Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001429

Physical Location & Seq

Genomic Coordinates Forward (+)

6894726 .. 6896350

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCTGGCGAAGGACTGCCGGAGAGATATCTCCACGCACCCACCGGAGACGGCGAAGTTCAACCTCTTAACGCAGCGGTACCGGAGATGGATATTCCGGCCATCGATCTGAATCTTCTCCTCTCTTCTTCTGAAGCTGGTCAACAAGAGCTGAGTAAACTTCACTCGGCACTCTCTACATGGGGCGTTGTTCAGGTGATGAATCATGGAATTACAAAAGCGTTTCTTGACAAGATTTACAAGCTAACCAAGGAGTTCTTTGCGCTTCCGACCGAAGAGAAACAGAAGTGCGCGAGAGAGATTGATAGTATCCAAGGATATGGTAACGACATGATTCTTTGGGATGATCAAGTTCTTGATTGGATCGACCGTTTGTATATTACTACTTACCCTGAAGATCAAAGACAACTTAATTTCTGGCCTGAAGTCCCACTTGGATTCAGGGAAACTTTACATGAATACACAATGAAGCAACGGATAGTGATTGAGCAATTTTTTAAGGCCATGGCTAGATCTTTGGAATTAGAAGAGAATAGTTTTCTAGACATGTATGGAGAAAGTGCTACGTTGGATACTAGATTCAACATGTATCCACCATGTCCGAGCCCGGACAAGGTTATTGGTGTTAAACCGCACGCTGATGGCTCGGCTATCACTCTTCTCTTACCCGACAAAGATGTCGGAGGGCTTCAGTTCCAGAAAGATGGGAAGTGGTATAAAGCTCCTATAGTCCCTGATACAATTTTGATCAATGTTGGTGATCAAATGGAGATAATGAGCAATGGGATATACAAGAGCCCGGTTCATAGAGTGGTGACTAACAGAGAAAAGGAAAGAATATCTGTGGCAACTTTTTGCATTCCAGGTGCAGATAAAGAGATTCAGCCTGTGAATGAGCTTGTGTCTGAGGCAAGACCAAGATTATATAAAACAGTTAAGAAGTATGTGGAGCTCTACTTCAAGTACTATCAACAAGGCCGAAGACCTATTGAAGCTGCATTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

348

Amino Acids

39.68

Weight (kDa)

