Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

1045482 .. 1047149

Gene Structure 1668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGTTATTAGGATCGAAAACTGTCCAGGAGGTGCTCATCCAAGGGGAACAGGTGCCAGAGAAATATATCCATAAAGTTGAAGATGGTGGAGTCCCAGTCCCGGATGCTTCTGCTGCCCAATTGATGGATGTTCCAGTTATTGCGCTTCAGGATCTTGCTCTCCTCGCAGCTTCTTCAATCTCTGCCGATGAACTTGAGAAGCTCAGATCAGCTCTTGCCACATGGGGTTGCTTCCAGGTAATAAACCACGGTATGTCGCCGGAATTCCTAGACGAGTTCCGAGAGATTACAAAGCAGTTTTTTGCACTTCCAGTGGAAGATAAGAAGAAGTACTTGAGACAAGTCAACGACATTCAAGGATATGGAAACGACATGGTTTTTTCAGAGCAACAAACACTGGATTGGAGTGATAGACTATACCTTTCTGTGTATCCACAAGACAACCGTAAGCTCAACTTGTGGCCTGAAAACCCCAAATCTTTTAGGCAGACTTTAGACCAATATACCATGGACTTGCAAGTGGTAACAAAAACTGTCCTCAAGGCCATGGCAAGGTCATTGGATTTGGAGGACAATTGCTTTTCCGACCTGTATGGGGGAGAACAAGGGAAAATGGACATCAGATTTAACTTTTATCCTCCATGTCCAAGGCCTGATCTCGTCCTTGGTGTCAAACCACACGCAGACGGAACCCTAATCACCCTTCTCTTGCAAGACAAGGAAGTTGAAGGTCTTCAATTTCTCAAAGGTGATGAGTGGTTTCGAGCTCCCATTGTTCCTGATGCGCTTCTCATCAACGTTGGTGATCAAGTGGAGATACTGAGCAATGGAATATTCAAGAGCCCTGTACACAAGGTGGTGACAAATTCCGACAAGGAGAGGATATCGGTGGCGGCCTTCTGCATACCAGAGTCGGATAAAGAGATTGAACCTTTTGAAAGCAAGGGAGGAGACCAATGGAAGCAGCAAAAATGTAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

329

Amino Acids

37.04

Weight (kDa)

