Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1437669 .. 1440128

Gene Structure 2460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1020100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGTTGTTCGGATGCAAAACTGTCCAGGAGGTGCTCATCCAAGAGGAACAGGTGCCAGAGAAATATATCCATAAAGTTGAAGATGGTGGAGTCCCAGTCCCAGATGCTTCTCCTCCCCAGTTACTGGATGTTCCAGTTATTGATCTTGCTCTCCTCGCAGCTTCTTCAATTACTGCAGATGAATATGAGAAACTCAGATCAGCTCTTGACACATTGGGTTGCTTCCAGGTAATAAACCACGGCATGTCGCCAGAATTCTTAGACGAGGTCCGAGAGATTACGAAGCAGTTTTTTGCACTACCAGTTGAAGATAAGAAGAAGTACTTGAGACAAGGCAACGACGTTCAAGGATATGGAAACGACGTGGTTTATACAGAGCAACAAAAACTGGATTGGACTGATAGACTATACCTTACTGTGTTTCCACAAGACAACCGCAAGCTCGAAGTTTGGCCTGAAAATCCCGAATCTTTTAGGCGGACTTTAGACCAACTTGTCATGGAGTTAAATGTAGTAACAAAAACTGTCCTCAAGGCCATGACAAGGTCATTGGGTTTGGAGGACAACTGCTTTTCCGACCTGTATGGGAACATGGATATCAGATTCAACTTGTATCCTCCATATCCGAGGCCTGATCTCGTCCTCGGTTTCAAATCACACTCAGACTCATCCCTAATCACCCATGTCTTGCAAGACAAGGAAGTAGAAGGTCTTCAATTTCTCAAAGGTGATGAGTGGTTTCGTGCTCCCATTGTTCCTGACGCGCTTCTCATCATAGTTGGCGACCAAGTAGAGATCTTGAGCAACGGTGCATTCAAGGGCGCTGTACACCAGGTGGTGATACATCCAGACAAGGAGAGGATATCGGTGGCGGCATTCTGCTATGGGGAGTCGTATAAAATTGAACCCTTTGAAGGGTTGGTGGATGAGTCGAGGCCAAGATTGTACAGAAAGATGGAAAATTATGGGGACATCTTTATGGAAAACTATCAGAAAGGGAGGAGAACAATTGAAGAAGCAAAAATATATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

346

Amino Acids

39.56

Weight (kDa)