5.27

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 155	3.7e-28	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	206 - 301	8e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49390 AT1G49390 AT5G20400 AT5G20550 AT5G54000 AT5G54000
fragaria_vesca	FvH4_1g02121 FvH4_1g02150 FvH4_1g02151 FvH4_1g02152 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160 FvH4_1g02160
malus_domestica	MD02G1019700.v1.1 MD02G1020000.v1.1 MD02G1020100.v1.1 MD14G1108700.v1.1 MD14G1108800.v1.1
prunus_persica	Prupe.4G248100_v2.0.a1 Prupe.4G248200_v2.0.a1 Prupe.4G248300_v2.0.a1 Prupe.4G248400_v2.0.a1 Prupe.4G248600_v2.0.a1
pyrus_communis	pycom02g01750 pycom02g01760
rosa_chinensis	RchiOBHm_Chr2g0087201 RchiOBHm_Chr2g0087211 RchiOBHm_Chr2g0087231 RchiOBHm_Chr2g0087261
rosa_laevigata	RLG00000015844 RLG00000015846 RLG00000015848
rosa_multiflora	Rmu_co8425197.1_g000001 Rmu_co8475215.1_g000001 Rmu_sc0003367.1_g000009 Rmu_sc0003367.1_g000015 Rmu_sc0018794.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153770 Rroxscaffold_2G00153780 Rroxscaffold_2G00153810
rosa_rugosa	Rorug01G0473300 Rorug01G0473600
rosa_samantha	Rh2AG026600 Rh2AG026900 Rh2AG027100 Rh2BG026400 Rh2DG026700 Rh2DG026900 Rh2DG027100
rosa_wichuraiana	Rw2G002120 Rw2G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	116, 671
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	4 cut(s)	192, 453, 483, 713
AfaI	GTAC	2 cut(s)	120, 1004
AfiI	CCNNNNNNNGG	2 cut(s)	34, 652
AflIII	ACRYGT	2 cut(s)	585, 624
AgsI	TTSAA	5 cut(s)	19, 101, 622, 1000, 1031
AjnI	CCWGG	1 cut(s)	901
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	8 cut(s)	44, 176, 190, 283, 761, 937, 991, 1034
AluI	AGCT	8 cut(s)	44, 176, 190, 283, 761, 937, 991, 1034
Alw21I	GWGCWC	1 cut(s)	993
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	4 cut(s)	138, 458, 540, 1015
ApeKI	GCWGC	3 cut(s)	41, 113, 1034
Asp718I	GGTACC	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	304, 332
AsuC2I	CCSGG	2 cut(s)	647, 839
AsuHPI	GGTGA	3 cut(s)	247, 809, 865
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	3 cut(s)	647, 839, 993
BbsI	GAAGAC	1 cut(s)	1027
Bbv12I	GWGCWC	1 cut(s)	993
BbvI	GCAGC	3 cut(s)	53, 125, 1021
BccI	CCATC	4 cut(s)	121, 149, 674, 737
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	3 cut(s)	359, 604, 639
BclI	TGATCA	3 cut(s)	385, 786, 799
BcnI	CCSGG	2 cut(s)	647, 839
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	3 cut(s)	549, 581, 615
BfmI	CTRYAG	1 cut(s)	765
BfuI	GTATCC	3 cut(s)	359, 604, 639
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	3 cut(s)	42, 114, 1035
BlsI	GCNGC	3 cut(s)	43, 115, 1036
BmcAI	AGTACT	1 cut(s)	1004
Bme1390I	CCNGG	3 cut(s)	647, 839, 903
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	3 cut(s)	647, 839, 903
BpiI	GAAGAC	1 cut(s)	1027
BpuMI	CCSGG	2 cut(s)	647, 839
Bsa29I	ATCGAT	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	288, 352, 543
BsaWI	WCCGGW	2 cut(s)	83, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 652
Bse3DI	GCAATG	1 cut(s)	826
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	903
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	288, 352, 543
BseGI	GGATG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	34, 652
BseMI	GCAATG	1 cut(s)	826
BseMII	CTCAG	2 cut(s)	182, 936
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	3 cut(s)	53, 125, 1021
BsgI	GTGCAG	1 cut(s)	927
Bsh1236I	CGCG	1 cut(s)	332
Bsh1285I	CGRYCG	2 cut(s)	312, 409
BshFI	GGCC	4 cut(s)	140, 460, 542, 1017
