Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000796.1

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

135224 .. 136090

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000796.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgaagcgtagccaccgcttcagtcgcatcactgccaccatcgtttacaacgagtacatcaacgaccaccaccacgtgcacatgaactcgacggagtgggccacgctgccggagtttgtgaagcatttggggaggaccggcaaatgtaaggtggaggagacgccgaaggggtggttcattacttatattgatagggattcggagactctgtttaaggagagggagaagatgaagagagtgaaggccgatttggcggaggaggagaagcaggagagggagattaagaagcagattgagagggtttatcagtcaatgccgaatgcagataatgtagagggtcacggtggtgaggaggtgagtagggagttgaaagtggagagtggtgtgaaaatcgggtttgcgcttgtgggattgaagaaagagaaggaggagaaaggggagggttcgaaattggtgtttgaggaggtggaggatgagaggaagagtaagaagtcgaaaactgagggtggtaatggtactggtaccggtggtgcagggggtttggcattggaggagttgatgagggaagaggagaggaagaaagagagggttaataggaaggactattgggtgtgtgaggggatcattttgaaagttatgagtaaagctttggcggagaagggttactataagcaaaaaggggttgtgaagaaagtgattgacaagtatgttggggagattgaaatgcttgaaagcaaacatgtctggagagttgatcagcaggagcttgagacggtgattcttcaaattgggtgccttgtgagtttgaagatagtgaatggcgcgtacagaggattgaatgcgaggttgctggcagtgcacggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

288

Amino Acids

33.01

Weight (kDa)

