Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

38691543 .. 38691752

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG321600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGGGAAGAACGACTTCCTCACGCCCAAGGCAATCGCAAACCGAATCAAAGCCAAGGGGCTGCAGATGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGATGAAAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTCATCTTCGGCGAGAACCCCAACCGCATCGTCGAGGGCCTACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

69

Amino Acids

8.09

Weight (kDa)

9.19

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	24 - 53	1.4e-21	KIN17 C2H2-type zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	2 cut(s)	106, 187
AfaI	GTAC	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	61
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	2 cut(s)	62, 106
BlsI	GCNGC	2 cut(s)	63, 107
BmgT120I	GGNCC	1 cut(s)	199
BmsI	GCATC	3 cut(s)	57, 150, 198
BsaBI	GATNNNNATC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	27, 54
BsaWI	WCCGGW	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	27, 54
BseJI	GATNNNNATC	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	73
BsnI	GGCC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	106, 187
BspANI	GGCC	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	27, 54
BssT1I	CCWWGG	2 cut(s)	27, 54
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 90, 126, 153, 160
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	5 cut(s)	53, 61, 120, 147, 201
CviKI_1	RGCY	5 cut(s)	53, 61, 120, 147, 201
CviQI	GTAC	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	27, 54
EcoO109I	RGGNCCY	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	27, 54
ErhI	CCWWGG	2 cut(s)	27, 54
FaeI	CATG	1 cut(s)	139
FaiI	YATR	1 cut(s)	137
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	62, 106
Fsp4HI	GCNGC	2 cut(s)	62, 106
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	62, 106
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	64, 135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 90, 126, 153, 160
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	5 cut(s)	86, 98, 107, 164, 170
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	3 cut(s)	57, 150, 198
MboII	GAAGA	2 cut(s)	19, 160
MnlI	CCTC	2 cut(s)	29, 190
MroXI	GAANNNNTTC	1 cut(s)	14
MspI	CCGG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	67, 90, 126, 153, 160
NlaIII	CATG	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	63, 107
PspPI	GGNCC	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	66
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	2 cut(s)	62, 106
Sau96I	GGNCC	1 cut(s)	199
SfaNI	GCATC	3 cut(s)	57, 150, 198
SfcI	CTRYAG	1 cut(s)	62
SsiI	CCGC	2 cut(s)	106, 187
StyI	CCWWGG	2 cut(s)	27, 54
TaqI	TCGA	1 cut(s)	195
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	45
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.