Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

20707307 .. 20709027

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGGTAAGAACGATTTTCTAACCCCAAAGGCGATTGCGAATCGAATTAAAGCCAAAGGACTTCAAAAGCTTCGATGGTATTGTCAGATGTGTCAGAAACAATGCCGAGACGAGAATGGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGAGGCAGATGCAAGTTTTTGGGCAGAATCCGACTCGTGTTGTCGATGGTTACTCTGAAGAATTCGAGCAGACGTTTCTCGATCTGATGAGGCGGAGCCACCGTTTCTCTCGTATCGCTGCCACTGTTGTCTACAATGAGTATATTAACGATAGACATCATGTTCACATGAATTCGACGGAGTGGGCGACGTTGACGGAGTTTATCAAGCATCTTGGGAAAACTGGTAAGTGTAAGGTTGAAGAAACTCCTAAAGGTTGGTTTATTACTTATATAGATAGAGATTCTGAGACTTTGTTTAAGGAGAGGTTGAAGAATAAGAGAGTTAAGAGTGATTTAGCTGAGGAGGAGAAGCAAGAGAGGGAGATTCAGAGACAGATTGAGAGAGCTGCTGAGAAATTGAATGGTGGTGGTGGTGAAGGTGAAACCAGTGGTAATGATGAAGTTGTGGATGATGGTGATGATGAGAGGAAGAAAGATGAAGACTTGAGGTTGAAGAGTGGGGTCAAGGTTGGATTTGCTCTTGGTGGAGGTGTTAAACAGGTTGCTACGGGTAAAGAGAGAGGGGAAAGCTCGAAACTTTTGTTTGGGGATGAAGAGAATGACAAGGTTGAGAGAGGGGAGAAGAGGAAGAGAAGTGGGGACTCCGGGAGGAGCGAGAAGGAGAGGAGATCAGCTTTGGATGAGTTGATGAAGGAGGAAGAGAAGAAGAAGGAGAGGATGAATCGGAAAGATTACTGGTTGTTCGAAGGGATCATTGTGAAGGTGATGAGTAAGGCTTTGGCAGAGAAAGGGTATTATAAGCAAAAAGGTGTTGTGAAGAAAGTGATTGATAATTATGTTGGGGAGATCAAAATGCTTGATTCTAAACATGTGTTGAGAGTTGATCAAAAGGAGCTAGAGACTGTGCTTCCACAAATTGGAGGGATGGTGAAGATAGTGAATGGGGCATATCGTGGTTCGAATGCAAGGTTGTTGGGTGTGGATACAGAGAAGTTCTGTGCTAAAGTGCAGATCGAGAAAGGTGTCTATGATGGAAGAGTCATCAAGTCCATTGAGTACGAGGACATATGCAAACTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

411

Amino Acids

47.29

Weight (kDa)