4.81

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 155	2.6e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	201 - 295	2.4e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccII	CGCG	1 cut(s)	767
AciI	CCGC	3 cut(s)	439, 481, 875
AcsI	RAATTY	1 cut(s)	257
AdeI	CACNNNGTG	1 cut(s)	838
AfaI	GTAC	3 cut(s)	326, 831, 950
AfiI	CCNNNNNNNGG	4 cut(s)	127, 546, 917, 918
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	3 cut(s)	27, 228, 834
AluBI	AGCT	3 cut(s)	164, 206, 445
AluI	AGCT	3 cut(s)	164, 206, 445
Alw21I	GWGCWC	2 cut(s)	39, 751
Alw26I	GTCTC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	4 cut(s)	455, 537, 632, 938
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	2 cut(s)	769, 827
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	673, 743, 853
AvaII	GGWCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	699, 731
BbsI	GAAGAC	1 cut(s)	707
Bbv12I	GWGCWC	2 cut(s)	39, 751
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	80, 952
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	3 cut(s)	29, 230, 836
BciVI	GTATCC	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	828
BfuI	GTATCC	1 cut(s)	627
BglII	AGATCT	1 cut(s)	798
BisI	GCNGC	2 cut(s)	162, 876
BlsI	GCNGC	2 cut(s)	163, 877
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	3 cut(s)	29, 230, 836
Bme18I	GGWCC	1 cut(s)	271
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	3 cut(s)	29, 230, 836
BmrI	ACTGGG	2 cut(s)	92, 115
BmsI	GCATC	2 cut(s)	5, 97
BmuI	ACTGGG	2 cut(s)	92, 115
BpiI	GAAGAC	1 cut(s)	707
BpuEI	CTTGAG	3 cut(s)	349, 518, 823
BsaJI	CCNNGG	3 cut(s)	241, 629, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 546, 917, 918
Bse1I	ACTGG	6 cut(s)	98, 121, 132, 137, 305, 396
BseBI	CCWGG	3 cut(s)	29, 230, 836
BseDI	CCNNGG	3 cut(s)	241, 629, 646
BseGI	GGATG	6 cut(s)	20, 39, 136, 671, 847, 934
BseLI	CCNNNNNNNGG	4 cut(s)	127, 546, 917, 918
BseMII	CTCAG	2 cut(s)	211, 678
BseNI	ACTGG	6 cut(s)	98, 121, 132, 137, 305, 396
BseRI	GAGGAG	3 cut(s)	105, 146, 1018
BseXI	GCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	4 cut(s)	457, 539, 634, 940
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	39, 751
BslFI	GGGAC	3 cut(s)	80, 86, 986
BslI	CCNNNNNNNGG	4 cut(s)	127, 546, 917, 918
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	3 cut(s)	80, 86, 986
BsmI	GAATGC	2 cut(s)	815, 878
BsnI	GGCC	4 cut(s)	457, 539, 634, 940
Bsp1286I	GDGCHC	2 cut(s)	39, 751
Bsp1407I	TGTACA	2 cut(s)	829, 948
Bsp143I	GATC	4 cut(s)	145, 200, 637, 798
BspACI	CCGC	3 cut(s)	439, 481, 875
BspANI	GGCC	4 cut(s)	457, 539, 634, 940
BspCNI	CTCAG	2 cut(s)	210, 677
BspFNI	CGCG	1 cut(s)	767
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	55
BsrGI	TGTACA	2 cut(s)	829, 948
BsrI	ACTGG	6 cut(s)	98, 121, 132, 137, 305, 396
BssECI	CCNNGG	3 cut(s)	241, 629, 646
BssMI	GATC	4 cut(s)	145, 200, 637, 798
Bst2UI	CCWGG	3 cut(s)	29, 230, 836
Bst4CI	ACNGT	4 cut(s)	25, 421, 529, 812
BstAUI	TGTACA	2 cut(s)	829, 948
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	3 cut(s)	197, 262, 664
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	6 cut(s)	20, 39, 136, 671, 847, 934
BstFNI	CGCG	1 cut(s)	767
BstH2I	RGCGCY	1 cut(s)	828
BstHHI	GCGC	2 cut(s)	769, 827
BstKTI	GATC	4 cut(s)	148, 203, 640, 801
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	145, 200, 637, 798
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	3 cut(s)	29, 230, 836
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	3 cut(s)	27, 228, 834
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	798
BsuI	GTATCC	1 cut(s)	627
BsuRI	GGCC	4 cut(s)	457, 539, 634, 940
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	6 cut(s)	20, 39, 136, 671, 847, 934
Cac8I	GCNNGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	2 cut(s)	769, 827
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	773
CsiI	ACCWGGT	1 cut(s)	834
Csp6I	GTAC	3 cut(s)	325, 830, 949
CviAII	CATG	5 cut(s)	247, 502, 541, 595, 686
CviJI	RGCY	7 cut(s)	164, 206, 445, 457, 539, 634, 940
CviKI_1	RGCY	7 cut(s)	164, 206, 445, 457, 539, 634, 940
CviQI	GTAC	3 cut(s)	325, 830, 949
DdeI	CTNAG	3 cut(s)	197, 262, 664
