Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

69766637 .. 69767358

Gene Structure 722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG519000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGGAAGAATGACTTCCTCACGCCCAAGGCAATCGCGAACCGTATCAAAGCCAAGGGACTCCAAAAGCTCAGGTGGGATTGCCAGAAGCATTGCCGCGACGAGAACGGCTTCAAGTGTCATTGCTTGAGTGAGAGCCACCAGCGCCAGATACTCATCTTCGGTGAGAATCCCAACCGCGTCATTGAGGGTGAGAATCCCGTTTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

70

Amino Acids

8.05

Weight (kDa)

9.1

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	28 - 50	6.9e-13	KIN17 C2H2-type zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	38, 99, 180
AciI	CCGC	2 cut(s)	97, 178
AgsI	TTSAA	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	1 cut(s)	188
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Asp700I	GAANNNNTTC	2 cut(s)	14, 110
AspLEI	GCGC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	176, 203
BceAI	ACGGC	1 cut(s)	124
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	27, 54
Bse3DI	GCAATG	2 cut(s)	91, 121
Bse8I	GATNNNNATC	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	27, 54
BseJI	GATNNNNATC	1 cut(s)	155
BseMI	GCAATG	2 cut(s)	91, 121
BseMII	CTCAG	1 cut(s)	85
Bsh1236I	CGCG	3 cut(s)	38, 99, 180
BslFI	GGGAC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	72
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	2 cut(s)	97, 178
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	3 cut(s)	38, 99, 180
BsrDI	GCAATG	2 cut(s)	91, 121
BssECI	CCNNGG	2 cut(s)	27, 54
BssT1I	CCWWGG	2 cut(s)	27, 54
Bst4CI	ACNGT	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	71, 210
BstFNI	CGCG	3 cut(s)	38, 99, 180
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstUI	CGCG	3 cut(s)	38, 99, 180
BtuMI	TCGCGA	1 cut(s)	38
CfoI	GCGC	1 cut(s)	147
CseI	GACGC	1 cut(s)	169
CviJI	RGCY	5 cut(s)	53, 70, 111, 138, 209
CviKI_1	RGCY	5 cut(s)	53, 70, 111, 138, 209
DdeI	CTNAG	2 cut(s)	71, 210
Eco130I	CCWWGG	2 cut(s)	27, 54
EcoT14I	CCWWGG	2 cut(s)	27, 54
ErhI	CCWWGG	2 cut(s)	27, 54
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	148
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	60, 169, 196
HphI	GGTGA	2 cut(s)	176, 203
Hpy188III	TCNNGA	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	71, 210
HspAI	GCGC	1 cut(s)	145
LpnPI	CCDG	4 cut(s)	58, 98, 155, 161
MboII	GAAGA	2 cut(s)	19, 151
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	29, 181
MroXI	GAANNNNTTC	2 cut(s)	14, 110
MvnI	CGCG	3 cut(s)	38, 99, 180
MwoI	GCNNNNNNNGC	1 cut(s)	144
NruI	TCGCGA	1 cut(s)	38
PdmI	GAANNNNTTC	2 cut(s)	14, 110
PfeI	GAWTC	2 cut(s)	169, 196
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
RruI	TCGCGA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	54
SetI	ASST	2 cut(s)	72, 77
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SsiI	CCGC	2 cut(s)	97, 178
StyI	CCWWGG	2 cut(s)	27, 54
TaaI	ACNGT	1 cut(s)	44
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	169, 196
XmnI	GAANNNNTTC	2 cut(s)	14, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.