8.89

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	24 - 53	2.7e-20	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	59 - 177	3.9e-46	KIN17 WH-like domain
KN17_SH3	PF18131	293 - 346	3.3e-24	KN17 SH3-like domain
GPKOW_C	PF25088	302 - 409	1.2e-17	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	355 - 411	8.9e-24	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AccB7I	CCANNNNNTGG	1 cut(s)	1070
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	911
AcsI	RAATTY	2 cut(s)	212, 322
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	1211
AfiI	CCNNNNNNNGG	1 cut(s)	1070
AflIII	ACRYGT	1 cut(s)	1021
AgsI	TTSAA	6 cut(s)	65, 124, 392, 463, 553, 646
AluBI	AGCT	6 cut(s)	70, 491, 539, 723, 827, 1048
AluI	AGCT	6 cut(s)	70, 491, 539, 723, 827, 1048
Alw26I	GTCTC	4 cut(s)	102, 434, 517, 1046
AlwI	GGATC	1 cut(s)	911
ApeKI	GCWGC	2 cut(s)	269, 539
ApoI	RAATTY	2 cut(s)	212, 322
Asp700I	GAANNNNTTC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	799
AsuHPI	GGTGA	6 cut(s)	140, 578, 584, 620, 928, 1093
AsuII	TTCGAA	2 cut(s)	897, 1112
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	639
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	256, 526
BccI	CCATC	5 cut(s)	69, 191, 599, 1072, 1178
BciVI	GTATCC	1 cut(s)	1129
BclI	TGATCA	1 cut(s)	1036
BcnI	CCSGG	1 cut(s)	799
BcoDI	GTCTC	4 cut(s)	102, 434, 517, 1046
BfaI	CTAG	1 cut(s)	1049
BfuI	GTATCC	1 cut(s)	1129
BisI	GCNGC	2 cut(s)	270, 540
BlsI	GCNGC	2 cut(s)	271, 541
Bme1390I	CCNGG	1 cut(s)	799
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	799
BmsI	GCATC	2 cut(s)	150, 370
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	2 cut(s)	897, 1112
BpuEI	CTTGAG	1 cut(s)	658
BpuMI	CCSGG	1 cut(s)	799
BsaBI	GATNNNNATC	1 cut(s)	306
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 268, 1065, 1095
Bsc4I	CCNNNNNNNGG	1 cut(s)	1070
Bse1I	ACTGG	3 cut(s)	379, 579, 893
Bse8I	GATNNNNATC	1 cut(s)	306
BseGI	GGATG	5 cut(s)	607, 748, 838, 876, 1083
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	1070
BseMII	CTCAG	3 cut(s)	429, 483, 534
BseNI	ACTGG	3 cut(s)	379, 579, 893
BseRI	GAGGAG	4 cut(s)	509, 512, 817, 832
BseXI	GCAGC	2 cut(s)	256, 526
BsgI	GTGCAG	1 cut(s)	1181
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	1 cut(s)	1070
BsmAI	GTCTC	4 cut(s)	102, 434, 517, 1046
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	806
BsmI	GAATGC	1 cut(s)	1120
Bsp119I	TTCGAA	2 cut(s)	897, 1112
Bsp143I	GATC	6 cut(s)	232, 821, 903, 999, 1036, 1164
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	3 cut(s)	430, 484, 535
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	911
BspT104I	TTCGAA	2 cut(s)	897, 1112
BsrI	ACTGG	3 cut(s)	379, 579, 893
BssMI	GATC	6 cut(s)	232, 821, 903, 999, 1036, 1164
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	254, 277, 1057
Bst6I	CTCTTC	6 cut(s)	641, 741, 770, 776, 846, 1183
BstBI	TTCGAA	2 cut(s)	897, 1112
BstDEI	CTNAG	4 cut(s)	438, 492, 543, 1233
BstF5I	GGATG	5 cut(s)	607, 748, 838, 876, 1083
BstKTI	GATC	6 cut(s)	235, 824, 906, 1002, 1039, 1167
BstMAI	GTCTC	4 cut(s)	102, 434, 517, 1046
BstMBI	GATC	6 cut(s)	232, 821, 903, 999, 1036, 1164
BstNSI	RCATGY	1 cut(s)	1025
BstSCI	CCNGG	1 cut(s)	797
BstV1I	GCAGC	2 cut(s)	256, 526
BstV2I	GAAGAC	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	1129
BtsCI	GGATG	5 cut(s)	607, 748, 838, 876, 1083
BtsIMutI	CAGTG	2 cut(s)	273, 586
Csp6I	GTAC	1 cut(s)	1210
CviAII	CATG	3 cut(s)	311, 319, 1022
CviJI	RGCY	9 cut(s)	53, 70, 249, 491, 539, 723, 827, 929, 1048
CviKI_1	RGCY	9 cut(s)	53, 70, 249, 491, 539, 723, 827, 929, 1048
CviQI	GTAC	1 cut(s)	1210
DdeI	CTNAG	4 cut(s)	438, 492, 543, 1233
DpnI	GATC	6 cut(s)	234, 823, 905, 1001, 1038, 1166
DpnII	GATC	6 cut(s)	232, 821, 903, 999, 1036, 1164
Eam1104I	CTCTTC	6 cut(s)	641, 741, 770, 776, 846, 1183