4.72

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	127
AciI	CCGC	1 cut(s)	896
AclI	AACGTT	1 cut(s)	801
AclWI	GGATC	2 cut(s)	22, 162
AcsI	RAATTY	2 cut(s)	266, 868
AcuI	CTGAAG	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	859
AfaI	GTAC	2 cut(s)	335, 852
AfiI	CCNNNNNNNGG	4 cut(s)	103, 127, 555, 598
AgsI	TTSAA	8 cut(s)	83, 180, 359, 731, 740, 841, 932, 941
AjnI	CCWGG	2 cut(s)	27, 237
AluBI	AGCT	5 cut(s)	173, 205, 215, 454, 770
AluI	AGCT	5 cut(s)	173, 205, 215, 454, 770
Alw21I	GWGCWC	2 cut(s)	39, 772
Alw26I	GTCTC	2 cut(s)	334, 948
AlwI	GGATC	2 cut(s)	22, 162
AoxI	GGCC	4 cut(s)	464, 546, 653, 897
ApeKI	GCWGC	3 cut(s)	116, 170, 967
ApoI	RAATTY	2 cut(s)	266, 868
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	148, 790
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	4 cut(s)	694, 764, 818, 874
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	772, 848
BbsI	GAAGAC	1 cut(s)	728
Bbv12I	GWGCWC	2 cut(s)	39, 772
BbvI	GCAGC	3 cut(s)	103, 182, 979
BccI	CCATC	2 cut(s)	80, 121
BciT130I	CCWGG	2 cut(s)	29, 239
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	334, 948
BfaI	CTAG	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	4 cut(s)	117, 171, 897, 968
BlsI	GCNGC	4 cut(s)	118, 172, 898, 969
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	3 cut(s)	29, 104, 239
BmiI	GGNNCC	2 cut(s)	57, 694
BmrFI	CCNGG	3 cut(s)	29, 104, 239
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	97, 775
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	728
BpuEI	CTTGAG	3 cut(s)	218, 358, 527
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	948
BsaJI	CCNNGG	6 cut(s)	43, 250, 510, 549, 650, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 127, 555, 598
Bse1I	ACTGG	4 cut(s)	98, 137, 314, 405
Bse3DI	GCAATG	1 cut(s)	835
BseBI	CCWGG	2 cut(s)	29, 239
BseDI	CCNNGG	6 cut(s)	43, 250, 510, 549, 650, 667
BseGI	GGATG	3 cut(s)	39, 112, 136
BseLI	CCNNNNNNNGG	4 cut(s)	103, 127, 555, 598
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	2 cut(s)	220, 815
BseNI	ACTGG	4 cut(s)	98, 137, 314, 405
BseRI	GAGGAG	2 cut(s)	155, 966
BseXI	GCAGC	3 cut(s)	103, 182, 979
BshFI	GGCC	4 cut(s)	466, 548, 655, 899
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	39, 772
BsiSI	CCGG	2 cut(s)	104, 263
BslFI	GGGAC	2 cut(s)	80, 86
BslI	CCNNNNNNNGG	4 cut(s)	103, 127, 555, 598
BsmAI	GTCTC	2 cut(s)	334, 948
BsmFI	GGGAC	2 cut(s)	80, 86
BsnI	GGCC	4 cut(s)	466, 548, 655, 899
Bso31I	GGTCTC	1 cut(s)	948
Bsp1286I	GDGCHC	3 cut(s)	39, 772, 848
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	14, 154, 209, 658, 808
Bsp19I	CCATGG	2 cut(s)	510, 549
BspACI	CCGC	1 cut(s)	896
BspANI	GGCC	4 cut(s)	466, 548, 655, 899
BspCNI	CTCAG	2 cut(s)	219, 816
BspLI	GGNNCC	2 cut(s)	57, 694
BspPI	GGATC	2 cut(s)	22, 162
BspT107I	GGYRCC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	948
BsrDI	GCAATG	1 cut(s)	835
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	4 cut(s)	98, 137, 314, 405
BssECI	CCNNGG	6 cut(s)	43, 250, 510, 549, 650, 667
BssMI	GATC	5 cut(s)	14, 154, 209, 658, 808
BssT1I	CCWWGG	5 cut(s)	43, 510, 549, 650, 667
Bst2UI	CCWGG	2 cut(s)	29, 239
Bst4CI	ACNGT	4 cut(s)	25, 254, 449, 538
BstAUI	TGTACA	1 cut(s)	850
BstDEI	CTNAG	2 cut(s)	206, 824
BstDSI	CCRYGG	3 cut(s)	250, 510, 549
BstF5I	GGATG	3 cut(s)	39, 112, 136
BstHHI	GCGC	2 cut(s)	148, 790
BstKTI	GATC	5 cut(s)	17, 157, 212, 661, 811
BstMAI	GTCTC	2 cut(s)	334, 948
BstMBI	GATC	5 cut(s)	14, 154, 209, 658, 808
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 167
BstNI	CCWGG	2 cut(s)	29, 239
BstSCI	CCNGG	3 cut(s)	27, 102, 237
BstV1I	GCAGC	3 cut(s)	103, 182, 979
BstV2I	GAAGAC	1 cut(s)	728
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	466, 548, 655, 899
BtgI	CCRYGG	3 cut(s)	250, 510, 549
BtsCI	GGATG	3 cut(s)	39, 112, 136
BtsIMutI	CAGTG	2 cut(s)	321, 398
CfoI	GCGC	2 cut(s)	148, 790
Csp6I	GTAC	2 cut(s)	334, 851
CviAII	CATG	5 cut(s)	225, 376, 511, 550, 645
CviQI	GTAC	2 cut(s)	334, 851
DdeI	CTNAG	2 cut(s)	206, 824
DpnI	GATC	5 cut(s)	16, 156, 211, 660, 810
DpnII	GATC	5 cut(s)	14, 154, 209, 658, 808
DraIII	CACNNNGTG	1 cut(s)	859
Ecl136II	GAGCTC	1 cut(s)	770
Eco130I	CCWWGG	5 cut(s)	43, 510, 549, 650, 667
Eco147I	AGGCCT	1 cut(s)	655
Eco24I	GRGCYC	2 cut(s)	772, 848
Eco31I	GGTCTC	1 cut(s)	948
Eco32I	GATATC	1 cut(s)	888
Eco53kI	GAGCTC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	770