BshNI	GGYRCC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	144
BsiEI	CGRYCG	2 cut(s)	312, 409
BsiHKAI	GWGCWC	1 cut(s)	993
BsiSI	CCGG	6 cut(s)	59, 84, 122, 137, 647, 839
BslFI	GGGAC	2 cut(s)	452, 755
BslI	CCNNNNNNNGG	2 cut(s)	34, 652
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	2 cut(s)	452, 755
BsmI	GAATGC	1 cut(s)	897
BsnI	GGCC	4 cut(s)	140, 460, 542, 1017
Bsp1286I	GDGCHC	3 cut(s)	647, 839, 993
Bsp143I	GATC	8 cut(s)	145, 385, 402, 436, 551, 786, 799, 1041
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	2 cut(s)	116, 671
BspANI	GGCC	4 cut(s)	140, 460, 542, 1017
BspCNI	CTCAG	2 cut(s)	183, 937
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	826
BssECI	CCNNGG	3 cut(s)	288, 352, 543
BssMI	GATC	8 cut(s)	145, 385, 402, 436, 551, 786, 799, 1041
BssT1I	CCWWGG	3 cut(s)	288, 352, 543
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	3 cut(s)	25, 410, 973
Bst6I	CTCTTC	4 cut(s)	169, 309, 561, 702
BstC8I	GCNNGC	2 cut(s)	46, 675
BstDEI	CTNAG	2 cut(s)	191, 945
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	304, 332
BstKTI	GATC	8 cut(s)	148, 388, 405, 439, 554, 789, 802, 1044
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	8 cut(s)	145, 385, 402, 436, 551, 786, 799, 1041
BstMCI	CGRYCG	2 cut(s)	312, 409
BstNI	CCWGG	1 cut(s)	903
BstNSI	RCATGY	2 cut(s)	589, 628
BstSCI	CCNGG	3 cut(s)	645, 837, 901
BstSFI	CTRYAG	1 cut(s)	765
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	53, 125, 1021
BstV2I	GAAGAC	1 cut(s)	1027
BstX2I	RGATCY	1 cut(s)	551
BstXI	CCANNNNNNTGG	2 cut(s)	359, 743
BstYI	RGATCY	1 cut(s)	551
Bsu15I	ATCGAT	1 cut(s)	144
BsuI	GTATCC	3 cut(s)	359, 604, 639
BsuRI	GGCC	4 cut(s)	140, 460, 542, 1017
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	46, 675
CfoI	GCGC	2 cut(s)	304, 332
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	119, 1003
CviAII	CATG	8 cut(s)	219, 245, 370, 494, 544, 586, 625, 636
CviQI	GTAC	2 cut(s)	119, 1003
DdeI	CTNAG	2 cut(s)	191, 945
DpnI	GATC	8 cut(s)	147, 387, 404, 438, 553, 788, 801, 1043
DpnII	GATC	8 cut(s)	145, 385, 402, 436, 551, 786, 799, 1041
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	4 cut(s)	169, 309, 561, 702
EarI	CTCTTC	4 cut(s)	169, 309, 561, 702
Ecl136II	GAGCTC	1 cut(s)	991
Eco130I	CCWWGG	3 cut(s)	288, 352, 543
Eco24I	GRGCYC	3 cut(s)	647, 839, 993
Eco32I	GATATC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	991
Eco57I	CTGAAG	4 cut(s)	192, 453, 483, 713
EcoICRI	GAGCTC	1 cut(s)	991
EcoRII	CCWGG	1 cut(s)	901
EcoRV	GATATC	1 cut(s)	68
EcoT14I	CCWWGG	3 cut(s)	288, 352, 543
EcoT38I	GRGCYC	3 cut(s)	647, 839, 993
ErhI	CCWWGG	3 cut(s)	288, 352, 543
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	8 cut(s)	222, 248, 373, 497, 547, 589, 628, 639
FalI	AAGNNNNNCTT	6 cut(s)	249, 281, 281, 313, 456, 488
FaqI	GGGAC	2 cut(s)	452, 755
FatI	CATG	8 cut(s)	218, 244, 369, 493, 543, 585, 624, 635
FbaI	TGATCA	3 cut(s)	385, 786, 799
Fnu4HI	GCNGC	3 cut(s)	42, 114, 1035
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	3 cut(s)	647, 839, 993
Fsp4HI	GCNGC	3 cut(s)	42, 114, 1035
FspBI	CTAG	3 cut(s)	549, 581, 615
GlaI	GCGC	2 cut(s)	303, 331
GluI	GCNGC	3 cut(s)	42, 114, 1035
HaeIII	GGCC	4 cut(s)	140, 460, 542, 1017
HapII	CCGG	6 cut(s)	59, 84, 122, 137, 647, 839
HhaI	GCGC	2 cut(s)	304, 332
Hin1II	CATG	8 cut(s)	222, 248, 373, 497, 547, 589, 628, 639
Hin6I	GCGC	2 cut(s)	302, 330
HinP1I	GCGC	2 cut(s)	302, 330
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HinfI	GANTC	6 cut(s)	151, 241, 373, 477, 618, 919