EarI	CTCTTC	6 cut(s)	641, 741, 770, 776, 846, 1183
EciI	GGCGGA	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	228
EcoRI	GAATTC	2 cut(s)	212, 322
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	3 cut(s)	314, 322, 1025
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	3 cut(s)	310, 318, 1021
FauNDI	CATATG	1 cut(s)	1220
FbaI	TGATCA	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	270, 540
FokI	GGATG	5 cut(s)	614, 755, 845, 883, 1090
Fsp4HI	GCNGC	2 cut(s)	270, 540
FspBI	CTAG	1 cut(s)	1049
GluI	GCNGC	2 cut(s)	270, 540
HapII	CCGG	1 cut(s)	798
Hin1II	CATG	3 cut(s)	314, 322, 1025
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	68
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	6 cut(s)	140, 578, 584, 620, 928, 1093
Hpy166II	GTNNAC	3 cut(s)	283, 316, 345
Hpy188I	TCNGA	8 cut(s)	87, 96, 183, 208, 237, 439, 522, 879
Hpy188III	TCNNGA	2 cut(s)	230, 1168
Hpy8I	GTNNAC	3 cut(s)	283, 316, 345
Hpy99I	CGWCG	2 cut(s)	331, 343
HpyAV	CCTTC	6 cut(s)	563, 805, 838, 856, 893, 907
HpyCH4III	ACNGT	3 cut(s)	254, 277, 1057
HpyCH4IV	ACGT	2 cut(s)	224, 341
HpyCH4V	TGCA	4 cut(s)	163, 1118, 1162, 1224
HpyF3I	CTNAG	4 cut(s)	438, 492, 543, 1233
HpySE526I	ACGT	2 cut(s)	224, 341
Hsp92II	CATG	3 cut(s)	314, 322, 1025
Ksp22I	TGATCA	1 cut(s)	1036
Kzo9I	GATC	6 cut(s)	232, 821, 903, 999, 1036, 1164
LmnI	GCTCC	3 cut(s)	246, 804, 1045
LpnPI	CCDG	6 cut(s)	164, 360, 592, 677, 811, 874
Lsp1109I	GCAGC	2 cut(s)	256, 526
LweI	GCATC	2 cut(s)	150, 370
MaeI	CTAG	1 cut(s)	1049
MaeII	ACGT	2 cut(s)	224, 341
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	6 cut(s)	234, 823, 905, 1001, 1038, 1166
MboI	GATC	6 cut(s)	232, 821, 903, 999, 1036, 1164
MluCI	AATT	6 cut(s)	45, 212, 322, 548, 985, 1068
MlyI	GAGTC	3 cut(s)	178, 788, 1200
MmeI	TCCRAC	2 cut(s)	206, 643
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	5 cut(s)	48, 297, 450, 477, 687
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	799
Mva1269I	GAATGC	1 cut(s)	1120
NciI	CCSGG	1 cut(s)	799
NdeI	CATATG	1 cut(s)	1220
NdeII	GATC	6 cut(s)	232, 821, 903, 999, 1036, 1164
NlaIII	CATG	3 cut(s)	314, 322, 1025
NlaIV	GGNNCC	1 cut(s)	248
NmeAIII	GCCGAG	1 cut(s)	131
NspI	RCATGY	1 cut(s)	1025
NspV	TTCGAA	2 cut(s)	897, 1112
PciI	ACATGT	1 cut(s)	1021
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PctI	GAATGC	1 cut(s)	1120
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	8 cut(s)	40, 120, 143, 178, 434, 517, 874, 1013
PflMI	CCANNNNNTGG	1 cut(s)	1070
PfoI	TCCNGGA	1 cut(s)	797
PkrI	GCNGC	2 cut(s)	271, 541
PleI	GAGTC	3 cut(s)	178, 788, 1199
PpsI	GAGTC	3 cut(s)	178, 788, 1199
PscI	ACATGT	1 cut(s)	1021
PsiI	TTATAA	1 cut(s)	951
PspN4I	GGNNCC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	1211
RsaNI	GTAC	1 cut(s)	1210
SaqAI	TTAA	5 cut(s)	48, 297, 450, 477, 687
SatI	GCNGC	2 cut(s)	270, 540
Sau3AI	GATC	6 cut(s)	232, 821, 903, 999, 1036, 1164
SchI	GAGTC	3 cut(s)	178, 788, 1200
ScrFI	CCNGG	1 cut(s)	799
SfaNI	GCATC	2 cut(s)	150, 370
SfuI	TTCGAA	2 cut(s)	897, 1112
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
Sse9I	AATT	6 cut(s)	45, 212, 322, 548, 985, 1068
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	1049
StyD4I	CCNGG	1 cut(s)	797
TaaI	ACNGT	3 cut(s)	254, 277, 1057
TaiI	ACGT	2 cut(s)	227, 344
TasI	AATT	6 cut(s)	45, 212, 322, 548, 985, 1068
TfiI	GAWTC	8 cut(s)	40, 120, 143, 178, 434, 517, 874, 1013
Tru1I	TTAA	5 cut(s)	48, 297, 450, 477, 687
Tru9I	TTAA	5 cut(s)	48, 297, 450, 477, 687
TscAI	CASTG	2 cut(s)	280, 586
TseI	GCWGC	2 cut(s)	269, 539
TspDTI	ATGAA	6 cut(s)	335, 606, 645, 759, 857, 887
TspGWI	ACGGA	2 cut(s)	344, 362
TspRI	CASTG	2 cut(s)	280, 586
Van91I	CCANNNNNTGG	1 cut(s)	1070
XapI	RAATTY	2 cut(s)	212, 322
XceI	RCATGY	1 cut(s)	1025
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.