536
Psp6I	CCWGG	2 cut(s)	1144, 2440
PspEI	GGTNACC	1 cut(s)	2333
PspGI	CCWGG	2 cut(s)	1144, 2440
PspN4I	GGNNCC	6 cut(s)	184, 1006, 1538, 2407, 2824, 2825
PspOMI	GGGCCC	1 cut(s)	2823
PspPI	GGNCC	4 cut(s)	1337, 1536, 2823, 2824
PspPPI	RGGWCCY	1 cut(s)	1536
PspXI	VCTCGAGB	1 cut(s)	2778
PstI	CTGCAG	3 cut(s)	1664, 1841, 1917
PsuI	RGATCY	1 cut(s)	2266
PsyI	GACNNNGTC	1 cut(s)	1155
RsaI	GTAC	7 cut(s)	110, 627, 818, 2245, 2294, 2562, 2837
RsaNI	GTAC	7 cut(s)	109, 626, 817, 2244, 2293, 2561, 2836
RseI	CAYNNNNRTG	3 cut(s)	1242, 1839, 2511
SacII	CCGCGG	1 cut(s)	964
SapI	GCTCTTC	2 cut(s)	693, 1134
SatI	GCNGC	7 cut(s)	1169, 1304, 1729, 1889, 1913, 2363, 2366
Sau3AI	GATC	6 cut(s)	403, 535, 1459, 1507, 2266, 2680
Sau96I	GGNCC	4 cut(s)	1337, 1536, 2823, 2824
SchI	GAGTC	4 cut(s)	989, 1428, 1629, 1684
ScrFI	CCNGG	3 cut(s)	1146, 2442, 2642
SduI	GDGCHC	3 cut(s)	1836, 2827, 2844
SfaNI	GCATC	5 cut(s)	46, 363, 2319, 2503, 2789
SfcI	CTRYAG	4 cut(s)	1660, 1837, 1913, 2784
Sfr274I	CTCGAG	1 cut(s)	2778
Sfr303I	CCGCGG	1 cut(s)	964
SfuI	TTCGAA	1 cut(s)	2769
SgrBI	CCGCGG	1 cut(s)	964
SinI	GGWCC	1 cut(s)	1536
SlaI	CTCGAG	1 cut(s)	2778
SmiMI	CAYNNNNRTG	3 cut(s)	1242, 1839, 2511
SmlI	CTYRAG	9 cut(s)	1360, 1519, 1528, 1565, 1907, 2320, 2369, 2565, 2778
SmoI	CTYRAG	9 cut(s)	1360, 1519, 1528, 1565, 1907, 2320, 2369, 2565, 2778
SpeI	ACTAGT	3 cut(s)	164, 316, 628
SsiI	CCGC	6 cut(s)	384, 509, 961, 963, 2362, 2775
SspI	AATATT	1 cut(s)	1063
SspMI	CTAG	7 cut(s)	165, 312, 317, 398, 518, 629, 774
StyD4I	CCNGG	3 cut(s)	1144, 2440, 2640
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	8 cut(s)	175, 750, 883, 2033, 2292, 2597, 2654, 2732
TaqI	TCGA	4 cut(s)	1129, 1506, 2769, 2779
TatI	WGTACW	3 cut(s)	625, 816, 2243
TauI	GCSGC	1 cut(s)	2365
TfiI	GAWTC	7 cut(s)	597, 833, 1267, 1747, 1918, 1957, 1972
TscAI	CASTG	5 cut(s)	1841, 1846, 2047, 2358, 2665
TseFI	GTSAC	3 cut(s)	631, 2213, 2227
TseI	GCWGC	6 cut(s)	1168, 1303, 1728, 1888, 1912, 2365
Tsp45I	GTSAC	3 cut(s)	631, 2213, 2227
TspGWI	ACGGA	2 cut(s)	2565, 2572
TspRI	CASTG	5 cut(s)	1841, 1846, 2047, 2358, 2665
Tth111I	GACNNNGTC	1 cut(s)	1155
Vha464I	CTTAAG	1 cut(s)	1907
VpaK11BI	GGWCC	1 cut(s)	1536
XapI	RAATTY	8 cut(s)	417, 936, 1605, 1641, 1648, 1754, 2052, 2451
XceI	RCATGY	1 cut(s)	2520
XhoI	CTCGAG	1 cut(s)	2778
XmiI	GTMKAC	1 cut(s)	1678
XmnI	GAANNNNTTC	5 cut(s)	379, 447, 687, 1122, 1997
XspI	CTAG	7 cut(s)	165, 312, 317, 398, 518, 629, 774
Zsp2I	ATGCAT	3 cut(s)	1092, 2518, 2804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.