Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

55971221 .. 55972162

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG333600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAAGCGCAGCCACCGCTTCAGCCGCATCGCCGCCACCGTCGTTTACAACGAGTACATCAACGACCGCCACCACGTCCACATGAACTCGACGGAGTGGGCGACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACCGGGAAGTGCAAGGTGGAGGAGACGCCGAAGGGGTGGTTTATTACTTATATTGATAGGGATTCGGAGACGCTGTTTAAGGAGAGGGAGAAGTTGAAGAGAGTGAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCGGATAATGTAGAGGGTCAGGGTGGTGAGGAGGTGAGTAGGGAGTTGAAAGTGGAGAGCGGTGTGAAAATCGGGTTTGCGCTTGGGGGATTGAAGAAAGAGAAAGGGGAGAGTTCGAAGTTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACCGGGGGTGGTAGTGGTGGCGGTGGTGGTTCAGGGAGCTTGGCGTTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGACTATTGGGTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTATAAGCAAAAAGGTGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGACGGTGATTCCTCAAATTGGGTGCCTTGTGAAGATAGTGAATGGCGCATACAGAGGATCAAATGCAAGGTTGCTGGCAGTGGACACGGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGCGTCTATGATGGTAGGGTGCTTAAAGCTGTTGAGTATGAAGATATTTGTAAAATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

313

Amino Acids

35.55

Weight (kDa)