8.68

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	2 cut(s)	521, 792
AccII	CGCG	1 cut(s)	824
AciI	CCGC	3 cut(s)	16, 254, 653
AclWI	GGATC	1 cut(s)	629
AcuI	CTGAAG	1 cut(s)	4
AcvI	CACGTG	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	161
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	4 cut(s)	56, 517, 523, 827
AflIII	ACRYGT	1 cut(s)	739
AgeI	ACCGGT	1 cut(s)	524
AgsI	TTSAA	8 cut(s)	370, 415, 631, 722, 731, 785, 808, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	2 cut(s)	647, 766
AluI	AGCT	2 cut(s)	647, 766
Alw21I	GWGCWC	2 cut(s)	81, 861
Alw26I	GTCTC	3 cut(s)	152, 197, 764
Alw44I	GTGCAC	2 cut(s)	77, 857
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	2 cut(s)	99, 243
ApaLI	GTGCAC	2 cut(s)	77, 857
ApeKI	GCWGC	1 cut(s)	106
AsiGI	ACCGGT	1 cut(s)	524
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	403, 824
AspS9I	GGNCC	2 cut(s)	99, 135
AsuHPI	GGTGA	3 cut(s)	359, 367, 787
AsuII	TTCGAA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	2 cut(s)	81, 861
BanI	GGYRCC	2 cut(s)	521, 792
BbrPI	CACGTG	1 cut(s)	76
Bbv12I	GWGCWC	2 cut(s)	81, 861
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	1 cut(s)	47
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	3 cut(s)	152, 197, 764
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	99, 135
BmiI	GGNNCC	2 cut(s)	523, 794
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	766
Bpu14I	TTCGAA	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	788
BsaAI	YACGTR	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bse118I	RCCGGY	2 cut(s)	137, 524
Bse1I	ACTGG	1 cut(s)	523
BseGI	GGATG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	8 cut(s)	170, 272, 275, 365, 443, 476, 566, 584
BseSI	GKGCMC	2 cut(s)	81, 861
BseXI	GCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	101, 245
BshNI	GGYRCC	2 cut(s)	521, 792
BshTI	ACCGGT	1 cut(s)	524
BsiHKAI	GWGCWC	2 cut(s)	81, 861
BsiSI	CCGG	3 cut(s)	110, 138, 525
BsmAI	GTCTC	3 cut(s)	152, 197, 764
BsmBI	CGTCTC	2 cut(s)	152, 764
BsmI	GAATGC	2 cut(s)	325, 844
BsnI	GGCC	2 cut(s)	101, 245
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	81, 861
Bsp143I	GATC	2 cut(s)	621, 754
BspACI	CCGC	3 cut(s)	16, 254, 653
BspANI	GGCC	2 cut(s)	101, 245
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	2 cut(s)	523, 794
BspPI	GGATC	1 cut(s)	629
BspT104I	TTCGAA	1 cut(s)	446
BspT107I	GGYRCC	2 cut(s)	521, 792
BsrFI	RCCGGY	2 cut(s)	137, 524
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	2 cut(s)	137, 524
BssMI	GATC	2 cut(s)	621, 754
BssNI	GRCGYC	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	344, 775
Bst6I	CTCTTC	3 cut(s)	227, 476, 561
BstACI	GRCGYC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	824
BstHHI	GCGC	2 cut(s)	403, 824
BstKTI	GATC	2 cut(s)	624, 757
BstMAI	GTCTC	3 cut(s)	152, 197, 764
BstMBI	GATC	2 cut(s)	621, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 251, 856
BstNSI	RCATGY	1 cut(s)	743
BstSLI	GKGCMC	2 cut(s)	81, 861
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	101, 245
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	2 cut(s)	30, 861
BtsIMutI	CAGTG	2 cut(s)	30, 861
Cac8I	GCNNGC	1 cut(s)	852
CfoI	GCGC	2 cut(s)	403, 824
Cfr10I	RCCGGY	2 cut(s)	137, 524
Cfr13I	GGNCC	2 cut(s)	99, 135
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	55, 516, 522, 826
CspAI	ACCGGT	1 cut(s)	524
CviAII	CATG	2 cut(s)	82, 740
CviJI	RGCY	5 cut(s)	12, 101, 245, 647, 766
CviKI_1	RGCY	5 cut(s)	12, 101, 245, 647, 766
CviQI	GTAC	4 cut(s)	55, 516, 522, 826
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	2 cut(s)	623, 756
DpnII	GATC	2 cut(s)	621, 754
DraIII	CACNNNGTG	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	227, 476, 561
EarI	CTCTTC	3 cut(s)	227, 476, 561
EciI	GGCGGA	2 cut(s)	269, 668
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	76
Esp3I	CGTCTC	2 cut(s)	152, 764
FaeI	CATG	2 cut(s)	85, 743
FaiI	YATR	6 cut(s)	83, 186, 638, 669, 708, 741
FatI	CATG	2 cut(s)	81, 739
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	1 cut(s)	107
GlaI	GCGC	2 cut(s)	402, 823
GluI	GCNGC	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	2 cut(s)	101, 245
HapII	CCGG	3 cut(s)	110, 138, 525
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	403, 824
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	85, 743
Hin6I	GCGC	2 cut(s)	401, 822
HinP1I	GCGC	2 cut(s)	401, 822
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	3 cut(s)	197, 205, 778
HpaII	CCGG	3 cut(s)	110, 138, 525
HphI	GGTGA	3 cut(s)	359, 367, 787
Hpy166II	GTNNAC	3 cut(s)	46, 79, 859
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	745
Hpy8I	GTNNAC	3 cut(s)	46, 79, 859
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	5 cut(s)	160, 235, 418, 592, 652
HpyCH4III	ACNGT	2 cut(s)	344, 775
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	79, 323, 533, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 251, 856
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	85, 743
HspAI	GCGC	2 cut(s)	401, 822
KpnI	GGTACC	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	2 cut(s)	621, 754
LmnI	GCTCC	1 cut(s)	763
LpnPI	CCDG	9 cut(s)	123, 151, 254, 504, 519, 538, 730, 746, 836
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	338, 662
MalI	GATC	2 cut(s)	623, 756
MboI	GATC	2 cut(s)	621, 754
MboII	GAAGA	9 cut(s)	238, 244, 427, 493, 578, 589, 700, 773, 820
MhlI	GDGCHC	2 cut(s)	81, 861
MluCI	AATT	2 cut(s)	449, 786
MlyI	GAGTC	1 cut(s)	199
MseI	TTAA	3 cut(s)	213, 282, 591
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	3 cut(s)	110, 138, 525
Mva1269I	GAATGC	2 cut(s)	325, 844
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	3 cut(s)	24, 251, 856
NdeII	GATC	2 cut(s)	621, 754
NlaIII	CATG	2 cut(s)	85, 743
NlaIV	GGNNCC	2 cut(s)	523, 794
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	743
NspV	TTCGAA	1 cut(s)	446
OliI	CACNNNNGTG	1 cut(s)	345
PciI	ACATGT	1 cut(s)	739
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	2 cut(s)	325, 844
PfeI	GAWTC	2 cut(s)	197, 778
PinAI	ACCGGT	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	199
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	76
PscI	ACATGT	1 cut(s)	739
PspCI	CACGTG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	523, 794
PspPI	GGNCC	2 cut(s)	99, 135
RsaI	GTAC	4 cut(s)	56, 517, 523, 827
RsaNI	GTAC	4 cut(s)	55, 516, 522, 826
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	213, 282, 591
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	621, 754
Sau96I	GGNCC	2 cut(s)	99, 135
SchI	GAGTC	1 cut(s)	199
SduI	GDGCHC	2 cut(s)	81, 861
SetI	ASST	7 cut(s)	78, 153, 357, 468, 649, 768, 848
SfaNI	GCATC	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	446
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	2 cut(s)	449, 786
SsiI	CCGC	3 cut(s)	16, 254, 653
TaaI	ACNGT	2 cut(s)	344, 775
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	89, 446, 494
TasI	AATT	2 cut(s)	449, 786
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	197, 778
Tru1I	TTAA	3 cut(s)	213, 282, 591
Tru9I	TTAA	3 cut(s)	213, 282, 591
TscAI	CASTG	2 cut(s)	37, 861
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	17, 98, 166, 245
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	37, 861
VneI	GTGCAC	2 cut(s)	77, 857
VpaK11BI	GGWCC	1 cut(s)	135
XceI	RCATGY	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.