Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

49990997 .. 49995451

Gene Structure 4455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTGCCAGAAGCAATGCCGCGACGAAAAAGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATTCTCATCTTCGGCGAGAACCCCAACCGCGTCGTCGAGGGCTACTCTGAGGAGTTCGAGACCAGTTTCTTGGAGCACATGAAGCGCAGCCACCGCTTCAGCCGCATAGCCGCCACCGTCGTTTACAACGAGTACATCAACGACCGCCACCACGTGCACATGAACTCGACGGAGTGGGCCACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACTGGCAAGTGTAAGGTGGAGGAGACGCCGAAGGGGTGGTTCATTACTTATATTGATAGGGATTCGGAGACTCTGTTTAAGGAGAGGGAGAAGATGAAGAGAGTGAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCGGATAATGTAGAGTGTCAGGGTGGTGAGGAGGTGAGTAGGGAGTTGAAAGTGGAGAGTGGTGTGAAAATTGGGTTTGCACTTGGGGGATTGAAGAAAGAGAAGGGGGAGAAAGTGGAGAGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACCGGGGGTGGTAATGGTGGTGGTACTGGTGGTGCATGGCATTGGAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

233

Amino Acids

26.94

Weight (kDa)

7.65

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	1 - 24	1.2e-12	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	30 - 148	2e-46	KIN17 WH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	21, 102
AciI	CCGC	8 cut(s)	19, 100, 166, 175, 183, 217, 404, 473
AcuI	CTGAAG	1 cut(s)	154
AcvI	CACGTG	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	311
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	206, 673
AgsI	TTSAA	3 cut(s)	37, 520, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
Alw21I	GWGCWC	2 cut(s)	150, 231
Alw26I	GTCTC	3 cut(s)	125, 302, 347
Alw44I	GTGCAC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	249, 393
ApaLI	GTGCAC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	159
AspLEI	GCGC	2 cut(s)	69, 159
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	509, 517
AsuII	TTCGAA	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	231
BbrPI	CACGTG	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	150, 231
BbvI	GCAGC	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	3 cut(s)	125, 302, 347
BfoI	RGCGCY	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	4 cut(s)	19, 160, 175, 183
BlsI	GCNGC	4 cut(s)	20, 161, 176, 184
Bme1390I	CCNGG	1 cut(s)	652
BmgT120I	GGNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	652
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu14I	TTCGAA	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	652
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	651
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bse1I	ACTGG	3 cut(s)	135, 292, 679
Bse3DI	GCAATG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	3 cut(s)	135, 292, 679
BseRI	GAGGAG	6 cut(s)	137, 320, 422, 425, 515, 626
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	2 cut(s)	21, 102
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	251, 395
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	150, 231
BsiSI	CCGG	1 cut(s)	651
BsmAI	GTCTC	3 cut(s)	125, 302, 347
BsmBI	CGTCTC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	251, 395
Bso31I	GGTCTC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	596
Bsp1286I	GDGCHC	2 cut(s)	150, 231
BspACI	CCGC	8 cut(s)	19, 100, 166, 175, 183, 217, 404, 473
BspANI	GGCC	2 cut(s)	251, 395
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	21, 102
BspT104I	TTCGAA	1 cut(s)	596
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	135, 292, 679
BssECI	CCNNGG	1 cut(s)	651
BssNI	GRCGYC	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	377, 626
BstACI	GRCGYC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	596
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	2 cut(s)	21, 102
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 159
BstMAI	GTCTC	3 cut(s)	125, 302, 347