DpnI	GATC	4 cut(s)	147, 202, 639, 800
DpnII	GATC	4 cut(s)	145, 200, 637, 798
DraIII	CACNNNGTG	1 cut(s)	838
DrdI	GACNNNNNNGTC	1 cut(s)	497
DseDI	GACNNNNNNGTC	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	496
Eco147I	AGGCCT	1 cut(s)	634
Eco32I	GATATC	2 cut(s)	601, 867
Eco47I	GGWCC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	27, 228, 834
EcoRV	GATATC	2 cut(s)	601, 867
FaeI	CATG	5 cut(s)	250, 505, 544, 598, 689
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	3 cut(s)	80, 86, 986
FatI	CATG	5 cut(s)	246, 501, 540, 594, 685
Fnu4HI	GCNGC	2 cut(s)	162, 876
FokI	GGATG	6 cut(s)	26, 27, 143, 658, 834, 941
Fsp4HI	GCNGC	2 cut(s)	162, 876
GlaI	GCGC	2 cut(s)	768, 826
GluI	GCNGC	2 cut(s)	162, 876
HaeII	RGCGCY	1 cut(s)	828
HaeIII	GGCC	4 cut(s)	457, 539, 634, 940
HgaI	GACGC	1 cut(s)	773
HhaI	GCGC	2 cut(s)	769, 827
Hin1II	CATG	5 cut(s)	250, 505, 544, 598, 689
Hin6I	GCGC	2 cut(s)	767, 825
HinP1I	GCGC	2 cut(s)	767, 825
HinfI	GANTC	6 cut(s)	93, 470, 606, 668, 893, 932
HphI	GGTGA	3 cut(s)	673, 743, 853
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	8 cut(s)	14, 200, 275, 580, 605, 630, 667, 996
Hpy188III	TCNNGA	5 cut(s)	209, 467, 761, 802, 851
Hpy8I	GTNNAC	1 cut(s)	832
Hpy99I	CGWCG	2 cut(s)	347, 368
HpyAV	CCTTC	2 cut(s)	704, 911
HpyCH4III	ACNGT	4 cut(s)	25, 421, 529, 812
HpyCH4IV	ACGT	2 cut(s)	345, 366
HpyCH4V	TGCA	5 cut(s)	18, 179, 299, 694, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	197, 262, 664
HpySE526I	ACGT	2 cut(s)	345, 366
Hsp92II	CATG	5 cut(s)	250, 505, 544, 598, 689
HspAI	GCGC	2 cut(s)	767, 825
Kzo9I	GATC	4 cut(s)	145, 200, 637, 798
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	2 cut(s)	5, 97
MabI	ACCWGGT	1 cut(s)	834
MaeII	ACGT	2 cut(s)	345, 366
MaeIII	GTNAC	2 cut(s)	123, 517
MalI	GATC	4 cut(s)	147, 202, 639, 800
MboI	GATC	4 cut(s)	145, 200, 637, 798
MboII	GAAGA	6 cut(s)	95, 159, 323, 331, 707, 1028
MfeI	CAATTG	1 cut(s)	1011
MflI	RGATCY	1 cut(s)	798
MhlI	GDGCHC	2 cut(s)	39, 751
MluCI	AATT	6 cut(s)	171, 257, 719, 903, 964, 1011
MlyI	GAGTC	4 cut(s)	102, 662, 902, 941
MmeI	TCCRAC	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	980
MspR9I	CCNGG	3 cut(s)	29, 230, 836
MunI	CAATTG	1 cut(s)	1011
Mva1269I	GAATGC	2 cut(s)	815, 878
MvaI	CCWGG	3 cut(s)	29, 230, 836
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	4 cut(s)	145, 200, 637, 798
NlaIII	CATG	5 cut(s)	250, 505, 544, 598, 689
NlaIV	GGNNCC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	634
PctI	GAATGC	2 cut(s)	815, 878
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	470, 606
PflFI	GACNNNGTC	2 cut(s)	269, 547
PflMI	CCANNNNNTGG	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	163, 877
PleI	GAGTC	4 cut(s)	101, 662, 901, 940
PpsI	GAGTC	4 cut(s)	101, 662, 901, 940
Psp6I	CCWGG	3 cut(s)	27, 228, 834
PspGI	CCWGG	3 cut(s)	27, 228, 834
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	798
PsyI	GACNNNGTC	2 cut(s)	269, 547
RsaI	GTAC	3 cut(s)	326, 831, 950
RsaNI	GTAC	3 cut(s)	325, 830, 949
RseI	CAYNNNNRTG	1 cut(s)	980
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	2 cut(s)	162, 876
Sau3AI	GATC	4 cut(s)	145, 200, 637, 798
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	4 cut(s)	102, 662, 902, 941
ScrFI	CCNGG	3 cut(s)	29, 230, 836
SduI	GDGCHC	2 cut(s)	39, 751
SexAI	ACCWGGT	1 cut(s)	834
SfaNI	GCATC	2 cut(s)	5, 97
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	980
SmlI	CTYRAG	3 cut(s)	328, 533, 802
SmoI	CTYRAG	3 cut(s)	328, 533, 802
Sse9I	AATT	6 cut(s)	171, 257, 719, 903, 964, 1011
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	3 cut(s)	439, 481, 875
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	3 cut(s)	27, 228, 834
TaaI	ACNGT	4 cut(s)	25, 421, 529, 812
TaiI	ACGT	2 cut(s)	348, 369
TaqI	TCGA	2 cut(s)	447, 935
TasI	AATT	6 cut(s)	171, 257, 719, 903, 964, 1011
TatI	WGTACW	3 cut(s)	324, 829, 948
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	2 cut(s)	470, 606
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	198
Tth111I	GACNNNGTC	2 cut(s)	269, 547
Van91I	CCANNNNNTGG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	714
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.