Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

28415300 .. 28415543

Gene Structure 244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37793

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCTTGAAAGCAAACATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGACGGTGATTCCTCAAATTGGGTGCCTTGTGAAAATAGTGAATGGCGCGTACAGAGGATCGAATGCGAGGTTGCTGGCAGTGGACACGGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGCGTCTATGATGTAGGGTATTTGAGGATAACATGTTTAAAGCTGTTGAGTGAGGATATTTGTAAATTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

80

Amino Acids

8.97

Weight (kDa)

7.64

Isoelectric Point (pI)

19.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPKOW_C	PF25088	4 - 57	1.3e-09	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	20 - 80	3e-14	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccII	CGCG	1 cut(s)	95
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	2 cut(s)	16, 200
AgsI	TTSAA	1 cut(s)	8
AluBI	AGCT	2 cut(s)	43, 211
AluI	AGCT	2 cut(s)	43, 211
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	95, 149
AsuHPI	GGTGA	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	69
BclI	TGATCA	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	43, 65
BsaHI	GRCGYC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	31, 104
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	69
BssMI	GATC	2 cut(s)	31, 104
BssNI	GRCGYC	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	95, 149
BstKTI	GATC	2 cut(s)	34, 107
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	31, 104
BstNSI	RCATGY	2 cut(s)	20, 204
BstUI	CGCG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	2 cut(s)	95, 149
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	2 cut(s)	17, 201
CviJI	RGCY	2 cut(s)	43, 211
CviKI_1	RGCY	2 cut(s)	43, 211
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	33, 106
DpnII	GATC	2 cut(s)	31, 104
DraI	TTTAAA	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	2 cut(s)	20, 204
FaiI	YATR	4 cut(s)	18, 177, 202, 241
FatI	CATG	2 cut(s)	16, 200
FbaI	TGATCA	1 cut(s)	31
GlaI	GCGC	2 cut(s)	94, 148
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	2 cut(s)	95, 149
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	20, 204
Hin6I	GCGC	2 cut(s)	93, 147
HinP1I	GCGC	2 cut(s)	93, 147
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	157, 239
HpyF3I	CTNAG	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	20, 204
HspAI	GCGC	2 cut(s)	93, 147
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 104
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	2 cut(s)	23, 107
MalI	GATC	2 cut(s)	33, 106
MboI	GATC	2 cut(s)	31, 104
MluCI	AATT	2 cut(s)	63, 233
MnlI	CCTC	5 cut(s)	69, 95, 108, 186, 214
MseI	TTAA	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	115
MvnI	CGCG	1 cut(s)	95
NdeII	GATC	2 cut(s)	31, 104
NlaIII	CATG	2 cut(s)	20, 204
NlaIV	GGNNCC	1 cut(s)	71
NspI	RCATGY	2 cut(s)	20, 204
PciI	ACATGT	2 cut(s)	16, 200
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	55
PscI	ACATGT	2 cut(s)	16, 200
PspN4I	GGNNCC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	31, 104
SetI	ASST	4 cut(s)	45, 119, 156, 213
SmlI	CTYRAG	2 cut(s)	22, 44
SmoI	CTYRAG	2 cut(s)	22, 44
Sse9I	AATT	2 cut(s)	63, 233
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	63, 233
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	132
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	20, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.