HpaII	CCGG	6 cut(s)	59, 84, 122, 137, 647, 839
HphI	GGTGA	3 cut(s)	247, 809, 865
Hpy166II	GTNNAC	2 cut(s)	182, 197
Hpy188I	TCNGA	7 cut(s)	150, 172, 309, 642, 722, 946, 1046
Hpy188III	TCNNGA	5 cut(s)	19, 266, 395, 581, 736
Hpy8I	GTNNAC	2 cut(s)	182, 197
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	3 cut(s)	25, 410, 973
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	4 cut(s)	41, 897, 908, 1037
HpyF3I	CTNAG	2 cut(s)	191, 945
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	8 cut(s)	222, 248, 373, 497, 547, 589, 628, 639
HspAI	GCGC	2 cut(s)	302, 330
KpnI	GGTACC	1 cut(s)	122
Ksp22I	TGATCA	3 cut(s)	385, 786, 799
Kzo9I	GATC	8 cut(s)	145, 385, 402, 436, 551, 786, 799, 1041
LmnI	GCTCC	2 cut(s)	766, 988
Lsp1109I	GCAGC	3 cut(s)	53, 125, 1021
MaeI	CTAG	3 cut(s)	549, 581, 615
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	2 cut(s)	362, 853
MalI	GATC	8 cut(s)	147, 387, 404, 438, 553, 788, 801, 1043
MboI	GATC	8 cut(s)	145, 385, 402, 436, 551, 786, 799, 1041
MboII	GAAGA	8 cut(s)	146, 156, 159, 326, 446, 578, 689, 1032
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	3 cut(s)	647, 839, 993
MluCI	AATT	5 cut(s)	249, 451, 530, 560, 780
MmeI	TCCRAC	3 cut(s)	332, 588, 700
MnlI	CCTC	5 cut(s)	25, 114, 170, 716, 940
MseI	TTAA	5 cut(s)	108, 450, 537, 666, 975
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	2 cut(s)	44, 116
MspI	CCGG	6 cut(s)	59, 84, 122, 137, 647, 839
MspR9I	CCNGG	3 cut(s)	647, 839, 903
Mva1269I	GAATGC	1 cut(s)	897
MvaI	CCWGG	1 cut(s)	903
MvnI	CGCG	1 cut(s)	332
NciI	CCSGG	2 cut(s)	647, 839
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	8 cut(s)	145, 385, 402, 436, 551, 786, 799, 1041
NlaIII	CATG	8 cut(s)	222, 248, 373, 497, 547, 589, 628, 639
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	2 cut(s)	185, 665
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	2 cut(s)	589, 628
PciI	ACATGT	2 cut(s)	585, 624
PctI	GAATGC	1 cut(s)	897
PfeI	GAWTC	6 cut(s)	151, 241, 373, 477, 618, 919
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	43, 115, 1036
PscI	ACATGT	2 cut(s)	585, 624
Psp124BI	GAGCTC	1 cut(s)	993
Psp6I	CCWGG	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	120, 1004
RsaNI	GTAC	2 cut(s)	119, 1003
RseI	CAYNNNNRTG	1 cut(s)	678
SacI	GAGCTC	1 cut(s)	993
SaqAI	TTAA	5 cut(s)	108, 450, 537, 666, 975
SatI	GCNGC	3 cut(s)	42, 114, 1035
Sau3AI	GATC	8 cut(s)	145, 385, 402, 436, 551, 786, 799, 1041
ScaI	AGTACT	1 cut(s)	1004
ScrFI	CCNGG	3 cut(s)	647, 839, 903
SduI	GDGCHC	3 cut(s)	647, 839, 993
SfcI	CTRYAG	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	678
Sse9I	AATT	5 cut(s)	249, 451, 530, 560, 780
SsiI	CCGC	2 cut(s)	116, 671
SspMI	CTAG	3 cut(s)	549, 581, 615
SstI	GAGCTC	1 cut(s)	993
StyD4I	CCNGG	3 cut(s)	645, 837, 901
StyI	CCWWGG	3 cut(s)	288, 352, 543
TaaI	ACNGT	3 cut(s)	25, 410, 973
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	2 cut(s)	144, 405
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	249, 451, 530, 560, 780
TatI	WGTACW	1 cut(s)	1002
TfiI	GAWTC	6 cut(s)	151, 241, 373, 477, 618, 919
Tru1I	TTAA	5 cut(s)	108, 450, 537, 666, 975
Tru9I	TTAA	5 cut(s)	108, 450, 537, 666, 975
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	3 cut(s)	41, 113, 1034
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	4 cut(s)	254, 510, 521, 833
TspGWI	ACGGA	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	2 cut(s)	589, 628
XspI	CTAG	3 cut(s)	549, 581, 615
ZrmI	AGTACT	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.