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 66, 154, 165, 174, 401
BstSCI	CCNGG	1 cut(s)	650
BstSLI	GKGCMC	1 cut(s)	231
BstUI	CGCG	2 cut(s)	21, 102
BstV1I	GCAGC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	251, 395
BtsCI	GGATG	1 cut(s)	628
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
CfoI	GCGC	2 cut(s)	69, 159
Cfr13I	GGNCC	1 cut(s)	249
CseI	GACGC	2 cut(s)	91, 319
Csp6I	GTAC	2 cut(s)	205, 672
CviAII	CATG	4 cut(s)	49, 151, 232, 684
CviJI	RGCY	8 cut(s)	33, 60, 114, 162, 174, 182, 251, 395
CviKI_1	RGCY	8 cut(s)	33, 60, 114, 162, 174, 182, 251, 395
CviQI	GTAC	2 cut(s)	205, 672
DdeI	CTNAG	1 cut(s)	120
DraIII	CACNNNGTG	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	377, 626
EarI	CTCTTC	2 cut(s)	377, 626
EciI	GGCGGA	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	154
Eco72I	CACGTG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	4 cut(s)	52, 154, 235, 687
FaiI	YATR	6 cut(s)	50, 152, 179, 233, 336, 685
FatI	CATG	4 cut(s)	48, 150, 231, 683
Fnu4HI	GCNGC	4 cut(s)	19, 160, 175, 183
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	4 cut(s)	19, 160, 175, 183
GlaI	GCGC	2 cut(s)	68, 158
GluI	GCNGC	4 cut(s)	19, 160, 175, 183
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	251, 395
HapII	CCGG	1 cut(s)	651
HgaI	GACGC	2 cut(s)	91, 319
HhaI	GCGC	2 cut(s)	69, 159
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	52, 154, 235, 687
Hin6I	GCGC	2 cut(s)	67, 157
HinP1I	GCGC	2 cut(s)	67, 157
HinfI	GANTC	3 cut(s)	73, 347, 355
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	2 cut(s)	509, 517
Hpy166II	GTNNAC	2 cut(s)	196, 229
Hpy188I	TCNGA	2 cut(s)	121, 352
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	196, 229
Hpy99I	CGWCG	5 cut(s)	26, 107, 110, 194, 244
HpyAV	CCTTC	4 cut(s)	310, 385, 568, 634
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	4 cut(s)	48, 229, 551, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 66, 154, 165, 174, 401
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	52, 154, 235, 687
HspAI	GCGC	2 cut(s)	67, 157
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	9 cut(s)	20, 77, 83, 148, 273, 404, 476, 660, 664
Lsp1109I	GCAGC	1 cut(s)	171
MaeII	ACGT	1 cut(s)	225
MboII	GAAGA	5 cut(s)	73, 388, 394, 577, 643
MhlI	GDGCHC	2 cut(s)	150, 231
MluCI	AATT	2 cut(s)	540, 599
MlyI	GAGTC	1 cut(s)	349
MseI	TTAA	3 cut(s)	363, 432, 700
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	1 cut(s)	652
Mva1269I	GAATGC	1 cut(s)	475
MvnI	CGCG	2 cut(s)	21, 102
MwoI	GCNNNNNNNGC	6 cut(s)	39, 66, 154, 165, 174, 401
NciI	CCSGG	1 cut(s)	652
NlaIII	CATG	4 cut(s)	52, 154, 235, 687
NspV	TTCGAA	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	73, 347
PkrI	GCNGC	4 cut(s)	20, 161, 176, 184
PleI	GAGTC	1 cut(s)	349
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	226
PspCI	CACGTG	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	249
RsaI	GTAC	2 cut(s)	206, 673
RsaNI	GTAC	2 cut(s)	205, 672
SaqAI	TTAA	3 cut(s)	363, 432, 700
SatI	GCNGC	4 cut(s)	19, 160, 175, 183
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	652
SduI	GDGCHC	2 cut(s)	150, 231
SetI	ASST	4 cut(s)	228, 303, 507, 618
SfuI	TTCGAA	1 cut(s)	596
Sse9I	AATT	2 cut(s)	540, 599
SsiI	CCGC	8 cut(s)	19, 100, 166, 175, 183, 217, 404, 473
StyD4I	CCNGG	1 cut(s)	650
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	108, 129, 239, 596
TasI	AATT	2 cut(s)	540, 599
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	3 cut(s)	21, 177, 185
TfiI	GAWTC	2 cut(s)	73, 347
Tru1I	TTAA	3 cut(s)	363, 432, 700
Tru9I	TTAA	3 cut(s)	363, 432, 700
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	1 cut(s)	159
TspDTI	ATGAA	4 cut(s)	167, 248, 316, 395
TspGWI	ACGGA	2 cut(s)	257, 275
TspRI	CASTG	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.