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	27, 237
EcoRV	GATATC	1 cut(s)	888
EcoT14I	CCWWGG	5 cut(s)	43, 510, 549, 650, 667
EcoT38I	GRGCYC	2 cut(s)	772, 848
ErhI	CCWWGG	5 cut(s)	43, 510, 549, 650, 667
FaeI	CATG	5 cut(s)	228, 379, 514, 553, 648
FalI	AAGNNNNNCTT	4 cut(s)	320, 352, 443, 475
FaqI	GGGAC	2 cut(s)	80, 86
FatI	CATG	5 cut(s)	224, 375, 510, 549, 644
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	4 cut(s)	117, 171, 897, 968
FokI	GGATG	3 cut(s)	26, 119, 143
FriOI	GRGCYC	2 cut(s)	772, 848
Fsp4HI	GCNGC	4 cut(s)	117, 171, 897, 968
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	2 cut(s)	147, 789
GluI	GCNGC	4 cut(s)	117, 171, 897, 968
HaeIII	GGCC	4 cut(s)	466, 548, 655, 899
HapII	CCGG	2 cut(s)	104, 263
HhaI	GCGC	2 cut(s)	148, 790
Hin1II	CATG	5 cut(s)	228, 379, 514, 553, 648
Hin6I	GCGC	2 cut(s)	146, 788
HinP1I	GCGC	2 cut(s)	146, 788
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	93, 914
HpaII	CCGG	2 cut(s)	104, 263
HphI	GGTGA	4 cut(s)	694, 764, 818, 874
Hpy166II	GTNNAC	2 cut(s)	349, 853
Hpy188I	TCNGA	7 cut(s)	209, 284, 388, 589, 626, 874, 919
Hpy188III	TCNNGA	3 cut(s)	152, 782, 841
Hpy8I	GTNNAC	2 cut(s)	349, 853
HpyAV	CCTTC	3 cut(s)	716, 725, 910
HpyCH4III	ACNGT	4 cut(s)	25, 254, 449, 538
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	4 cut(s)	308, 520, 715, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 167
HpyF3I	CTNAG	2 cut(s)	206, 824
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	5 cut(s)	228, 379, 514, 553, 648
HspAI	GCGC	2 cut(s)	146, 788
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	5 cut(s)	14, 154, 209, 658, 808
LmnI	GCTCC	1 cut(s)	775
Lsp1109I	GCAGC	3 cut(s)	103, 182, 979
LweI	GCATC	2 cut(s)	97, 775
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	2 cut(s)	526, 862
MalI	GATC	5 cut(s)	16, 156, 211, 660, 810
MboI	GATC	5 cut(s)	14, 154, 209, 658, 808
MboII	GAAGA	5 cut(s)	95, 168, 332, 340, 728
MfeI	CAATTG	2 cut(s)	122, 577
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	39, 772, 848
MluCI	AATT	5 cut(s)	122, 266, 577, 740, 868
MlyI	GAGTC	2 cut(s)	102, 923
MmeI	TCCRAC	3 cut(s)	612, 897, 897
MnlI	CCTC	7 cut(s)	25, 176, 551, 565, 651, 876, 944
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	1 cut(s)	630
MspI	CCGG	2 cut(s)	104, 263
MspR9I	CCNGG	3 cut(s)	29, 104, 239
MunI	CAATTG	2 cut(s)	122, 577
MvaI	CCWGG	2 cut(s)	29, 239
MwoI	GCNNNNNNNGC	2 cut(s)	116, 167
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	2 cut(s)	510, 549
NdeII	GATC	5 cut(s)	14, 154, 209, 658, 808
NlaIII	CATG	5 cut(s)	228, 379, 514, 553, 648
NlaIV	GGNNCC	2 cut(s)	57, 694
NmuCI	GTSAC	1 cut(s)	862
PceI	AGGCCT	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	735
PflMI	CCANNNNNTGG	1 cut(s)	127
PfoI	TCCNGGA	2 cut(s)	27, 102
PkrI	GCNGC	4 cut(s)	118, 172, 898, 969
PleI	GAGTC	2 cut(s)	101, 922
PpsI	GAGTC	2 cut(s)	101, 922
Psp124BI	GAGCTC	1 cut(s)	772
Psp1406I	AACGTT	1 cut(s)	801
Psp6I	CCWGG	2 cut(s)	27, 237
PspGI	CCWGG	2 cut(s)	27, 237
PspN4I	GGNNCC	2 cut(s)	57, 694
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	335, 852
RsaNI	GTAC	2 cut(s)	334, 851
SacI	GAGCTC	1 cut(s)	772
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	4 cut(s)	117, 171, 897, 968
Sau3AI	GATC	5 cut(s)	14, 154, 209, 658, 808
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	2 cut(s)	102, 923
ScrFI	CCNGG	3 cut(s)	29, 104, 239
SduI	GDGCHC	3 cut(s)	39, 772, 848
SfaNI	GCATC	2 cut(s)	97, 775
SmlI	CTYRAG	3 cut(s)	197, 337, 542
SmoI	CTYRAG	3 cut(s)	197, 337, 542
Sse9I	AATT	5 cut(s)	122, 266, 577, 740, 868
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	1 cut(s)	896
SspI	AATATT	1 cut(s)	837
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	772
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	3 cut(s)	27, 102, 237
StyI	CCWWGG	5 cut(s)	43, 510, 549, 650, 667
TaaI	ACNGT	4 cut(s)	25, 254, 449, 538
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	2 cut(s)	17, 766
TasI	AATT	5 cut(s)	122, 266, 577, 740, 868
TatI	WGTACW	2 cut(s)	333, 850
TauI	GCSGC	1 cut(s)	899
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	2 cut(s)	321, 405
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	3 cut(s)	116, 170, 967
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	321, 405
Van91I	CCANNNNNTGG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	266, 868
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.