8.81

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WH_KIN17	PF10357	1 - 98	2.5e-37	KIN17 WH-like domain
KN17_SH3	PF18131	195 - 248	4.6e-23	KN17 SH3-like domain
GPKOW_C	PF25088	204 - 311	1.1e-16	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	257 - 313	2.6e-22	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	780
AccBSI	CCGCTC	1 cut(s)	381
AciI	CCGC	9 cut(s)	16, 25, 33, 67, 254, 323, 381, 510, 641
AclWI	GGATC	2 cut(s)	617, 823
AcuI	CTGAAG	1 cut(s)	4
AcyI	GRCGYC	2 cut(s)	161, 882
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	776
AgsI	TTSAA	5 cut(s)	232, 370, 415, 710, 719
AjiI	CACGTC	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	4 cut(s)	528, 635, 754, 908
AluI	AGCT	4 cut(s)	528, 635, 754, 908
Alw26I	GTCTC	3 cut(s)	152, 197, 752
AlwI	GGATC	2 cut(s)	617, 823
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	9
AspLEI	GCGC	4 cut(s)	9, 403, 806, 860
AspS9I	GGNCC	1 cut(s)	135
AsuC2I	CCSGG	2 cut(s)	139, 493
AsuHPI	GGTGA	3 cut(s)	359, 367, 775
AsuII	TTCGAA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	884
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	2 cut(s)	139, 493
BcoDI	GTCTC	3 cut(s)	152, 197, 752
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	10, 25, 33
BlsI	GCNGC	3 cut(s)	11, 26, 34
Bme1390I	CCNGG	2 cut(s)	139, 493
Bme18I	GGWCC	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	782
BmrFI	CCNGG	2 cut(s)	139, 493
BmsI	GCATC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	754, 776
BpuMI	CCSGG	2 cut(s)	139, 493
BsaHI	GRCGYC	2 cut(s)	161, 882
BsaJI	CCNNGG	1 cut(s)	492
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	776
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	776
BseRI	GAGGAG	7 cut(s)	170, 272, 275, 365, 467, 554, 572
BseXI	GCAGC	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	887
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	780
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	138, 492
BslI	CCNNNNNNNGG	1 cut(s)	776
BsmAI	GTCTC	3 cut(s)	152, 197, 752
BsmBI	CGTCTC	3 cut(s)	152, 197, 752
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	437
Bsp143I	GATC	3 cut(s)	609, 742, 815
BspACI	CCGC	9 cut(s)	16, 25, 33, 67, 254, 323, 381, 510, 641
BspANI	GGCC	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	782
BspPI	GGATC	2 cut(s)	617, 823
BspT104I	TTCGAA	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	780
BsrBI	CCGCTC	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	609, 742, 815
BssNI	GRCGYC	2 cut(s)	161, 882
Bst4CI	ACNGT	2 cut(s)	40, 763
Bst6I	CTCTTC	3 cut(s)	227, 467, 549
BstACI	GRCGYC	2 cut(s)	161, 882
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	725, 834
BstDEI	CTNAG	1 cut(s)	861
BstF5I	GGATG	1 cut(s)	469
BstHHI	GCGC	4 cut(s)	9, 403, 806, 860
BstKTI	GATC	3 cut(s)	612, 745, 818
BstMAI	GTCTC	3 cut(s)	152, 197, 752
BstMBI	GATC	3 cut(s)	609, 742, 815
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 24, 251
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	137, 491
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	245
BtgZI	GCGATG	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	1 cut(s)	843
Cac8I	GCNNGC	2 cut(s)	725, 834
CfoI	GCGC	4 cut(s)	9, 403, 806, 860
Cfr13I	GGNCC	1 cut(s)	135
CseI	GACGC	4 cut(s)	112, 169, 214, 871
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	82, 728
CviJI	RGCY	7 cut(s)	12, 24, 245, 528, 635, 754, 908
CviKI_1	RGCY	7 cut(s)	12, 24, 245, 528, 635, 754, 908
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	861
DpnI	GATC	3 cut(s)	611, 744, 817
DpnII	GATC	3 cut(s)	609, 742, 815
Eam1104I	CTCTTC	3 cut(s)	227, 467, 549
EarI	CTCTTC	3 cut(s)	227, 467, 549
EciI	GGCGGA	2 cut(s)	269, 656
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	4
Esp3I	CGTCTC	3 cut(s)	152, 197, 752
FaeI	CATG	2 cut(s)	85, 731
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FatI	CATG	2 cut(s)	81, 727
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	10, 25, 33
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	10, 25, 33
GlaI	GCGC	4 cut(s)	8, 402, 805, 859
GluI	GCNGC	3 cut(s)	10, 25, 33
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	2 cut(s)	138, 492
HgaI	GACGC	4 cut(s)	112, 169, 214, 871
HhaI	GCGC	4 cut(s)	9, 403, 806, 860
Hin1I	GRCGYC	2 cut(s)	161, 882
Hin1II	CATG	2 cut(s)	85, 731
Hin6I	GCGC	4 cut(s)	7, 401, 804, 858
HinP1I	GCGC	4 cut(s)	7, 401, 804, 858
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	2 cut(s)	197, 766
HpaII	CCGG	2 cut(s)	138, 492
HphI	GGTGA	3 cut(s)	359, 367, 775
Hpy166II	GTNNAC	3 cut(s)	46, 79, 841
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	733
Hpy8I	GTNNAC	3 cut(s)	46, 79, 841
Hpy99I	CGWCG	3 cut(s)	44, 94, 106
HpyAV	CCTTC	6 cut(s)	160, 235, 475, 580, 640, 871
HpyCH4III	ACNGT	2 cut(s)	40, 763
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	147, 824, 868, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 24, 251
HpyF3I	CTNAG	1 cut(s)	861
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	2 cut(s)	161, 882
Hsp92II	CATG	2 cut(s)	85, 731
HspAI	GCGC	4 cut(s)	7, 401, 804, 858
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	3 cut(s)	609, 742, 815
LmnI	GCTCC	2 cut(s)	525, 751
LpnPI	CCDG	7 cut(s)	151, 254, 326, 505, 507, 734, 818
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	3 cut(s)	611, 744, 817
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	3 cut(s)	609, 742, 815
MboII	GAAGA	8 cut(s)	244, 427, 484, 566, 577, 688, 802, 932
MluCI	AATT	2 cut(s)	774, 933
MmeI	TCCRAC	1 cut(s)	516
MseI	TTAA	4 cut(s)	213, 282, 579, 903
MspI	CCGG	2 cut(s)	138, 492
MspR9I	CCNGG	2 cut(s)	139, 493
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	15, 24, 251
NciI	CCSGG	2 cut(s)	139, 493
NdeII	GATC	3 cut(s)	609, 742, 815
NlaIII	CATG	2 cut(s)	85, 731
NlaIV	GGNNCC	1 cut(s)	782
NspI	RCATGY	1 cut(s)	731
NspV	TTCGAA	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 48, 98
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	197, 766
PkrI	GCNGC	3 cut(s)	11, 26, 34
PspN4I	GGNNCC	1 cut(s)	782
PspPI	GGNCC	1 cut(s)	135
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	213, 282, 579, 903
SatI	GCNGC	3 cut(s)	10, 25, 33
Sau3AI	GATC	3 cut(s)	609, 742, 815
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	139, 493
SfaNI	GCATC	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	733, 755
SmoI	CTYRAG	2 cut(s)	733, 755
Sse9I	AATT	2 cut(s)	774, 933
SsiI	CCGC	9 cut(s)	16, 25, 33, 67, 254, 323, 381, 510, 641
StyD4I	CCNGG	2 cut(s)	137, 491
TaaI	ACNGT	2 cut(s)	40, 763
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	89, 437
TasI	AATT	2 cut(s)	774, 933
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	2 cut(s)	27, 35
TfiI	GAWTC	2 cut(s)	197, 766
Tru1I	TTAA	4 cut(s)	213, 282, 579, 903
Tru9I	TTAA	4 cut(s)	213, 282, 579, 903
TscAI	CASTG	1 cut(s)	843
TseI	GCWGC	1 cut(s)	9
TspDTI	ATGAA	3 cut(s)	17, 98, 933
TspGWI	ACGGA	3 cut(s)	107, 125, 860
TspRI	CASTG	1 cut(s)	843
VpaK11BI	GGWCC	1 cut(s)	135
XceI	RCATGY	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.